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NonredundantMotifs:106: Difference between revisions

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|PWM=P0;A;C;G;T!1;0.2704401466472;0.280854563996597;0.182253932648463;0.26645135670774!2;0.232293824553287;0.286576741921589;0.287021989443211;0.194107444081914!3;0.182718648811551;0.289523645691666;0.187726474522759;0.340031230974024!4;0.32166754059233;0.055383382227865;0.129604184540657;0.493344892639148!5;0.10597094035225;0.476988758749163;0.00758013285624535;0.409460168042342!6;0.150172027245697;0.0137013551586514;0.803513011961375;0.0326136056342759!7;0.00455868116379531;0.194378164390001;0.794740729905578;0.00632242454062528!8;0.0478433508373583;0.942269228692923;0.00591760599925775;0.00396981447046127!9;0.0100887630152823;0.00258398875110373;0.946109395733224;0.0412178525003898!10;0.0122764128374067;0.865373489580184;0.117935353488399;0.00441474409401017!11;0.0459118414331594;0.779219643705453;0.00693541655777782;0.16793309830361!12;0.781965072328259;0.0116227134053222;0.113119353501702;0.0932928607647172!13;0.612968274487541;0.172164479748871;0.0960610539237365;0.118806191839851!14;0.357204303460633;0.206996637451201;0.222456402337992;0.213342656750174!15;0.292059187528468;0.261101052111441;0.279673741850398;0.167166018509692!16;0.164667144585506;0.173227022291254;0.371882348834686;0.290223484288554!17;0.157764910641177;0.278892432486016;0.333118716726286;0.230223940146521
|PWM=P0;A;C;G;T!1;0.2704401466472;0.280854563996597;0.182253932648463;0.26645135670774!2;0.232293824553287;0.286576741921589;0.287021989443211;0.194107444081914!3;0.182718648811551;0.289523645691666;0.187726474522759;0.340031230974024!4;0.32166754059233;0.055383382227865;0.129604184540657;0.493344892639148!5;0.10597094035225;0.476988758749163;0.00758013285624535;0.409460168042342!6;0.150172027245697;0.0137013551586514;0.803513011961375;0.0326136056342759!7;0.00455868116379531;0.194378164390001;0.794740729905578;0.00632242454062528!8;0.0478433508373583;0.942269228692923;0.00591760599925775;0.00396981447046127!9;0.0100887630152823;0.00258398875110373;0.946109395733224;0.0412178525003898!10;0.0122764128374067;0.865373489580184;0.117935353488399;0.00441474409401017!11;0.0459118414331594;0.779219643705453;0.00693541655777782;0.16793309830361!12;0.781965072328259;0.0116227134053222;0.113119353501702;0.0932928607647172!13;0.612968274487541;0.172164479748871;0.0960610539237365;0.118806191839851!14;0.357204303460633;0.206996637451201;0.222456402337992;0.213342656750174!15;0.292059187528468;0.261101052111441;0.279673741850398;0.167166018509692!16;0.164667144585506;0.173227022291254;0.371882348834686;0.290223484288554!17;0.157764910641177;0.278892432486016;0.333118716726286;0.230223940146521
|entrez_gene_id=1870
|entrez_gene_id=1870
|motif_cluster_2013_march_motif_members= /UNIPROBE:E2F2_secondary;SCI09~E2F3_secondary;SCI09
|motif_cluster_2013_march_motif_members= /UNIPROBE:E2F3_secondary;SCI09~E2F2_secondary;SCI09
|name=known106
|name=non-redundant106
|representative_motif_db=UNIPROBE
|representative_motif_db=UNIPROBE
|representative_motif_id=E2F2_secondary
|representative_motif_id=E2F2_secondary
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant106
  • db :UNIPROBE
  • Id :E2F2_secondary
  • name :SCI09
  • score :1.8769964180688634
  • External refs:
EntrezGene:1870
UniProt:1870

  • Internal refs:
EntrezGene:1870


Motif matrix
P0ACGT
10.27044014664720.2808545639965970.1822539326484630.26645135670774
20.2322938245532870.2865767419215890.2870219894432110.194107444081914
30.1827186488115510.2895236456916660.1877264745227590.340031230974024
40.321667540592330.0553833822278650.1296041845406570.493344892639148
50.105970940352250.4769887587491630.007580132856245350.409460168042342
60.1501720272456970.01370135515865140.8035130119613750.0326136056342759
70.004558681163795310.1943781643900010.7947407299055780.00632242454062528
80.04784335083735830.9422692286929230.005917605999257750.00396981447046127
90.01008876301528230.002583988751103730.9461093957332240.0412178525003898
100.01227641283740670.8653734895801840.1179353534883990.00441474409401017
110.04591184143315940.7792196437054530.006935416557777820.16793309830361
120.7819650723282590.01162271340532220.1131193535017020.0932928607647172
130.6129682744875410.1721644797488710.09606105392373650.118806191839851
140.3572043034606330.2069966374512010.2224564023379920.213342656750174
150.2920591875284680.2611010521114410.2796737418503980.167166018509692
160.1646671445855060.1732270222912540.3718823488346860.290223484288554
170.1577649106411770.2788924324860160.3331187167262860.230223940146521

Sub Motif Members

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