NonredundantMotifs:18: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;100.935919;11.339498;15.571054;42.704675!2;28.796877;27.043595;108.487002;6.223672!3;63.310961;54.774655;49.972215;2.493315!4;61.202942;32.822763;69.017879;7.507562!5;24.335405;66.966706;30.584107;48.664928!6;1.72718;158.486297;4.282668;6.055001!7;161.95321;1.728932;0.981535;5.887469!8;8.358101;2.705957;157.043749;2.443339!9;0;162.833569;3.313998;4.403579!10;12.411169;8.249244;14.124317;135.766416!11;4.734487;29.51466;133.941244;2.360755!12;5.835922;70.070533;38.083636;56.561055!13;44.02001;3.053394;105.400631;18.077111!14;4.804799;5.824147;153.431742;6.490458!15;20.546444;72.962628;41.178524;35.86355!16;13.446756;145.241133;5.226867;6.63639!17;77.086218;27.83045;37.080635;28.553843!18;8.434218;12.910522;119.616812;29.589594 | |PWM=PO;A;C;G;T!1;100.935919;11.339498;15.571054;42.704675!2;28.796877;27.043595;108.487002;6.223672!3;63.310961;54.774655;49.972215;2.493315!4;61.202942;32.822763;69.017879;7.507562!5;24.335405;66.966706;30.584107;48.664928!6;1.72718;158.486297;4.282668;6.055001!7;161.95321;1.728932;0.981535;5.887469!8;8.358101;2.705957;157.043749;2.443339!9;0;162.833569;3.313998;4.403579!10;12.411169;8.249244;14.124317;135.766416!11;4.734487;29.51466;133.941244;2.360755!12;5.835922;70.070533;38.083636;56.561055!13;44.02001;3.053394;105.400631;18.077111!14;4.804799;5.824147;153.431742;6.490458!15;20.546444;72.962628;41.178524;35.86355!16;13.446756;145.241133;5.226867;6.63639!17;77.086218;27.83045;37.080635;28.553843!18;8.434218;12.910522;119.616812;29.589594 | ||
|entrez_gene_id= | |entrez_gene_id=TFAP4 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:NHLH1,2.p2~TCF4_dimer.p2~MYFfamily.p2~TFAP4.p2 | |motif_cluster_2013_march_motif_members= /JASPAR:MA0048.1;NHLH1~MA0055.1;Myf /SWISSREGULON:NHLH1,2.p2~TCF4_dimer.p2~MYFfamily.p2~TFAP4.p2 /HOMER:MYOD1_Myotube-MyoD-ChIP-Seq~TCF12_GM12878-Tcf12-ChIP-Seq~TCF3_proBcell-E2A-ChIP-Seq /UNIPROBE:Ascl2_primary;SCI09 /HOCOMOCO:TFAP4_si~MYOG_f1~MYOD1_f1~HTF4_f1~HEN1_si~MYF6_f1 | ||
|name=known18 | |name=known18 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=TFAP4.p2 | |representative_motif_id=TFAP4.p2 | ||
|representative_motif_name= | |representative_motif_name=TFAP4 | ||
|score=1.850544091503666 | |score=1.850544091503666 | ||
|uniprot_entry_name= | |uniprot_entry_name=TFAP4 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known18
- db :SWISSREGULON
- Id :TFAP4.p2
- name :TFAP4
- score :1.850544091503666
- External refs:
- Internal refs:
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Sub Motif Members
