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NonredundantMotifs:199: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;0.365754619760466;0.22578180422754;0.0918707684837937;0.316592807528201!2;0.343299407173213;0.160876466891729;0.206970590293001;0.288853535642058!3;0.060678740322344;0.0720384060088542;0.0923078851174174;0.774974968551384!4;0.713491287041738;0.0633502876213121;0.137042362060149;0.0861160632768002!5;0.174542155020481;0.0880945132460679;0.0947438156190423;0.642619516114408!6;0.0970262867149638;0.0850268208808856;0.139474528872432;0.678472363531718!7;0.710084071636598;0.072722936094092;0.128873361339213;0.0883196309300972!8;0.369668653279851;0.182092059398416;0.12749989228392;0.320739395037813!9;0.181161548700691;0.145491237836238;0.0936885553257558;0.579658658137315!10;0.7103075955177;0.0674072228705173;0.0546475897042765;0.167637591907506!11;0.679811938701058;0.0582283690128381;0.0897733780767608;0.172186314209343!12;0.705700419598604;0.167070178818269;0.0338928988941205;0.0933365026890068!13;0.217869106188728;0.162330963963293;0.460989295943543;0.158810633904437!14;0.412095106912456;0.213864676100769;0.22017435641817;0.153865860568606
|entrez_gene_id=84662
|entrez_gene_id=84662
|motif_cluster_2013_march_motif_members= /UNIPROBE:Glis2_secondary;SCI09
|motif_cluster_2013_march_motif_members= /UNIPROBE:Glis2_secondary;SCI09

Revision as of 10:49, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known199
  • db :UNIPROBE
  • Id :Glis2_secondary
  • name :SCI09
  • score :0.020725320147180586
  • External refs:
EntrezGene:84662
UniProt:84662

  • Internal refs:
EntrezGene:84662


Motif matrix
P0ACGT
10.3657546197604660.225781804227540.09187076848379370.316592807528201
20.3432994071732130.1608764668917290.2069705902930010.288853535642058
30.0606787403223440.07203840600885420.09230788511741740.774974968551384
40.7134912870417380.06335028762131210.1370423620601490.0861160632768002
50.1745421550204810.08809451324606790.09474381561904230.642619516114408
60.09702628671496380.08502682088088560.1394745288724320.678472363531718
70.7100840716365980.0727229360940920.1288733613392130.0883196309300972
80.3696686532798510.1820920593984160.127499892283920.320739395037813
90.1811615487006910.1454912378362380.09368855532575580.579658658137315
100.71030759551770.06740722287051730.05464758970427650.167637591907506
110.6798119387010580.05822836901283810.08977337807676080.172186314209343
120.7057004195986040.1670701788182690.03389289889412050.0933365026890068
130.2178691061887280.1623309639632930.4609892959435430.158810633904437
140.4120951069124560.2138646761007690.220174356418170.153865860568606

Sub Motif Members