NonredundantMotifs:40: Difference between revisions
From FANTOM5_SSTAR
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|entrez_gene_id=4618
|motif_cluster_2013_march_motif_members= /SWISSREGULON:SMAD1..7,9.p2~HAND1,2.p2 /JASPAR:MA0092.1;Hand1::Tcfe2a /HOCOMOCO:SMAD4_si~HAND1...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=P0;A;C;G;T!1;13.172006745362548;17.973018549747092;31.637436762226013;10.217537942664446!2;15.757166947723478;8.863406408094452;7.016863406408105;41.36256323777408!3;0.9848229342327128;6.647554806070832;63.39797639123109;1.969645868465433!4;0.0;0.0;7.139966273187192;65.86003372681289!5;0.0;72.01517706576735;0.0;0.9848229342327128!6;3.446880269814506;1.8465430016863467;0.9848229342327128;66.7217537942665!7;7.632377740303588;0.0;60.56661045531204;4.801011804384492!8;7.509274873524458;15.38785834738616;32.00674536256333;18.09612141652615!9;16.249578414839778;40.13153456998315;10.340640809443503;6.278246205733565!10;7.139966273187192;28.80607082630697;11.940978077571685;25.11298482293423 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:SMAD1..7,9.p2~HAND1,2.p2 | |entrez_gene_id=4088 | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:SMAD2_si~HAND1_si~SMAD3_f1~SMAD4_si /JASPAR:MA0092.1;Hand1::Tcfe2a /SWISSREGULON:SMAD1..7,9.p2~HAND1,2.p2 /UNIPROBE:Myf6_secondary;SCI09~Smad3_primary;SCI09 | ||
|representative_motif_db= | |name=non-redundant40 | ||
|representative_motif_id= | |representative_motif_db=HOCOMOCO | ||
|representative_motif_name= | |representative_motif_id=SMAD3_f1 | ||
|score= | |representative_motif_name= | ||
|uniprot_entry_name= | |score=0.09834004578654876 | ||
|uniprot_entry_name=SMAD3_HUMAN | |||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant40
- db :HOCOMOCO
- Id :SMAD3_f1
- name :
- score :0.09834004578654876
- External refs:
- Internal refs:
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Sub Motif Members
