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NonredundantMotifs:46: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=PO;A;C;G;T!1;80.141547;11.386141;32.292129;5.977397!2;65.289299;36.040538;15.929712;12.537665!3;48.75651;45.570256;22.3644;13.106048!4;32.674113;91.629378;1.846416;3.647307!5;121.733158;1.440381;3.547723;3.075952!6;61.718327;54.062964;0.626706;13.389217!7;128.652909;0;1.144305;0!8;125.517274;0.861069;1.957989;1.460882!9;20.118294;97.678251;7.615138;4.385531!10;115.635649;11.224357;1.670651;1.266557!11;48.334892;60.541572;1.749115;19.171635!12;84.541195;5.304026;33.96577;5.986223!13;46.981545;39.245274;16.409825;27.16057!14;86.68541;7.667529;21.432122;14.012153
|PWM=PO;A;C;G;T!1;80.141547;11.386141;32.292129;5.977397!2;65.289299;36.040538;15.929712;12.537665!3;48.75651;45.570256;22.3644;13.106048!4;32.674113;91.629378;1.846416;3.647307!5;121.733158;1.440381;3.547723;3.075952!6;61.718327;54.062964;0.626706;13.389217!7;128.652909;0;1.144305;0!8;125.517274;0.861069;1.957989;1.460882!9;20.118294;97.678251;7.615138;4.385531!10;115.635649;11.224357;1.670651;1.266557!11;48.334892;60.541572;1.749115;19.171635!12;84.541195;5.304026;33.96577;5.986223!13;46.981545;39.245274;16.409825;27.16057!14;86.68541;7.667529;21.432122;14.012153
|entrez_gene_id=
|entrez_gene_id=BPTF
|motif_cluster_2013_march_motif_members= /SWISSREGULON:BPTF.p2 /UNIPROBE:Foxl1_secondary;SCI09~Foxa2_secondary;SCI09~Foxj1_secondary;SCI09~Foxj3_secondary;SCI09~Foxk1_secondary;SCI09 /HOCOMOCO:BPTF_si
|motif_cluster_2013_march_motif_members= /HOCOMOCO:BPTF_si /SWISSREGULON:BPTF.p2 /UNIPROBE:Foxk1_secondary;SCI09~Foxj1_secondary;SCI09~Foxl1_secondary;SCI09~Foxj3_secondary;SCI09~Foxa2_secondary;SCI09
|name=known46
|name=non-redundant46
|representative_motif_db=SWISSREGULON
|representative_motif_db=SWISSREGULON
|representative_motif_id=BPTF.p2
|representative_motif_id=BPTF.p2
|representative_motif_name=  
|representative_motif_name=BPTF
|score=1.6408128929467176
|score=1.6408128929467176
|uniprot_entry_name=
|uniprot_entry_name=BPTF
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant46
  • db :SWISSREGULON
  • Id :BPTF.p2
  • name :BPTF
  • score :1.6408128929467176
  • External refs:
EntrezGene:BPTF
UniProt:BPTF

  • Internal refs:
EntrezGene:BPTF


Motif matrix
POACGT
180.14154711.38614132.2921295.977397
265.28929936.04053815.92971212.537665
348.7565145.57025622.364413.106048
432.67411391.6293781.8464163.647307
5121.7331581.4403813.5477233.075952
661.71832754.0629640.62670613.389217
7128.65290901.1443050
8125.5172740.8610691.9579891.460882
920.11829497.6782517.6151384.385531
10115.63564911.2243571.6706511.266557
1148.33489260.5415721.74911519.171635
1284.5411955.30402633.965775.986223
1346.98154539.24527416.40982527.16057
1486.685417.66752921.43212214.012153

Sub Motif Members