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MCL coexpression mm9:608: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002346!7.67e-27!64;UBERON:0003075!7.67e-27!64;UBERON:0007284!7.67e-27!64;UBERON:0000073!2.61e-26!54;UBERON:0001016!8.98e-26!75;UBERON:0001017!3.28e-25!73;UBERON:0001049!1.25e-24!52;UBERON:0005068!1.25e-24!52;UBERON:0006241!1.25e-24!52;UBERON:0007135!1.25e-24!52;UBERON:0004121!8.03e-23!95;UBERON:0000924!8.03e-23!95;UBERON:0006601!8.03e-23!95;UBERON:0010371!2.18e-22!73;UBERON:0000955!3.13e-21!47;UBERON:0006238!3.13e-21!47;UBERON:0003056!3.51e-21!49;UBERON:0002616!2.01e-20!46;UBERON:0010314!2.21e-19!92;UBERON:0003080!4.40e-19!40;UBERON:0002780!3.35e-18!39;UBERON:0001890!3.35e-18!39;UBERON:0006240!3.35e-18!39;UBERON:0002020!2.15e-14!34;UBERON:0003528!2.04e-11!29;UBERON:0002791!2.04e-11!29;UBERON:0001893!2.04e-11!29;UBERON:0002021!3.14e-08!10;UBERON:0000411!3.14e-08!10;UBERON:0001950!3.14e-08!10;UBERON:0001894!3.31e-08!10;UBERON:0006222!3.31e-08!10;UBERON:0002420!5.08e-07!8;UBERON:0007245!5.08e-07!8;UBERON:0010009!5.08e-07!8;UBERON:0010011!5.08e-07!8;UBERON:0000454!5.08e-07!8;UBERON:0002619!5.56e-07!17
|ontology_enrichment_uberon=UBERON:0002346!7.67e-27!64;UBERON:0003075!7.67e-27!64;UBERON:0007284!7.67e-27!64;UBERON:0000073!2.61e-26!54;UBERON:0001016!8.98e-26!75;UBERON:0001017!3.28e-25!73;UBERON:0001049!1.25e-24!52;UBERON:0005068!1.25e-24!52;UBERON:0006241!1.25e-24!52;UBERON:0007135!1.25e-24!52;UBERON:0004121!8.03e-23!95;UBERON:0000924!8.03e-23!95;UBERON:0006601!8.03e-23!95;UBERON:0010371!2.18e-22!73;UBERON:0000955!3.13e-21!47;UBERON:0006238!3.13e-21!47;UBERON:0003056!3.51e-21!49;UBERON:0002616!2.01e-20!46;UBERON:0010314!2.21e-19!92;UBERON:0003080!4.40e-19!40;UBERON:0002780!3.35e-18!39;UBERON:0001890!3.35e-18!39;UBERON:0006240!3.35e-18!39;UBERON:0002020!2.15e-14!34;UBERON:0003528!2.04e-11!29;UBERON:0002791!2.04e-11!29;UBERON:0001893!2.04e-11!29;UBERON:0002021!3.14e-08!10;UBERON:0000411!3.14e-08!10;UBERON:0001950!3.14e-08!10;UBERON:0001894!3.31e-08!10;UBERON:0006222!3.31e-08!10;UBERON:0002420!5.08e-07!8;UBERON:0007245!5.08e-07!8;UBERON:0010009!5.08e-07!8;UBERON:0010011!5.08e-07!8;UBERON:0000454!5.08e-07!8;UBERON:0002619!5.56e-07!17
|tfbs_overrepresentation_for_novel_motifs=0.267173,0.409645,1.27243,0.818969,0.1565,0.847245,1.02601,0.0908011,0.658686,0.336879,0.357058,0.385627,1.05446,0.407615,0.169024,0,0.587245,0.459418,0.279039,0.602977,0.215242,0.235703,0.406794,0.471175,0.701128,1.10486,0.0768517,0.334131,0.191143,0.438367,0.860721,0.683831,0.891038,0.866746,0.169391,0.406983,0.438297,0.382372,0.126724,0.347926,0.153518,0.326286,0.407596,0.508662,0.0677519,0.797213,0.512146,0.34807,0.337012,0.19345,0.570705,0.457464,1.59242,0.82076,0.837732,0.414119,0.200484,0.37415,1.89628,0.412262,0.664611,0.46618,0.104381,0.560059,0.424276,1.45782,0.970969,1.3158,0.660133,1.17005,1.21364,0.0945081,0.102623,0.870406,0.0680008,0.222652,0.233965,0.50152,0.648171,1.171,0.651601,0.60374,0.464847,0.0868537,0.758319,0.0325399,0.237482,0.43877,0.516731,1.47691,1.03946,0.763136,0.696137,0.940863,0.12392,0.11194,1.04257,0.698838,0.512384,1.04626,0.862562,0.683562,0.803823,0.571268,0.57027,1.56637,0.627019,0.344504,0.222586,0.216685,0.723377,0.805555,0.219561,0.361667,1.04639,0.152197,0.136172,0.826326,0.58848,0.43155,0.875675,0.540309,0.434408,0.500675,1.09972,0.651709,0.403884,1.64843,0.969481,0.95011,0.787341,0.296885,0.940498,0.426575,1.06766,0.0212043,1.38011,0.327523,1.01927,1.84381,1.44523,0.975592,0.445463,0.693891,0.564145,0.326684,0.515065,1.80426,1.38746,2.12778,0.201988,0.0825345,0.822286,0.747142,0.425729,0.901933,0.458393,0.178202,1.34621,2.11874,1.02862,0.757491,0.652135,0.25933,0.561023,0.418964,0.436256,0.999079,0.365903
}}
}}

Revision as of 18:37, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:87578204..87578234,+p2@Bzrap1
Mm9::chr17:8717717..8717743,-p@chr17:8717717..8717743
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Mm9::chr1:79432827..79432840,-p@chr1:79432827..79432840
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Mm9::chr1:79432904..79432923,-p@chr1:79432904..79432923
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Mm9::chr1:79436578..79436589,-p3@Scg2
Mm9::chr1:79436590..79436610,-p1@Scg2
Mm9::chr1:79436614..79436655,-p2@Scg2
Mm9::chr3:154327125..154327176,+p1@4922501L14Rik
Mm9::chr3:65106677..65106687,-p3@uc008pkk.1
Mm9::chr8:71080916..71080951,-p@chr8:71080916..71080951
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Mm9::chrX:100551830..100551852,+p2@Chic1
Mm9::chrX:70656436..70656464,+p1@Zfp92


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.36e-0823
neuroblast (sensu Vertebrata)1.36e-0823
neuron1.43e-0833
neuronal stem cell1.43e-0833
neuroblast1.43e-0833
electrically signaling cell1.43e-0833
electrically responsive cell7.28e-0739
electrically active cell7.28e-0739

Uber Anatomy
Ontology termp-valuen
neurectoderm7.67e-2764
neural plate7.67e-2764
presumptive neural plate7.67e-2764
regional part of nervous system2.61e-2654
nervous system8.98e-2675
central nervous system3.28e-2573
neural tube1.25e-2452
neural rod1.25e-2452
future spinal cord1.25e-2452
neural keel1.25e-2452
ectoderm-derived structure8.03e-2395
ectoderm8.03e-2395
presumptive ectoderm8.03e-2395
ecto-epithelium2.18e-2273
brain3.13e-2147
future brain3.13e-2147
pre-chordal neural plate3.51e-2149
regional part of brain2.01e-2046
structure with developmental contribution from neural crest2.21e-1992
anterior neural tube4.40e-1940
regional part of forebrain3.35e-1839
forebrain3.35e-1839
future forebrain3.35e-1839
gray matter2.15e-1434
brain grey matter2.04e-1129
regional part of telencephalon2.04e-1129
telencephalon2.04e-1129
occipital lobe3.14e-0810
visual cortex3.14e-0810
neocortex3.14e-0810
diencephalon3.31e-0810
future diencephalon3.31e-0810
basal ganglion5.08e-078
nuclear complex of neuraxis5.08e-078
aggregate regional part of brain5.08e-078
collection of basal ganglia5.08e-078
cerebral subcortex5.08e-078
regional part of cerebral cortex5.56e-0717


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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