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MCL coexpression mm9:142: Difference between revisions

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|ontology_enrichment_uberon=UBERON:0001134!3.30e-15!9;UBERON:0002036!3.30e-15!9;UBERON:0002385!3.30e-15!9;UBERON:0000486!3.30e-15!9;UBERON:0007503!3.30e-15!9;UBERON:0001015!3.30e-15!9;UBERON:0002329!3.30e-15!9;UBERON:0003082!3.30e-15!9;UBERON:0003059!3.30e-15!9;UBERON:0007282!3.30e-15!9;UBERON:0004290!3.30e-15!9;UBERON:0009618!3.30e-15!9;UBERON:0000383!9.08e-14!10;UBERON:0007524!1.37e-12!11;UBERON:0003077!1.37e-12!11;UBERON:0007285!1.37e-12!11
|ontology_enrichment_uberon=UBERON:0001134!3.30e-15!9;UBERON:0002036!3.30e-15!9;UBERON:0002385!3.30e-15!9;UBERON:0000486!3.30e-15!9;UBERON:0007503!3.30e-15!9;UBERON:0001015!3.30e-15!9;UBERON:0002329!3.30e-15!9;UBERON:0003082!3.30e-15!9;UBERON:0003059!3.30e-15!9;UBERON:0007282!3.30e-15!9;UBERON:0004290!3.30e-15!9;UBERON:0009618!3.30e-15!9;UBERON:0000383!9.08e-14!10;UBERON:0007524!1.37e-12!11;UBERON:0003077!1.37e-12!11;UBERON:0007285!1.37e-12!11
|tfbs_overrepresentation_for_novel_motifs=0.050578,0.00335539,0.181617,0.314687,0.959626,1.10364,0.350584,0.489008,0.200331,0.000109535,0.0469398,0.0616208,0.0636427,0.0744768,0.848369,0,0.0634629,1.99971,0.20331,0.28297,0.224977,0.434947,0.0160505,0.545691,0.194508,0.0908078,0.620571,0.106289,0.0399944,0.170748,0.20346,0.103961,0.0393064,0.076247,0.00865176,0.000526049,0.00403783,0.0598323,0.671975,0.00409127,0.929921,0.211389,1.21988,0.206545,0.0189112,0.0223957,0.153523,0.0427938,1.31294,0.091485,0.209809,0.108562,0.636557,0.52571,0.55065,0.201078,0.648864,0.150069,0.0305839,0.077366,0.315591,0.115211,0.238269,0.198985,0.0190406,0.239144,0.276192,0.550916,0.310154,0.428427,0.0292598,0.682683,2.1209e-06,0.20828,0.00177862,0.0188638,0.122122,0.144191,0.615877,0.373591,1.07631,0.0696536,0.275405,0.331006,0.141808,2.43442e-06,1.08992,0.0233936,0.157637,0.69383,0.326193,0.443875,0.719451,0.418159,0.0453858,0.278303,0.789311,0.111143,0.35379,0.395716,1.28838,0.103835,0.167502,0.210388,0.459235,0.0061776,0.571839,0.427157,0.0259501,0.0234142,0.0467236,0.503681,0.377122,0.0491535,0.331406,0.52444,0.000508875,0.75956,0.228438,1.25241,0.607665,0.403376,0.229575,1.3564,0.372346,0.300027,0.187353,0.346623,0.275137,0.184505,0.477695,0.713573,0.254877,0.684776,0.347557,0.191879,0.244366,0.213577,0.31117,1.03749,0.66523,2.9846,1.50121,0.35203,0.780235,0.593595,0.64292,0.999616,0.249003,0.0477387,0.07714,6.43114e-08,0.178444,0.201094,0.0860773,0.648076,0.495435,0.515206,0.802428,0.0552641,0.318102,1.38511,0.300536,0.0455302,0.199955,0.97773,0.453806,0.546656,0.0306659
|tfbs_overrepresentation_for_novel_motifs=0.050578,0.00335539,0.181617,0.314687,0.959626,1.10364,0.350584,0.489008,0.200331,0.000109535,0.0469398,0.0616208,0.0636427,0.0744768,0.848369,0,0.0634629,1.99971,0.20331,0.28297,0.224977,0.434947,0.0160505,0.545691,0.194508,0.0908078,0.620571,0.106289,0.0399944,0.170748,0.20346,0.103961,0.0393064,0.076247,0.00865176,0.000526049,0.00403783,0.0598323,0.671975,0.00409127,0.929921,0.211389,1.21988,0.206545,0.0189112,0.0223957,0.153523,0.0427938,1.31294,0.091485,0.209809,0.108562,0.636557,0.52571,0.55065,0.201078,0.648864,0.150069,0.0305839,0.077366,0.315591,0.115211,0.238269,0.198985,0.0190406,0.239144,0.276192,0.550916,0.310154,0.428427,0.0292598,0.682683,2.1209e-06,0.20828,0.00177862,0.0188638,0.122122,0.144191,0.615877,0.373591,1.07631,0.0696536,0.275405,0.331006,0.141808,2.43442e-06,1.08992,0.0233936,0.157637,0.69383,0.326193,0.443875,0.719451,0.418159,0.0453858,0.278303,0.789311,0.111143,0.35379,0.395716,1.28838,0.103835,0.167502,0.210388,0.459235,0.0061776,0.571839,0.427157,0.0259501,0.0234142,0.0467236,0.503681,0.377122,0.0491535,0.331406,0.52444,0.000508875,0.75956,0.228438,1.25241,0.607665,0.403376,0.229575,1.3564,0.372346,0.300027,0.187353,0.346623,0.275137,0.184505,0.477695,0.713573,0.254877,0.684776,0.347557,0.191879,0.244366,0.213577,0.31117,1.03749,0.66523,2.9846,1.50121,0.35203,0.780235,0.593595,0.64292,0.999616,0.249003,0.0477387,0.07714,6.43114e-08,0.178444,0.201094,0.0860773,0.648076,0.495435,0.515206,0.802428,0.0552641,0.318102,1.38511,0.300536,0.0455302,0.199955,0.97773,0.453806,0.546656,0.0306659
|tfbs_overrepresentation_jaspar=MA0003.1;4.57006e-08,MA0004.1;0.00446905,MA0006.1;0.444338,MA0007.1;1.60838,MA0009.1;0.748631,MA0014.1;2.09049e-07,MA0017.1;0.56105,MA0019.1;1.07987,MA0024.1;0.096271,MA0025.1;0.701715,MA0027.1;1.52347,MA0028.1;0.00959158,MA0029.1;0.293701,MA0030.1;0.301176,MA0031.1;0.0755308,MA0038.1;0.432984,MA0040.1;0.775742,MA0041.1;0.902074,MA0042.1;1.09322,MA0043.1;0.965687,MA0046.1;0.13408,MA0048.1;0.0235044,MA0050.1;0.231554,MA0051.1;0.238993,MA0052.1;0.126319,MA0055.1;0.0375991,MA0056.1;0,MA0057.1;0.0288701,MA0058.1;0.000998232,MA0059.1;0.0309623,MA0060.1;0.0123911,MA0061.1;0.258062,MA0063.1;0,MA0066.1;2.2734,MA0067.1;0.330462,MA0068.1;0.133413,MA0069.1;0.126488,MA0070.1;0.385863,MA0071.1;0.405034,MA0072.1;0.375183,MA0073.1;6.84898e-08,MA0074.1;0.16955,MA0076.1;0.000579748,MA0077.1;0.708233,MA0078.1;0.840585,MA0081.1;0.989396,MA0083.1;0.166483,MA0084.1;0.597622,MA0087.1;0.142877,MA0088.1;0.00514217,MA0089.1;0,MA0090.1;0.244336,MA0091.1;1.81909,MA0092.1;0.0556078,MA0093.1;0.00264918,MA0095.1;0,MA0098.1;0,MA0100.1;0.532499,MA0101.1;0.296921,MA0103.1;0.284677,MA0105.1;0.111219,MA0106.1;0.124951,MA0107.1;0.268118,MA0108.2;0.196117,MA0109.1;0,MA0111.1;0.146328,MA0113.1;0.773723,MA0114.1;0.0942431,MA0115.1;0.972207,MA0116.1;0.0559066,MA0117.1;0.459313,MA0119.1;0.0349894,MA0122.1;0.486442,MA0124.1;0.291845,MA0125.1;0.241033,MA0130.1;0,MA0131.1;0.171164,MA0132.1;0,MA0133.1;0,MA0135.1;0.188143,MA0136.1;2.15735,MA0139.1;0.0139918,MA0140.1;1.13484,MA0141.1;1.21552,MA0142.1;1.35299,MA0143.1;0.82709,MA0144.1;1.37044,MA0145.1;0.0697548,MA0146.1;0.00303872,MA0147.1;0.00355156,MA0148.1;0.559374,MA0149.1;0.480756,MA0062.2;0.0237007,MA0035.2;0.545372,MA0039.2;5.96569e-07,MA0138.2;0.374075,MA0002.2;2.57451,MA0137.2;1.19417,MA0104.2;0.00292075,MA0047.2;0.226054,MA0112.2;0.0697442,MA0065.2;0.0451334,MA0150.1;0.683797,MA0151.1;0,MA0152.1;0.0903459,MA0153.1;0.19819,MA0154.1;0.0654735,MA0155.1;0.00760857,MA0156.1;1.12615,MA0157.1;0.213712,MA0158.1;0,MA0159.1;0.337559,MA0160.1;0.35971,MA0161.1;0,MA0162.1;6.18521e-07,MA0163.1;2.50728e-05,MA0164.1;0.931111,MA0080.2;4.43047,MA0018.2;0.653424,MA0099.2;1.01282,MA0079.2;0,MA0102.2;1.55295,MA0258.1;0.592492,MA0259.1;0.0538026,MA0442.1;0
}}
}}

Revision as of 11:15, 23 January 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:117520003..117520013,-p@chr10:117520003..117520013
-
Mm9::chr10:59835236..59835239,+p@chr10:59835236..59835239
+
Mm9::chr11:117849413..117849445,-p@chr11:117849413..117849445
-
Mm9::chr11:118073163..118073184,-p@chr11:118073163..118073184
-
Mm9::chr11:119737318..119737331,+p@chr11:119737318..119737331
+
Mm9::chr12:83346672..83346688,+p@chr12:83346672..83346688
+
Mm9::chr12:85515884..85515893,-p@chr12:85515884..85515893
-
Mm9::chr12:85558629..85558640,+p@chr12:85558629..85558640
+
Mm9::chr14:45775493..45775518,+p@chr14:45775493..45775518
+
Mm9::chr15:66641702..66641705,-p@chr15:66641702..66641705
-
Mm9::chr15:82825481..82825483,-p@chr15:82825481..82825483
-
Mm9::chr16:48871082..48871092,+p@chr16:48871082..48871092
+
Mm9::chr16:57196765..57196784,-p@chr16:57196765..57196784
-
Mm9::chr16:93722144..93722150,-p@chr16:93722144..93722150
-
Mm9::chr16:95924803..95924807,+p@chr16:95924803..95924807
+
Mm9::chr16:96053449..96053459,+p@chr16:96053449..96053459
+
Mm9::chr17:26651705..26651710,-p@chr17:26651705..26651710
-
Mm9::chr17:28660263..28660272,+p2@ENSMUST00000095448
Mm9::chr17:84518547..84518558,-p@chr17:84518547..84518558
-
Mm9::chr17:84525638..84525656,-p@chr17:84525638..84525656
-
Mm9::chr18:56893743..56893751,+p@chr18:56893743..56893751
+
Mm9::chr19:32255815..32255822,-p@chr19:32255815..32255822
-
Mm9::chr19:32329584..32329599,-p@chr19:32329584..32329599
-
Mm9::chr19:40753809..40753829,+p@chr19:40753809..40753829
+
Mm9::chr19:46693137..46693143,+p@chr19:46693137..46693143
+
Mm9::chr19:46938027..46938040,-p@chr19:46938027..46938040
-
Mm9::chr19:46938046..46938059,-p@chr19:46938046..46938059
-
Mm9::chr19:47036298..47036310,+p@chr19:47036298..47036310
+
Mm9::chr19:47060008..47060022,+p@chr19:47060008..47060022
+
Mm9::chr19:47062299..47062310,-p@chr19:47062299..47062310
-
Mm9::chr19:47062415..47062446,+p@chr19:47062415..47062446
+
Mm9::chr1:152011948..152011956,-p5@ENSMUST00000163840
Mm9::chr1:168269551..168269558,+p@chr1:168269551..168269558
+
Mm9::chr1:196803248..196803253,+p@chr1:196803248..196803253
+
Mm9::chr1:89518093..89518115,-p@chr1:89518093..89518115
-
Mm9::chr2:117751175..117751194,-p@chr2:117751175..117751194
-
Mm9::chr2:117791518..117791537,-p@chr2:117791518..117791537
-
Mm9::chr2:117815963..117815979,+p@chr2:117815963..117815979
+
Mm9::chr2:117837512..117837544,-p@chr2:117837512..117837544
-
Mm9::chr2:126426305..126426331,-p@chr2:126426305..126426331
-
Mm9::chr2:167585848..167585852,+p@chr2:167585848..167585852
+
Mm9::chr2:167602769..167602782,-p@chr2:167602769..167602782
-
Mm9::chr2:172223560..172223565,-p@chr2:172223560..172223565
-
Mm9::chr2:38389209..38389215,+p@chr2:38389209..38389215
+
Mm9::chr2:69220158..69220165,+p@chr2:69220158..69220165
+
Mm9::chr2:69252565..69252576,-p@chr2:69252565..69252576
-
Mm9::chr2:73300486..73300505,-p@chr2:73300486..73300505
-
Mm9::chr3:105950473..105950474,+p@chr3:105950473..105950474
+
Mm9::chr3:131137386..131137389,-p@chr3:131137386..131137389
-
Mm9::chr4:102297935..102297947,+p@chr4:102297935..102297947
+
Mm9::chr4:3576398..3576406,+p@chr4:3576398..3576406
+
Mm9::chr4:95407927..95407931,-p@chr4:95407927..95407931
-
Mm9::chr5:136935850..136935859,-p@chr5:136935850..136935859
-
Mm9::chr5:32435418..32435426,-p2@Gm10463
Mm9::chr5:32436198..32436211,+p@chr5:32436198..32436211
+
Mm9::chr5:33630708..33630712,+p@chr5:33630708..33630712
+
Mm9::chr5:91125117..91125120,-p@chr5:91125117..91125120
-
Mm9::chr5:91125128..91125142,-p@chr5:91125128..91125142
-
Mm9::chr5:91129231..91129236,-p@chr5:91129231..91129236
-
Mm9::chr5:98460114..98460129,+p@chr5:98460114..98460129
+
Mm9::chr5:98460470..98460482,-p14@Antxr2
Mm9::chr5:98460490..98460506,-p@chr5:98460490..98460506
-
Mm9::chr6:136662633..136662635,-p@chr6:136662633..136662635
-
Mm9::chr7:106684550..106684563,-p@chr7:106684550..106684563
-
Mm9::chr7:106684966..106684968,+p@chr7:106684966..106684968
+
Mm9::chr7:147170458..147170467,-p@chr7:147170458..147170467
-
Mm9::chr7:16820748..16820752,-p@chr7:16820748..16820752
-
Mm9::chr7:25230713..25230722,-p7@Irgc1
Mm9::chr7:25242777..25242788,-p@chr7:25242777..25242788
-
Mm9::chr7:25245168..25245178,+p@chr7:25245168..25245178
+
Mm9::chr7:97168148..97168167,-p@chr7:97168148..97168167
-
Mm9::chr7:97171920..97171923,+p@chr7:97171920..97171923
+
Mm9::chr7:97173130..97173134,-p@chr7:97173130..97173134
-
Mm9::chr8:122566661..122566668,-p@chr8:122566661..122566668
-
Mm9::chr8:3659024..3659046,-p@chr8:3659024..3659046
-
Mm9::chr9:45054257..45054261,-p@chr9:45054257..45054261
-
Mm9::chr9:59159588..59159598,+p@chr9:59159588..59159598
+
Mm9::chr9:64651245..64651281,-p@chr9:64651245..64651281
-
Mm9::chr9:96519592..96519622,+p@chr9:96519592..96519622
+
Mm9::chr9:96531044..96531064,-p@chr9:96531044..96531064
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen
multi-potent skeletal muscle stem cell3.30e-159

Disease
Ontology termp-valuen
musculoskeletal system cancer8.97e-443
muscle cancer8.97e-443
organ system cancer2.23e-226


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.14.57006e-08
MA0004.10.00446905
MA0006.10.444338
MA0007.11.60838
MA0009.10.748631
MA0014.12.09049e-07
MA0017.10.56105
MA0019.11.07987
MA0024.10.096271
MA0025.10.701715
MA0027.11.52347
MA0028.10.00959158
MA0029.10.293701
MA0030.10.301176
MA0031.10.0755308
MA0038.10.432984
MA0040.10.775742
MA0041.10.902074
MA0042.11.09322
MA0043.10.965687
MA0046.10.13408
MA0048.10.0235044
MA0050.10.231554
MA0051.10.238993
MA0052.10.126319
MA0055.10.0375991
MA0056.10
MA0057.10.0288701
MA0058.10.000998232
MA0059.10.0309623
MA0060.10.0123911
MA0061.10.258062
MA0063.10
MA0066.12.2734
MA0067.10.330462
MA0068.10.133413
MA0069.10.126488
MA0070.10.385863
MA0071.10.405034
MA0072.10.375183
MA0073.16.84898e-08
MA0074.10.16955
MA0076.10.000579748
MA0077.10.708233
MA0078.10.840585
MA0081.10.989396
MA0083.10.166483
MA0084.10.597622
MA0087.10.142877
MA0088.10.00514217
MA0089.10
MA0090.10.244336
MA0091.11.81909
MA0092.10.0556078
MA0093.10.00264918
MA0095.10
MA0098.10
MA0100.10.532499
MA0101.10.296921
MA0103.10.284677
MA0105.10.111219
MA0106.10.124951
MA0107.10.268118
MA0108.20.196117
MA0109.10
MA0111.10.146328
MA0113.10.773723
MA0114.10.0942431
MA0115.10.972207
MA0116.10.0559066
MA0117.10.459313
MA0119.10.0349894
MA0122.10.486442
MA0124.10.291845
MA0125.10.241033
MA0130.10
MA0131.10.171164
MA0132.10
MA0133.10
MA0135.10.188143
MA0136.12.15735
MA0139.10.0139918
MA0140.11.13484
MA0141.11.21552
MA0142.11.35299
MA0143.10.82709
MA0144.11.37044
MA0145.10.0697548
MA0146.10.00303872
MA0147.10.00355156
MA0148.10.559374
MA0149.10.480756
MA0062.20.0237007
MA0035.20.545372
MA0039.25.96569e-07
MA0138.20.374075
MA0002.22.57451
MA0137.21.19417
MA0104.20.00292075
MA0047.20.226054
MA0112.20.0697442
MA0065.20.0451334
MA0150.10.683797
MA0151.10
MA0152.10.0903459
MA0153.10.19819
MA0154.10.0654735
MA0155.10.00760857
MA0156.11.12615
MA0157.10.213712
MA0158.10
MA0159.10.337559
MA0160.10.35971
MA0161.10
MA0162.16.18521e-07
MA0163.12.50728e-05
MA0164.10.931111
MA0080.24.43047
MA0018.20.653424
MA0099.21.01282
MA0079.20
MA0102.21.55295
MA0258.10.592492
MA0259.10.0538026
MA0442.10
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