Personal tools

NonredundantMotifs:47: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
m (Autoedit moved page MotifCluster2013March:Known47 to MotifCluster2013March:Non redundant47 without leaving a redirect: NSchange)
(No difference)

Revision as of 17:23, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant47
  • db :HOMER
  • Id :NANOG_mES-Nanog-ChIP-Seq
  • name  :
  • score :0.03222940009290264
  • External refs:
EntrezGene:79923
UniProt:79923

  • Internal refs:
EntrezGene:79923


Motif matrix
POACGT
127191633316583
257619193879407
317651681081329
420484191237305
5622412975353
672076747
772468204286
84991787244759
939337801627441
10123432351539773

Sub Motif Members