NonredundantMotifs:108: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;188.225515;12.151657;118.547859;2.806698!2;3.781429;29.145229;283.080283;5.724788!3;37.286308;0.52327;283.268787;0.653364!4;6.34535;0;309.026723;6.359656!5;29.71908;33.224882;47.097617;211.69015!6;202.346517;17.190812;16.999505;85.194895!7;169.31449;6.106235;105.611139;40.699865!8;18.642629;234.401995;62.366026;6.321079!9;242.290806;0.482023;74.221575;4.737325!10;8.944399;8.476722;297.315297;6.995311!11;40.341355;232.415704;40.825035;8.149635 | |PWM=PO;A;C;G;T!1;188.225515;12.151657;118.547859;2.806698!2;3.781429;29.145229;283.080283;5.724788!3;37.286308;0.52327;283.268787;0.653364!4;6.34535;0;309.026723;6.359656!5;29.71908;33.224882;47.097617;211.69015!6;202.346517;17.190812;16.999505;85.194895!7;169.31449;6.106235;105.611139;40.699865!8;18.642629;234.401995;62.366026;6.321079!9;242.290806;0.482023;74.221575;4.737325!10;8.944399;8.476722;297.315297;6.995311!11;40.341355;232.415704;40.825035;8.149635 | ||
|entrez_gene_id= | |entrez_gene_id=SPZ1 | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /JASPAR:MA0111.1;Spz1 /SWISSREGULON:SPZ1.p2 | ||
|name=known108 | |name=known108 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=SPZ1.p2 | |representative_motif_id=SPZ1.p2 | ||
|representative_motif_name= | |representative_motif_name=SPZ1 | ||
|score=1.2928700741270822 | |score=1.2928700741270822 | ||
|uniprot_entry_name= | |uniprot_entry_name=SPZ1 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known108
- db :SWISSREGULON
- Id :SPZ1.p2
- name :SPZ1
- score :1.2928700741270822
- External refs:
- Internal refs:
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Sub Motif Members
