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Revision as of 17:23, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant146
  • db :UNIPROBE
  • Id :Gabpa_secondary
  • name :SCI09
  • score :2.566099954572482
  • External refs:
EntrezGene:2551
UniProt:2551

  • Internal refs:
EntrezGene:2551


Motif matrix
P0ACGT
10.2331333391561890.5518276165220440.1390091837144330.076029860607334
20.1000847469508630.5255620984501110.101687964652670.272665189946356
30.2529960316514270.1981212411925330.2991713737719410.249711353384099
40.1414712099058340.195289551371460.2345600854699020.428679153252804
50.160992775667350.442764903012370.08265273614916130.313589585171118
60.3078897553043650.1279498131072350.07171273983942380.492447691748975
70.09345289284928410.1489350605048590.08028784756453670.677324199081321
80.08353512246747590.6342118123969740.07465239761158380.207600667523966
90.0981191667474950.6393277060202710.09995743461548520.162595692616749
100.06743033617337640.4517757032575920.3571876621906420.12360629837839
110.286258996953870.4669749292911260.06301340414952880.183752669605476
120.2032112289372490.422637065339520.1333682397962880.240783465926943
130.1112056170312940.3155953114448440.1928333302598860.380365741263976
140.199461875181160.3246516286926590.3054912437792810.170395252346901
150.3479191967994170.2923866630012520.230724107864870.128970032334461
160.2546479385799760.294195723753950.1949423528871740.256213984778901

Sub Motif Members