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Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant59
  • db :SWISSREGULON
  • Id :NKX3-1.p2
  • name :NKX3-1
  • score :0.08646865630457126
  • External refs:
EntrezGene:NKX3-1
UniProt:NKX3-1

  • Internal refs:
EntrezGene:NKX3-1


Motif matrix
P0ACGT
1116.43589837.72543437.56341193.624007
2145.6458497.7819836.484858125.43606
3169.6302516.24339517.739591.735604
424.80627410.9190180.729676248.893782
5266.2549441.5064957.57586210.011449
6281.560350.9103971.384551.493453
720.7683440.752575248.85199814.975833
82.9976254.1115070278.239618
9247.1949332.34795935.8058580
1033.44224253.8830224.943265193.080221
11166.9992210.80689932.61277884.929852
1251.03023930.27276410.706358193.339389

Sub Motif Members