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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001017!2.82e-34!73;UBERON:0001016!3.64e-34!75;UBERON:0010314!9.32e-30!92;UBERON:0004121!9.91e-29!95;UBERON:0000924!9.91e-29!95;UBERON:0006601!9.91e-29!95;UBERON:0000073!6.58e-28!54;UBERON:0001049!2.41e-26!52;UBERON:0005068!2.41e-26!52;UBERON:0006241!2.41e-26!52;UBERON:0007135!2.41e-26!52;UBERON:0002346!9.64e-26!64;UBERON:0003075!9.64e-26!64;UBERON:0007284!9.64e-26!64;UBERON:0000955!6.79e-23!47;UBERON:0006238!6.79e-23!47;UBERON:0002616!1.94e-22!46;UBERON:0010371!2.75e-22!73;UBERON:0002020!3.03e-19!34;UBERON:0003080!4.91e-19!40;UBERON:0002780!1.90e-18!39;UBERON:0001890!1.90e-18!39;UBERON:0006240!1.90e-18!39;UBERON:0003056!2.09e-18!49;UBERON:0003528!4.00e-16!29;UBERON:0002791!4.00e-16!29;UBERON:0001893!4.00e-16!29;UBERON:0000025!1.75e-14!114;UBERON:0004111!2.97e-14!122;UBERON:0000956!6.93e-12!21;UBERON:0001869!6.93e-12!21;UBERON:0000203!6.93e-12!21;UBERON:0002619!1.71e-10!17;UBERON:0003076!7.67e-08!12;UBERON:0003057!7.67e-08!12;UBERON:0002021!1.08e-07!10;UBERON:0000411!1.08e-07!10;UBERON:0001950!1.08e-07!10
|ontology_enrichment_uberon=UBERON:0001017!2.82e-34!73;UBERON:0001016!3.64e-34!75;UBERON:0010314!9.32e-30!92;UBERON:0004121!9.91e-29!95;UBERON:0000924!9.91e-29!95;UBERON:0006601!9.91e-29!95;UBERON:0000073!6.58e-28!54;UBERON:0001049!2.41e-26!52;UBERON:0005068!2.41e-26!52;UBERON:0006241!2.41e-26!52;UBERON:0007135!2.41e-26!52;UBERON:0002346!9.64e-26!64;UBERON:0003075!9.64e-26!64;UBERON:0007284!9.64e-26!64;UBERON:0000955!6.79e-23!47;UBERON:0006238!6.79e-23!47;UBERON:0002616!1.94e-22!46;UBERON:0010371!2.75e-22!73;UBERON:0002020!3.03e-19!34;UBERON:0003080!4.91e-19!40;UBERON:0002780!1.90e-18!39;UBERON:0001890!1.90e-18!39;UBERON:0006240!1.90e-18!39;UBERON:0003056!2.09e-18!49;UBERON:0003528!4.00e-16!29;UBERON:0002791!4.00e-16!29;UBERON:0001893!4.00e-16!29;UBERON:0000025!1.75e-14!114;UBERON:0004111!2.97e-14!122;UBERON:0000956!6.93e-12!21;UBERON:0001869!6.93e-12!21;UBERON:0000203!6.93e-12!21;UBERON:0002619!1.71e-10!17;UBERON:0003076!7.67e-08!12;UBERON:0003057!7.67e-08!12;UBERON:0002021!1.08e-07!10;UBERON:0000411!1.08e-07!10;UBERON:0001950!1.08e-07!10
|tfbs_overrepresentation_for_novel_motifs=1.81543,0.470303,1.68703,0.144583,0.0514566,0.15366,0.615468,0.436916,0.247005,1.51667,2.32892,0.206436,1.43948,0.636202,0.211839,0,0.374352,0.0483719,0.393073,1.00488,0.604268,0.495413,0.63467,0.0508498,0.715008,1.26705,0.0157515,0.167184,0.53096,1.70353,0.477864,0.460285,1.09732,0.809053,2.26244,0.654385,0.680806,0.589223,0.608153,0.515604,0.0498798,0.486105,0.161515,0.214332,3.11273,0.843029,1.5084,1.00921,0.0553373,0.252327,1.6861,0.729809,0.932451,0.586014,1.46504,1.21039,0.559359,0.573993,0.575924,1.20474,1.127,0.746278,0.269556,0.92519,1.2413,0.384144,0.727642,1.06142,0.438956,0.919268,1.59481,0.0971174,2.03698,0.632466,1.5474,0.769781,0.157028,0.300684,0.428247,0.614637,0.0226705,1.78624,0.270104,0.217876,1.3095,3.68353,0.123224,0.255395,0.842295,1.21975,0.793151,0.532634,0.471416,0.198642,0.934714,0.122418,0.0897681,0.473864,0.309859,0.204213,0.0440835,0.460042,0.570262,0.946715,0.359547,1.5038,1.05419,0.174935,0.626635,0.608663,0.744411,0.57187,0.0881503,1.65852,0.799811,0.184628,2.26242,0.450125,0.979825,0.374781,0.637418,0.333667,0.245224,0.299972,0.851175,0.43141,0.220786,0.465518,0.726225,0.446029,0.554981,0.432886,0.698665,0.238902,0.820264,0.0929961,0.78425,0.488358,0.773792,1.58317,1.18855,0.732048,0.254204,0.469382,1.66621,0.944018,0.31213,1.54387,0.125637,0.753189,0.261373,1.7765,0.587436,1.27075,0.238221,0.662158,0.264789,1.28124,0.117954,1.27697,0.782756,0.527439,0.431791,0.365959,0.351524,0.232792,0.380389,0.205322,1.69268
}}
}}

Revision as of 18:12, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:77441365..77441416,+p1@1810043G02Rik
Mm9::chr11:59661542..59661604,+p1@Nt5m
Mm9::chr15:76490121..76490173,-p2@Cyhr1
Mm9::chr15:99556129..99556143,+p5@2310016M24Rik
Mm9::chr15:99556151..99556168,+p3@2310016M24Rik
Mm9::chr16:35769447..35769470,-p1@Dirc2
Mm9::chr17:25922478..25922536,-p1@Haghl
Mm9::chr17:26078871..26078926,-p1@Pigq
Mm9::chr19:46403193..46403258,+p@chr19:46403193..46403258
+
Mm9::chr19:5038847..5038938,+p1@B3gnt1
Mm9::chr19:5457488..5457494,-p2@Ccdc85b
Mm9::chr19:5457504..5457573,-p1@Ccdc85b
Mm9::chr1:167391321..167391370,+p2@Brp44
Mm9::chr2:130275995..130276045,+p1@Ptpra
Mm9::chr2:155102154..155102210,+p1@Map1lc3a
Mm9::chr2:32237429..32237440,-p2@1110008P14Rik
Mm9::chr5:104475937..104475994,+p1@Nudt9
Mm9::chr5:136108566..136108597,+p1@Rhbdd2
Mm9::chr7:150238657..150238668,+p2@Cd81
Mm9::chr7:16683923..16683934,+p2@Napa
Mm9::chr7:26101936..26101987,+p3@Megf8
Mm9::chr9:58100982..58101079,+p1@Stoml1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
central nervous system2.82e-3473
nervous system3.64e-3475
structure with developmental contribution from neural crest9.32e-3092
ectoderm-derived structure9.91e-2995
ectoderm9.91e-2995
presumptive ectoderm9.91e-2995
regional part of nervous system6.58e-2854
neural tube2.41e-2652
neural rod2.41e-2652
future spinal cord2.41e-2652
neural keel2.41e-2652
neurectoderm9.64e-2664
neural plate9.64e-2664
presumptive neural plate9.64e-2664
brain6.79e-2347
future brain6.79e-2347
regional part of brain1.94e-2246
ecto-epithelium2.75e-2273
gray matter3.03e-1934
anterior neural tube4.91e-1940
regional part of forebrain1.90e-1839
forebrain1.90e-1839
future forebrain1.90e-1839
pre-chordal neural plate2.09e-1849
brain grey matter4.00e-1629
regional part of telencephalon4.00e-1629
telencephalon4.00e-1629
tube1.75e-14114
anatomical conduit2.97e-14122
cerebral cortex6.93e-1221
cerebral hemisphere6.93e-1221
pallium6.93e-1221
regional part of cerebral cortex1.71e-1017
posterior neural tube7.67e-0812
chordal neural plate7.67e-0812
occipital lobe1.08e-0710
visual cortex1.08e-0710
neocortex1.08e-0710


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}