NonredundantMotifs:183: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=5626
|motif_cluster_2013_march_motif_members= /HOCOMOCO:PROP1_f1
|name=known183
|representative_motif_db=HOCOMOCO
|representative_motif_id=...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;2.275280898876405;1.264044943820223;4.196629213483149;1.264044943820223!2;6.977528089887644;0.0;0.0;2.022471910112364!3;0.0;3.0337078651685374;5.9662921348314635;0.0!4;3.0337078651685374;1.921348314606744;1.011235955056182;3.0337078651685374!5;6.977528089887644;1.011235955056182;0.0;1.011235955056182!6;6.977528089887644;0.0;1.011235955056182;1.011235955056182!7;2.022471910112364;0.0;1.011235955056182;5.9662921348314635!8;0.0;1.011235955056182;0.0;7.988764044943817!9;5.9662921348314635;1.011235955056182;1.011235955056182;1.011235955056182!10;7.988764044943817;1.011235955056182;0.0;0.0!11;2.022471910112364;2.022471910112364;1.011235955056182;3.943820224719099!12;6.067415730337084;0.0;0.0;2.932584269662926!13;1.921348314606744;0.0;0.0;7.078651685393256!14;3.943820224719099;2.022471910112364;3.0337078651685374;0.0!15;3.539325842696628;0.5056179775280901;3.438202247191008;1.5168539325842731 | |||
|entrez_gene_id=5626 | |entrez_gene_id=5626 | ||
|motif_cluster_2013_march_motif_members= /HOCOMOCO:PROP1_f1 | |motif_cluster_2013_march_motif_members= /HOCOMOCO:PROP1_f1 | ||
Revision as of 10:48, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known183
- db :HOCOMOCO
- Id :PROP1_f1
- name :
- score :0.029623839784875226
- External refs:
- Internal refs:
| Motif matrix | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
