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'''Full Name:''' {{{name}}}
'''Full Name:''' [[name::{{{name}}}]]
 
<html><img src="/resource_browser/seqlogos/macroape_1083/</html>{{#replace:{{#replace:{{PAGENAMEE}}|/|_}}|:|_}}<html>.png" width=500>  </html>


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== p-values for sample ==
== Sample specificity ==
{{#info:The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon}}
{{#info:The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon}}
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hs12340.11523-119I2','Hepatocyte%2c%20donor2.CNhs12349.11603-120I1','Hepatocyte%2c%20donor3.CNhs12626.11684-122I1','Hodgkin%27s%20lymphoma%20cell%20line%3aHD-Mar2.CNhs11715.10435-106E3','Intestinal%20epithelial%20cells%20%28polarized%29%2c%20donor1.CNhs10875.11246-116E4','Iris%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs12596.11530-119I9','Keratinocyte%20-%20epidermal%2c%20donor1.CNhs11064.11272-116H3','Keratinocyte%20-%20epidermal%2c%20donor2.CNhs11381.11349-117G8','Keratinocyte%20-%20epidermal%2c%20donor3.CNhs12031.11421-118F8','Keratinocyte%20-%20oral%2c%20donor1.CNhs10879.11251-116E9','Keratocytes%2c%20donor1.CNhs11337.11527-119I6','Keratocytes%2c%20donor2.CNhs12095.11607-120I5','Lens%20Epithelial%20Cells%2c%20donor1.CNhs12342.11529-119I8','Lens%20Epithelial%20Cells%2c%20donor2.CNhs12568.11609-120I7','Lens%20Epithelial%20Cells%2c%20donor3.CNhs12572.11690-122I7','Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%201%29.CNhs11936.12260-130A1','Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%201%29.CNhs13157.12382-131E6','Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%201%20%29.CNhs13276.12504-133A2','MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep2.CNhs12475.13097-140D1','MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep3.CNhs12703.13163-141B4','Macrophage%20-%20monocyte%20derived%2c%20donor1.CNhs10861.11232-116C8','Macrophage%20-%20monocyte%20derived%2c%20donor2.CNhs11899.11313-117C8','Macrophage%20-%20monocyte%20derived%2c%20donor3.CNhs12003.11389-118C3','Mallassez-derived%20cells%2c%20donor1%20%28MZH3%29.CNhs12538.12142-128E9','Mallassez-derived%20cells%2c%20donor2.CNhs13550.11929-125I3','Mallassez-derived%20cells%2c%20donor3.CNhs13551.11930-125I4','Mammary%20Epithelial%20Cell%2c%20donor1.CNhs11077.11273-116H4','Mammary%20Epithelial%20Cell%2c%20donor2.CNhs11382.11350-117G9','Mammary%20Epithelial%20Cell%2c%20donor3.CNhs12032.11422-118F9','Mast%20cell%20-%20stimulated%2c%20donor1.CNhs11073.11487-119E2','Mast%20cell%2c%20donor1.CNhs12566.11563-120D6','Mast%20cell%2c%20donor2.CNhs12594.11565-120D8','Mast%20cell%2c%20donor3.CNhs12593.11566-120D9','Mast%20cell%2c%20donor4.CNhs12592.11567-120E1','Melanocyte%20-%20dark%2c%20donor3.CNhs12570.11663-122F7','Melanocyte%20-%20light%2c%20donor1.CNhs11303.11274-116H5','Melanocyte%20-%20light%2c%20donor2.CNhs11383.11351-117H1','Melanocyte%20-%20light%2c%20donor3.CNhs12033.11423-118G1','Melanocyte%2c%20donor1%20%28MC%2b1%29.CNhs12816.12641-134G4','Melanocyte%2c%20donor2%20%28MC%2b2%29.CNhs13156.12739-135I3','Melanocyte%2c%20donor3%20%28MC%2b3%29.CNhs13406.12837-137B2','Meningeal%20Cells%2c%20donor1.CNhs11320.11493-119E8','Meningeal%20Cells%2c%20donor2.CNhs12080.11573-120E7','Meningeal%20Cells%2c%20donor3.CNhs12731.11654-122E7','Mesenchymal%20Stem%20Cells%20-%20Wharton%27s%20Jelly%2c%20donor1.CNhs11057.11548-120B9','Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor1.CNhs11345.11537-120A7','Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor3.CNhs12922.11698-123A6','Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor1.CNhs11349.11547-120B8','Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor2.CNhs12104.11627-122B7','Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor1.CNhs11344.11536-120A6','Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor2.CNhs12100.11616-122A5','Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor3.CNhs12126.11697-123A5','Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor2.CNhs12730.11618-122A7','Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor1.CNhs11347.11539-120A9','Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor3.CNhs12127.11700-123A8','Mesenchymal%20stem%20cells%20-%20adipose%2c%20donor0.CNhs10844.11217-116B2','Mesenchymal%20stem%20cells%20-%20hepatic%2c%20donor0.CNhs10845.11218-116B3','Mesenchymal%20stem%20cells%20-%20umbilical%2c%20donor0.CNhs12492.11214-116A8','Mesothelial%20Cells%2c%20donor1.CNhs10850.11247-116E5','Mesothelial%20Cells%2c%20donor2.CNhs12197.12156-128G5','Mesothelial%20Cells%2c%20donor3.CNhs12012.11402-118D7','Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aUd_0h%29.CNhs13646.13317-143A5','Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aUd_0h%29.CNhs13650.13323-143B2','Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aUd_0h%29.CNhs13639.13311-142I8','Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor1.CNhs11350.11549-120C1','Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor2.CNhs12105.11629-122B9','Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20c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hs12340.11523-119I2','Hepatocyte%2c%20donor2.CNhs12349.11603-120I1','Hepatocyte%2c%20donor3.CNhs12626.11684-122I1','Hodgkin%27s%20lymphoma%20cell%20line%3aHD-Mar2.CNhs11715.10435-106E3','Intestinal%20epithelial%20cells%20%28polarized%29%2c%20donor1.CNhs10875.11246-116E4','Iris%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs12596.11530-119I9','Keratinocyte%20-%20epidermal%2c%20donor1.CNhs11064.11272-116H3','Keratinocyte%20-%20epidermal%2c%20donor2.CNhs11381.11349-117G8','Keratinocyte%20-%20epidermal%2c%20donor3.CNhs12031.11421-118F8','Keratinocyte%20-%20oral%2c%20donor1.CNhs10879.11251-116E9','Keratocytes%2c%20donor1.CNhs11337.11527-119I6','Keratocytes%2c%20donor2.CNhs12095.11607-120I5','Lens%20Epithelial%20Cells%2c%20donor1.CNhs12342.11529-119I8','Lens%20Epithelial%20Cells%2c%20donor2.CNhs12568.11609-120I7','Lens%20Epithelial%20Cells%2c%20donor3.CNhs12572.11690-122I7','Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%201%29.CNhs11936.12260-130A1','Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%201%29.CNhs13157.12382-131E6','Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%201%20%29.CNhs13276.12504-133A2','MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep2.CNhs12475.13097-140D1','MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep3.CNhs12703.13163-141B4','Macrophage%20-%20monocyte%20derived%2c%20donor1.CNhs10861.11232-116C8','Macrophage%20-%20monocyte%20derived%2c%20donor2.CNhs11899.11313-117C8','Macrophage%20-%20monocyte%20derived%2c%20donor3.CNhs12003.11389-118C3','Mallassez-derived%20cells%2c%20donor1%20%28MZH3%29.CNhs12538.12142-128E9','Mallassez-derived%20cells%2c%20donor2.CNhs13550.11929-125I3','Mallassez-derived%20cells%2c%20donor3.CNhs13551.11930-125I4','Mammary%20Epithelial%20Cell%2c%20donor1.CNhs11077.11273-116H4','Mammary%20Epithelial%20Cell%2c%20donor2.CNhs11382.11350-117G9','Mammary%20Epithelial%20Cell%2c%20donor3.CNhs12032.11422-118F9','Mast%20cell%20-%20stimulated%2c%20donor1.CNhs11073.11487-119E2','Mast%20cell%2c%20donor1.CNhs12566.11563-120D6','Mast%20cell%2c%20donor2.CNhs12594.11565-120D8','Mast%20cell%2c%20donor3.CNhs12593.11566-120D9','Mast%20cell%2c%20donor4.CNhs12592.11567-120E1','Melanocyte%20-%20dark%2c%20donor3.CNhs12570.11663-122F7','Melanocyte%20-%20light%2c%20donor1.CNhs11303.11274-116H5','Melanocyte%20-%20light%2c%20donor2.CNhs11383.11351-117H1','Melanocyte%20-%20light%2c%20donor3.CNhs12033.11423-118G1','Melanocyte%2c%20donor1%20%28MC%2b1%29.CNhs12816.12641-134G4','Melanocyte%2c%20donor2%20%28MC%2b2%29.CNhs13156.12739-135I3','Melanocyte%2c%20donor3%20%28MC%2b3%29.CNhs13406.12837-137B2','Meningeal%20Cells%2c%20donor1.CNhs11320.11493-119E8','Meningeal%20Cells%2c%20donor2.CNhs12080.11573-120E7','Meningeal%20Cells%2c%20donor3.CNhs12731.11654-122E7','Mesenchymal%20Stem%20Cells%20-%20Wharton%27s%20Jelly%2c%20donor1.CNhs11057.11548-120B9','Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor1.CNhs11345.11537-120A7','Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor3.CNhs12922.11698-123A6','Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor1.CNhs11349.11547-120B8','Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor2.CNhs12104.11627-122B7','Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor1.CNhs11344.11536-120A6','Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor2.CNhs12100.11616-122A5','Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor3.CNhs12126.11697-123A5','Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor2.CNhs12730.11618-122A7','Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor1.CNhs11347.11539-120A9','Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor3.CNhs12127.11700-123A8','Mesenchymal%20stem%20cells%20-%20adipose%2c%20donor0.CNhs10844.11217-116B2','Mesenchymal%20stem%20cells%20-%20hepatic%2c%20donor0.CNhs10845.11218-116B3','Mesenchymal%20stem%20cells%20-%20umbilical%2c%20donor0.CNhs12492.11214-116A8','Mesothelial%20Cells%2c%20donor1.CNhs10850.11247-116E5','Mesothelial%20Cells%2c%20donor2.CNhs12197.12156-128G5','Mesothelial%20Cells%2c%20donor3.CNhs12012.11402-118D7','Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aUd_0h%29.CNhs13646.13317-143A5','Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aUd_0h%29.CNhs13650.13323-143B2','Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aUd_0h%29.CNhs13639.13311-142I8','Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor1.CNhs11350.11549-120C1','Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor2.CNhs12105.11629-122B9','Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20c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var pval = [</html>{{{macroape_1083_filtered_pvalues}}}<html>];
var pvals = ['</html>{{#replace:{{{macroape_1083_sample_pvalues}}}|!|','}}<html>'];
var data = [];
var data = [];
for(i1=0;i1<samples.length;i1++){
for(i1=0;i1<samples.length;i1++){
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}


Line 35: Line 50:
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"aoColumns": [{ "sTitle": "FF samples",  "bSortable": false, "fnRender": function(obj) {
return sReturn = '<a href="/resource_browser/index.php/FF:'+obj.aData[ obj.iDataColumn ].split('.').pop()+'">'+decodeURIComponent(obj.aData[ obj.iDataColumn ])+'</a>';
return sReturn = '<a href="/resource_browser/index.php/FF:'+obj.aData[ obj.iDataColumn ].split('.').pop()+'">'+decodeURIComponent(obj.aData[ obj.iDataColumn ])+'</a>';
} },{ "sTitle": "p-value", "sWidth": "50pt" }],
} },{ "sTitle": "p-value",  "sType": "numeric", "sWidth": "50pt" }],
"aaSorting": [[ 1, "asc" ]],
"aaSorting": [[ 1, "asc" ]],
});
});
Line 44: Line 59:
<table id="tfbs_overexpression_table"></table>
<table id="tfbs_overexpression_table"></table>
</html>
</html>
== TomTom analysis ==
{{#info:  <br>Analyst: Michiel de Hoon and Hiroko Ohmiya}}
{{#if: {{#pos:{{{tomtom_result}}}|;}} |
<html>
<script type="text/javascript">
$(document).ready(function() {
    $('#tomtom_results').dataTable({
"sScrollY": "300px",
"bPaginate": false,
"bScrollCollapse": true,
"iDisplayLength": -1,
"aaSorting": [[2,'asc']],
"aoColumnDefs": [{"fnRender": function ( o, val ) {var elem = o.aData[0].split("#"); return "<a href=\"http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID="+elem[1]+"&rm=present&collection=CORE\">"+elem[0]+"</a>";}, "aTargets": [ 0 ]}, { "sWidth": "150px", "sType": "numeric", "aTargets": [2,3,4] }]
});
$('#tomtom_results_wrapper .dataTables_scrollHeadInner tr').css("height", "100px").css("vertical-align", "bottom").css("text-align","left");
});
</script>
</html>
<table id="tomtom_results"><html><thead></html>
<tr><th><div class="rotate90"><p>Target_ID</p></div></th><th><div class="rotate90"><p style="width:1px;">Optimal_offset</p></div></th><th><div class="rotate90"><p>p-value</p></div></th><th><div class="rotate90"><p>E-value</p></div></th><th><div class="rotate90"><p>q-value</p></div></th><th><div  class="rotate90"><p style="width:1px;">Overlap</p></div></th><th><div class="rotate90_2">Query<br>consensus</div></th><th ><div class="rotate90_2">Target<br>consensus</div></th><th><div  class="rotate90"><p style="width:1px;">Orientation</p></div></th></tr><html></thead><tbody></html>
{{#arraymap:{{{tomtom_result}}}|!|$
|<tr><td>{{#replace:$|;|</td><td>}}</td></tr>
|}}
<html></tbody></html></table>
|No results for this motif
}}
<!--
{{#arraymap:{{{macroape_1083_sample_pvalues}}}|!|$
|{{#set:Macroape_1083_sample_pvalue=$}}
}}
-->
[[Category:MacroAPE_1083]]

Latest revision as of 10:20, 22 January 2013

Full Name: {{{name}}}

Motif matrix
{{{PWM}}}

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya

No results for this motif