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NonredundantMotifs:57: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=PO;A;C;G;T!1;50.205524;0.917721;0.887409;135.08469!2;0.98581;50.662145;11.092311;124.355078!3;179.718929;0.930629;5.513616;0.93217!4;187.095344;0;0;0!5;19.167047;0.900329;167.027968;0!6;7.569904;1.91438;1.79216;175.8189!7;76.898677;3.644429;106.552238;0!8;5.456574;69.521663;64.33702;47.780087!9;5.611117;8.318454;3.72791;169.437863!10;0.881217;1.785396;0;184.428731
|PWM=PO;A;C;G;T!1;50.205524;0.917721;0.887409;135.08469!2;0.98581;50.662145;11.092311;124.355078!3;179.718929;0.930629;5.513616;0.93217!4;187.095344;0;0;0!5;19.167047;0.900329;167.027968;0!6;7.569904;1.91438;1.79216;175.8189!7;76.898677;3.644429;106.552238;0!8;5.456574;69.521663;64.33702;47.780087!9;5.611117;8.318454;3.72791;169.437863!10;0.881217;1.785396;0;184.428731
|entrez_gene_id=
|entrez_gene_id=NKX2-2,8
|motif_cluster_2013_march_motif_members= /SWISSREGULON:NKX2-2,8.p2 /UNIPROBE:Nkx2-9_3082.1;CELL08~Nkx2-3_3435.1;CELL08~Nkx3-1_secondary;SCI09~Nkx3-1_2923.2;CELL08 /HOCOMOCO:NKX22_si
|motif_cluster_2013_march_motif_members= /SWISSREGULON:NKX2-2,8.p2 /UNIPROBE:Nkx2-9_3082.1;CELL08~Nkx2-3_3435.1;CELL08~Nkx3-1_secondary;SCI09~Nkx3-1_2923.2;CELL08 /HOCOMOCO:NKX22_si
|name=known57
|name=known57
|representative_motif_db=SWISSREGULON
|representative_motif_db=SWISSREGULON
|representative_motif_id=NKX2-2,8.p2
|representative_motif_id=NKX2-2,8.p2
|representative_motif_name=  
|representative_motif_name=NKX2-2,8
|score=0.107232453455117
|score=0.107232453455117
|uniprot_entry_name=
|uniprot_entry_name=NKX2-2,8
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]

Revision as of 12:09, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known57
  • db :SWISSREGULON
  • Id :NKX2-2,8.p2
  • name :NKX2-2,8
  • score :0.107232453455117
  • External refs:
EntrezGene:NKX2-2
UniProt:NKX2-2

EntrezGene:8
UniProt:8

  • Internal refs:
EntrezGene:NKX2-2

EntrezGene:8


Motif matrix
POACGT
150.2055240.9177210.887409135.08469
20.9858150.66214511.092311124.355078
3179.7189290.9306295.5136160.93217
4187.095344000
519.1670470.900329167.0279680
67.5699041.914381.79216175.8189
776.8986773.644429106.5522380
85.45657469.52166364.3370247.780087
95.6111178.3184543.72791169.437863
100.8812171.7853960184.428731

Sub Motif Members