NonredundantMotifs:26: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
m (Autoedit moved page NonredundantMotifs:Motif26 to NonredundantMotifs:26 without leaving a redirect: NSchange) |
||
| (4 intermediate revisions by the same user not shown) | |||
| Line 2: | Line 2: | ||
|PWM=P0;A;C;G;T!1;6.9891172830846235;3.489005634264109;9.830913701470223;38.27417799753711!2;2.0853826779509625;26.095048510778;9.304015024704292;21.09876840292279!3;57.94155840775569;0.0;0.6416562086002943;0.0!4;53.68503301850056;0.0;2.40621078225111;2.491970815604343!5;0.0;0.6416562086002943;50.78647406524281;7.155084342512888!6;1.770107580929012;0.0;0.8020702607503679;56.01103677467664!7;4.983941631208686;0.0;52.79720272439696;0.8020702607503679 | |PWM=P0;A;C;G;T!1;6.9891172830846235;3.489005634264109;9.830913701470223;38.27417799753711!2;2.0853826779509625;26.095048510778;9.304015024704292;21.09876840292279!3;57.94155840775569;0.0;0.6416562086002943;0.0!4;53.68503301850056;0.0;2.40621078225111;2.491970815604343!5;0.0;0.6416562086002943;50.78647406524281;7.155084342512888!6;1.770107580929012;0.0;0.8020702607503679;56.01103677467664!7;4.983941631208686;0.0;52.79720272439696;0.8020702607503679 | ||
|entrez_gene_id=1482 | |entrez_gene_id=1482 | ||
|motif_cluster_2013_march_motif_members= / | |motif_cluster_2013_march_motif_members= /HOCOMOCO:NKX25_f1~NKX21_f1~NKX32_f1~NKX28_f1 /HOMER:NKX2-5_HL1-Nkx2.5.biotin-ChIP-Seq /JASPAR:MA0122.1;Nkx3-2 /SWISSREGULON:NKX2-1,4.p2~NKX3-2.p2 /UNIPROBE:Nkx2-2_2823.1;CELL08~Nkx2-6_3437.1;CELL08~Nkx2-5_3436.1;CELL08~Nkx2-4_3074.1;CELL08~Titf1_1722.2;CELL08 | ||
|name= | |name=non-redundant26 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id=NKX25_f1 | |representative_motif_id=NKX25_f1 | ||
| Line 12: | Line 12: | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant26
- db :HOCOMOCO
- Id :NKX25_f1
- name :
- score :0.1500228848659613
- External refs:
- Internal refs:
| Motif matrix | ||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
