NonredundantMotifs:54: Difference between revisions
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|motif_cluster_2013_march_motif_members= /SWISSREGULON:POU5F1_SOX2{dimer}.p2 /JASPAR:MA0142.1;Pou5f1~MA0143.1;Sox2 /HOCOMOCO:SOX2_f1~PO5F1_...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |entrez_gene_id= | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /JASPAR:MA0142.1;Pou5f1~MA0143.1;Sox2 /HOCOMOCO:SOX2_f1~PO5F1_do~PO3F1_f1 /SWISSREGULON:POU5F1_SOX2(dimer).p2 | ||
|name=known54 | |name=known54 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=POU5F1_SOX2 | |representative_motif_id=POU5F1_SOX2(dimer).p2 | ||
|representative_motif_name= | |representative_motif_name= | ||
|score=0.08598973982506294 | |score=0.08598973982506294 | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known54
- db :SWISSREGULON
- Id :POU5F1_SOX2(dimer).p2
- name :
- score :0.08598973982506294
- External refs:
- Internal refs:
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Sub Motif Members
