NonredundantMotifs:180: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;0.470459;30.618276;1.549277;94.212023!2;46.664693;73.505154;1.833437;4.846751!3;0;5.575778;6.963839;114.310418!4;45.885934;2.674796;48.843714;29.445591!5;69.444167;15.412824;5.961488;36.031556!6;90.606405;0.528435;35.715195;0!7;116.679781;0.471931;9.698323;0!8;8.303826;1.656703;114.958237;1.931269!9;10.281217;8.952193;106.069707;1.546918!10;59.975441;4.657693;62.216901;0!11;27.210159;28.851283;69.822047;0.966546!12;2.249864;78.205061;41.855984;4.539126 | |PWM=PO;A;C;G;T!1;0.470459;30.618276;1.549277;94.212023!2;46.664693;73.505154;1.833437;4.846751!3;0;5.575778;6.963839;114.310418!4;45.885934;2.674796;48.843714;29.445591!5;69.444167;15.412824;5.961488;36.031556!6;90.606405;0.528435;35.715195;0!7;116.679781;0.471931;9.698323;0!8;8.303826;1.656703;114.958237;1.931269!9;10.281217;8.952193;106.069707;1.546918!10;59.975441;4.657693;62.216901;0!11;27.210159;28.851283;69.822047;0.966546!12;2.249864;78.205061;41.855984;4.539126 | ||
|entrez_gene_id= | |entrez_gene_id=GTF2A1,2 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:GTF2A1,2.p2 | |motif_cluster_2013_march_motif_members= /SWISSREGULON:GTF2A1,2.p2 | ||
|name=known180 | |name=known180 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=GTF2A1,2.p2 | |representative_motif_id=GTF2A1,2.p2 | ||
|representative_motif_name= | |representative_motif_name=GTF2A1,2 | ||
|score=0.0700258131500835 | |score=0.0700258131500835 | ||
|uniprot_entry_name= | |uniprot_entry_name=GTF2A1,2 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known180
- db :SWISSREGULON
- Id :GTF2A1,2.p2
- name :GTF2A1,2
- score :0.0700258131500835
- External refs:
- Internal refs:
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Sub Motif Members
