NonredundantMotifs:9: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 2: | Line 2: | ||
|PWM=P0;A;C;G;T!1;3.316599268208527;0.6334510812635019;1.5718971275798;1.478052522948169!2;3.472250371370305;0.844601441684672;0.0;2.683148186945023!3;0.0;0.844601441684672;0.0;6.155398558315335!4;0.844601441684672;0.0;6.155398558315335;0.0!5;7.0;0.0;0.0;0.0!6;0.0;0.0;0.0;7.0!7;0.0;0.0;0.0;7.0!8;0.844601441684672;0.0;3.527749628629695;2.62764892968564!9;6.155398558315335;0.0;0.844601441684672;0.0!10;0.0;0.0;0.0;7.0!11;0.0;0.0;6.155398558315335;0.844601441684672!12;3.472250371370305;3.527749628629695;0.0;0.0!13;3.527749628629695;1.783047488000968;0.844601441684672;0.844601441684672 | |PWM=P0;A;C;G;T!1;3.316599268208527;0.6334510812635019;1.5718971275798;1.478052522948169!2;3.472250371370305;0.844601441684672;0.0;2.683148186945023!3;0.0;0.844601441684672;0.0;6.155398558315335!4;0.844601441684672;0.0;6.155398558315335;0.0!5;7.0;0.0;0.0;0.0!6;0.0;0.0;0.0;7.0!7;0.0;0.0;0.0;7.0!8;0.844601441684672;0.0;3.527749628629695;2.62764892968564!9;6.155398558315335;0.0;0.844601441684672;0.0!10;0.0;0.0;0.0;7.0!11;0.0;0.0;6.155398558315335;0.844601441684672!12;3.472250371370305;3.527749628629695;0.0;0.0!13;3.527749628629695;1.783047488000968;0.844601441684672;0.844601441684672 | ||
|entrez_gene_id=3216 | |entrez_gene_id=3216 | ||
|motif_cluster_2013_march_motif_members= / | |motif_cluster_2013_march_motif_members= /HOCOMOCO:PBX2_f1~PKNX1_si~HNF6_f1~CUX1_f1~HXB7_si~HXB8_do~HXB6_f1~HXB1_f1~HXA1_f1~PBX1_do~ONEC2_si /HOMER:HOXB4_ES-Hoxb4-ChIP-Seq(GSE34014)~PDX1_Islet-Pdx1-ChIP-Seq~ONECUT1_Liver-Hnf6-ChIP-Seq(ERP000394)~HOXA9_HSC-Hoxa9-ChIP-Seq(GSE33509)~HOXC9_Ainv15-Hoxc9-ChIP-Seq~HOXA2_mES-Hoxa2-ChIP-Seq /JASPAR:MA0070.1;PBX1 /SWISSREGULON:PBX1.p2~CUX2.p2~ONECUT1,2.p2 /UNIPROBE:Lef1_secondary;SCI09~Tcf7l2_secondary;SCI09~Pbx1_3203.1;CELL08 | ||
|name= | |name=non-redundant9 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id=HXB6_f1 | |representative_motif_id=HXB6_f1 | ||
|representative_motif_name= | |representative_motif_name= | ||
|score=0. | |score=0.1272361452579038 | ||
|uniprot_entry_name=HXB6_HUMAN | |uniprot_entry_name=HXB6_HUMAN | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Revision as of 16:46, 29 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant9
- db :HOCOMOCO
- Id :HXB6_f1
- name :
- score :0.1272361452579038
- External refs:
- Internal refs:
| Motif matrix | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
