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Revision as of 09:49, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant39
  • db :SWISSREGULON
  • Id :RFX1..5_RFXANK_RFXAP.p2
  • name :RFX1
  • score :0.4075571500297151
  • External refs:
EntrezGene:RFX1
UniProt:RFX1

  • Internal refs:
EntrezGene:RFX1


Motif matrix
P0ACGT
116.702876113.98082969.44038364.796271
257.22157370.34376699.03572538.319295
333.5598020.964677230.395880
45.90999718.53407920.688174219.788109
540.233566138.2992293.99189982.395665
678.7813327.898323159.63592718.604777
70246.151065018.769294
82.941368219.6553775.81293236.510682
9203.16892426.50628814.74129820.503849
1015.56644330.3682413.922422215.063253
1149.1341370215.7862220
121.9299970262.9903620
1338.177179184.50271711.64271130.597752
14255.077421.9299976.9189040.994038
15261.01049403.9098650
160263.92510700.995252
1778.2968790.16315778.70998817.750344
1887.49876830.410158131.29953615.711897

Sub Motif Members