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NonredundantMotifs:61: Difference between revisions

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|PWM=P0;A;C;G;T!1;280.5564199254187;890.0926431787442;420.4217047051987;1270.2371713144134!2;464.4796836864638;464.4744046828397;1268.3183710759745;664.0354796784958!3;687.9014166643329;231.04984596173216;1529.2975805851677;413.05909591254647!4;170.70519816256572;2433.9464715689414;115.160130914649;141.49613847763507!5;23.531152707659633;2748.7918521774864;34.58431372127447;54.40062051736051!6;1923.8530734004937;92.74285403930718;537.7400196660248;306.97199201797827!7;115.80735198467234;1677.904406658909;1024.690902071826;42.90527840837429!8;354.7811469550338;1303.7856977334266;385.16201639799124;817.5790780373256!9;2387.2992063806114;177.09130221149164;143.15107178185102;153.76635874984012!10;8.122720219673088;11.072312566288444;2802.158899057837;39.95400727997823!11;967.0798860762594;16.459715524955975;1866.2867422695047;11.481595253063388!12;157.8770562578218;107.68653129505327;1625.5519679962422;970.1923835746661!13;38.69136303693416;0.5947961935945176;2787.977274245084;34.04450564816709!14;118.17120639074078;62.786839933313395;2511.82509312037;168.52479967936407!15;296.475244511232;2357.2406179976124;41.03911903974291;166.5529575752058!16;1290.0134755976605;41.51712114415936;1475.332731577269;54.44461080469106!17;178.43560540701907;1445.8638995563858;1130.0211021453563;106.98733201501787!18;399.2442541928694;1002.3805140210958;311.63779248593625;1148.0453784238705!19;1132.0681318726963;693.1417630926046;889.0964378375724;147.00160632089722
|PWM=P0;A;C;G;T!1;280.5564199254187;890.0926431787442;420.4217047051987;1270.2371713144134!2;464.4796836864638;464.4744046828397;1268.3183710759745;664.0354796784958!3;687.9014166643329;231.04984596173216;1529.2975805851677;413.05909591254647!4;170.70519816256572;2433.9464715689414;115.160130914649;141.49613847763507!5;23.531152707659633;2748.7918521774864;34.58431372127447;54.40062051736051!6;1923.8530734004937;92.74285403930718;537.7400196660248;306.97199201797827!7;115.80735198467234;1677.904406658909;1024.690902071826;42.90527840837429!8;354.7811469550338;1303.7856977334266;385.16201639799124;817.5790780373256!9;2387.2992063806114;177.09130221149164;143.15107178185102;153.76635874984012!10;8.122720219673088;11.072312566288444;2802.158899057837;39.95400727997823!11;967.0798860762594;16.459715524955975;1866.2867422695047;11.481595253063388!12;157.8770562578218;107.68653129505327;1625.5519679962422;970.1923835746661!13;38.69136303693416;0.5947961935945176;2787.977274245084;34.04450564816709!14;118.17120639074078;62.786839933313395;2511.82509312037;168.52479967936407!15;296.475244511232;2357.2406179976124;41.03911903974291;166.5529575752058!16;1290.0134755976605;41.51712114415936;1475.332731577269;54.44461080469106!17;178.43560540701907;1445.8638995563858;1130.0211021453563;106.98733201501787!18;399.2442541928694;1002.3805140210958;311.63779248593625;1148.0453784238705!19;1132.0681318726963;693.1417630926046;889.0964378375724;147.00160632089722
|entrez_gene_id=10664
|entrez_gene_id=10664
|motif_cluster_2013_march_motif_members= /JASPAR:MA0139.1;CTCF /SWISSREGULON:CTCF.p2 /HOMER:CTCFL_K562-CTCFL-ChIP-Seq~CTCF_CD4+-CTCF-ChIP-Seq /HOCOMOCO:CTCF_f2
|motif_cluster_2013_march_motif_members= /HOCOMOCO:CTCF_f2 /HOMER:CTCF_CD4+-CTCF-ChIP-Seq~CTCFL_K562-CTCFL-ChIP-Seq /JASPAR:MA0139.1;CTCF /SWISSREGULON:CTCF.p2
|name=known61
|name=non-redundant61
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=CTCF_f2
|representative_motif_id=CTCF_f2
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant61
  • db :HOCOMOCO
  • Id :CTCF_f2
  • name  :
  • score :2.27747693767069
  • External refs:
EntrezGene:10664
UniProt:10664

  • Internal refs:
EntrezGene:10664


Motif matrix
P0ACGT
1280.5564199254187890.0926431787442420.42170470519871270.2371713144134
2464.4796836864638464.47440468283971268.3183710759745664.0354796784958
3687.9014166643329231.049845961732161529.2975805851677413.05909591254647
4170.705198162565722433.9464715689414115.160130914649141.49613847763507
523.5311527076596332748.791852177486434.5843137212744754.40062051736051
61923.853073400493792.74285403930718537.7400196660248306.97199201797827
7115.807351984672341677.9044066589091024.69090207182642.90527840837429
8354.78114695503381303.7856977334266385.16201639799124817.5790780373256
92387.2992063806114177.09130221149164143.15107178185102153.76635874984012
108.12272021967308811.0723125662884442802.15889905783739.95400727997823
11967.079886076259416.4597155249559751866.286742269504711.481595253063388
12157.8770562578218107.686531295053271625.5519679962422970.1923835746661
1338.691363036934160.59479619359451762787.97727424508434.04450564816709
14118.1712063907407862.7868399333133952511.82509312037168.52479967936407
15296.4752445112322357.240617997612441.03911903974291166.5529575752058
161290.013475597660541.517121144159361475.33273157726954.44461080469106
17178.435605407019071445.86389955638581130.0211021453563106.98733201501787
18399.24425419286941002.3805140210958311.637792485936251148.0453784238705
191132.0681318726963693.1417630926046889.0964378375724147.00160632089722

Sub Motif Members

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