NonredundantMotifs:14: Difference between revisions
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|PWM=PO;A;C;G;T!1;1647;457;5768;8!2;8;3499;8;4365!3;3853;3885;8;134!4;7856;8;8;8!5;8;8;8;7856!6;7856;8;8;8!7;7856;8;8;8!8;7856;8;8;8!9;5335;906;575;1064!10;1915;2246;1214;2505 | |PWM=PO;A;C;G;T!1;1647;457;5768;8!2;8;3499;8;4365!3;3853;3885;8;134!4;7856;8;8;8!5;8;8;8;7856!6;7856;8;8;8!7;7856;8;8;8!8;7856;8;8;8!9;5335;906;575;1064!10;1915;2246;1214;2505 | ||
|entrez_gene_id=1045 | |entrez_gene_id=1045 | ||
|motif_cluster_2013_march_motif_members= /HOMER:CDX2_mES-Cdx2-ChIP-Seq /UNIPROBE: | |motif_cluster_2013_march_motif_members= /HOCOMOCO:CDX1_f1~HXA10_f1~CDX2_f1~HXA13_f1 /HOMER:CDX2_mES-Cdx2-ChIP-Seq /UNIPROBE:Cdx2_4272.1;CELL08~Hoxc10_2779.2;CELL08~Hoxc11_3718.2;CELL08~Hoxa11_2218.1;CELL08~Hoxa13_3126.1;CELL08~Hoxd11_3873.1;CELL08~Cdx1_2245.1;CELL08~Hoxc12_3480.1;CELL08~Hoxa10_2318.1;CELL08~Hoxd12_3481.1;CELL08~Hoxb9_3413.1;CELL08~Hoxa9_2622.2;CELL08~Hoxd13_2356.1;CELL08~Hoxb13_3479.1;CELL08~Hoxd10_2368.2;CELL08~Hoxc13_3127.1;CELL08 | ||
|name= | |name=non-redundant14 | ||
|representative_motif_db=HOMER | |representative_motif_db=HOMER | ||
|representative_motif_id=CDX2_mES-Cdx2-ChIP-Seq | |representative_motif_id=CDX2_mES-Cdx2-ChIP-Seq | ||
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[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant14
- db :HOMER
- Id :CDX2_mES-Cdx2-ChIP-Seq
- name :
- score :0.10145109844271104
- External refs:
- Internal refs:
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Sub Motif Members
