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Template:Macroape 1083: Difference between revisions

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<style type="text/css" title="currentStyle">
<style type="text/css" title="currentStyle">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
.rotate90 {
  -webkit-transform: rotate(-90deg);
  -moz-transform: rotate(-90deg);
-webkit-transform-origin: 6px 18px;
-moz-transform-origin: 6px 18px;
}
.rotate90_2 {
  -webkit-transform: rotate(-90deg);
  -moz-transform: rotate(-90deg);
-webkit-transform-origin: 10px 20px;
-moz-transform-origin: 10px 20px;
}
</style>
</style>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
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'''Full Name:''' [[name::{{{name}}}]]
'''Full Name:''' [[name::{{{name}}}]]


<html><img src="/resource_browser/seqlogos/macroape_1083/</html>{{#replace:{{{name}}}|/|_}}<html>.png" width=500>  </html>
<html><img src="/resource_browser/seqlogos/macroape_1083/</html>{{#replace:{{#replace:{{PAGENAMEE}}|/|_}}|:|_}}<html>.png" width=500>  </html>


{| class="wikitable mw-collapsible mw-collapsed" style="width:500px"
{| class="wikitable mw-collapsible mw-collapsed" style="width:500px"
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|}
|}


== p-values for sample ==
== Sample specificity ==
{{#info:The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon}}
{{#info:The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon}}
<html>
<html>
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"aoColumns": [{ "sTitle": "FF samples",  "bSortable": false, "fnRender": function(obj) {
"aoColumns": [{ "sTitle": "FF samples",  "bSortable": false, "fnRender": function(obj) {
return sReturn = '<a href="/resource_browser/index.php/FF:'+obj.aData[ obj.iDataColumn ].split('.').pop()+'">'+decodeURIComponent(obj.aData[ obj.iDataColumn ])+'</a>';
return sReturn = '<a href="/resource_browser/index.php/FF:'+obj.aData[ obj.iDataColumn ].split('.').pop()+'">'+decodeURIComponent(obj.aData[ obj.iDataColumn ])+'</a>';
} },{ "sTitle": "p-value", "sWidth": "50pt" }],
} },{ "sTitle": "p-value",  "sType": "numeric", "sWidth": "50pt" }],
"aaSorting": [[ 1, "asc" ]],
"aaSorting": [[ 1, "asc" ]],
});
});
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<table id="tfbs_overexpression_table"></table>
<table id="tfbs_overexpression_table"></table>
</html>
</html>
== TomTom analysis ==
{{#info:  <br>Analyst: Michiel de Hoon and Hiroko Ohmiya}}
{{#if: {{#pos:{{{tomtom_result}}}|;}} |
<html>
<script type="text/javascript">
$(document).ready(function() {
    $('#tomtom_results').dataTable({
"sScrollY": "300px",
"bPaginate": false,
"bScrollCollapse": true,
"iDisplayLength": -1,
"aaSorting": [[2,'asc']],
"aoColumnDefs": [{"fnRender": function ( o, val ) {var elem = o.aData[0].split("#"); return "<a href=\"http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID="+elem[1]+"&rm=present&collection=CORE\">"+elem[0]+"</a>";}, "aTargets": [ 0 ]}, { "sWidth": "150px", "sType": "numeric", "aTargets": [2,3,4] }]
});
$('#tomtom_results_wrapper .dataTables_scrollHeadInner tr').css("height", "100px").css("vertical-align", "bottom").css("text-align","left");
});
</script>
</html>
<table id="tomtom_results"><html><thead></html>
<tr><th><div class="rotate90"><p>Target_ID</p></div></th><th><div class="rotate90"><p style="width:1px;">Optimal_offset</p></div></th><th><div class="rotate90"><p>p-value</p></div></th><th><div class="rotate90"><p>E-value</p></div></th><th><div class="rotate90"><p>q-value</p></div></th><th><div  class="rotate90"><p style="width:1px;">Overlap</p></div></th><th><div class="rotate90_2">Query<br>consensus</div></th><th ><div class="rotate90_2">Target<br>consensus</div></th><th><div  class="rotate90"><p style="width:1px;">Orientation</p></div></th></tr><html></thead><tbody></html>
{{#arraymap:{{{tomtom_result}}}|!|$
|<tr><td>{{#replace:$|;|</td><td>}}</td></tr>
|}}
<html></tbody></html></table>
|No results for this motif
}}
<!--
{{#arraymap:{{{macroape_1083_sample_pvalues}}}|!|$
|{{#set:Macroape_1083_sample_pvalue=$}}
}}
-->
[[Category:MacroAPE_1083]]

Latest revision as of 10:20, 22 January 2013

Full Name: {{{name}}}

Motif matrix
{{{PWM}}}

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya

No results for this motif