NonredundantMotifs:65: Difference between revisions
From FANTOM5_SSTAR
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|entrez_gene_id=10691
|motif_cluster_2013_march_motif_members= /SWISSREGULON:ATF6.p2~XBP1.p3 /HOCOMOCO:XBP1_f1~ATF6A_si /UNIPROBE:Gmeb1_secondary;SCI09
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=P0;A;C;G;T!1;3.6923076923076996;3.6923076923076996;11.6923076923077;0.923076923076922!2;0.0;4.3076923076923;6.46153846153846;9.23076923076924!3;0.0;5.23076923076924;12.0;2.76923076923076!4;1.846153846153846;8.0;9.23076923076924;0.923076923076922!5;0.0;0.615384615384616;0.0;19.38461538461538!6;0.0;0.923076923076922;19.07692307692308;0.0!7;18.46153846153846;0.923076923076922;0.0;0.615384615384616!8;0.0;20.0;0.0;0.0!9;0.0;0.0;20.0;0.0!10;0.0;0.0;0.0;20.0!11;0.0;1.846153846153846;18.15384615384616;0.0!12;1.846153846153846;0.0;18.15384615384616;0.0 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:ATF6.p2~XBP1.p3 | |entrez_gene_id=22926 | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:ATF6A_si~XBP1_f1 /SWISSREGULON:ATF6.p2~XBP1.p3 /UNIPROBE:Gmeb1_secondary;SCI09 | ||
|representative_motif_db= | |name=non-redundant65 | ||
|representative_motif_id= | |representative_motif_db=HOCOMOCO | ||
|representative_motif_name= | |representative_motif_id=ATF6A_si | ||
|score=0. | |representative_motif_name= | ||
|uniprot_entry_name= | |score=0.19333391617419116 | ||
|uniprot_entry_name=ATF6A_HUMAN | |||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant65
- db :HOCOMOCO
- Id :ATF6A_si
- name :
- score :0.19333391617419116
- External refs:
- Internal refs:
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Sub Motif Members
