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MCL coexpression mm9:344: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005172!3.33e-14!49;UBERON:0005173!3.33e-14!49;UBERON:0002417!3.33e-14!49;UBERON:0000916!3.33e-14!49;UBERON:0004119!8.92e-14!118;UBERON:0000925!8.92e-14!118;UBERON:0006595!8.92e-14!118;UBERON:0001007!5.56e-13!116;UBERON:0001555!5.56e-13!116;UBERON:0007026!5.56e-13!116;UBERON:0002100!2.25e-12!90;UBERON:0005177!2.45e-12!79;UBERON:0004921!2.95e-12!114;UBERON:0009569!7.54e-12!66;UBERON:0002365!1.54e-10!25;UBERON:0002330!1.54e-10!25;UBERON:0003104!3.79e-10!61;UBERON:0009142!3.79e-10!61;UBERON:0000466!4.49e-10!79;UBERON:0009854!7.55e-10!23;UBERON:0009856!7.55e-10!23;UBERON:0005256!8.46e-10!45;UBERON:0002107!2.88e-09!22;UBERON:0007499!2.88e-09!22;UBERON:0006925!2.88e-09!22;UBERON:0009497!2.88e-09!22;UBERON:0000015!2.88e-09!22;UBERON:0002423!2.88e-09!22;UBERON:0006235!2.88e-09!22;UBERON:0008835!2.88e-09!22;UBERON:0003894!2.88e-09!22;UBERON:0004161!2.88e-09!22;UBERON:0008836!2.88e-09!22;UBERON:0000475!9.26e-08!150;UBERON:0005409!2.34e-07!47;UBERON:0000467!6.88e-07!308;UBERON:0000480!6.88e-07!308
|ontology_enrichment_uberon=UBERON:0005172!3.33e-14!49;UBERON:0005173!3.33e-14!49;UBERON:0002417!3.33e-14!49;UBERON:0000916!3.33e-14!49;UBERON:0004119!8.92e-14!118;UBERON:0000925!8.92e-14!118;UBERON:0006595!8.92e-14!118;UBERON:0001007!5.56e-13!116;UBERON:0001555!5.56e-13!116;UBERON:0007026!5.56e-13!116;UBERON:0002100!2.25e-12!90;UBERON:0005177!2.45e-12!79;UBERON:0004921!2.95e-12!114;UBERON:0009569!7.54e-12!66;UBERON:0002365!1.54e-10!25;UBERON:0002330!1.54e-10!25;UBERON:0003104!3.79e-10!61;UBERON:0009142!3.79e-10!61;UBERON:0000466!4.49e-10!79;UBERON:0009854!7.55e-10!23;UBERON:0009856!7.55e-10!23;UBERON:0005256!8.46e-10!45;UBERON:0002107!2.88e-09!22;UBERON:0007499!2.88e-09!22;UBERON:0006925!2.88e-09!22;UBERON:0009497!2.88e-09!22;UBERON:0000015!2.88e-09!22;UBERON:0002423!2.88e-09!22;UBERON:0006235!2.88e-09!22;UBERON:0008835!2.88e-09!22;UBERON:0003894!2.88e-09!22;UBERON:0004161!2.88e-09!22;UBERON:0008836!2.88e-09!22;UBERON:0000475!9.26e-08!150;UBERON:0005409!2.34e-07!47;UBERON:0000467!6.88e-07!308;UBERON:0000480!6.88e-07!308
|tfbs_overrepresentation_for_novel_motifs=0.119369,1.36836,0.104705,0.444236,0.425918,0.15366,0.214952,2.36731,0.247005,0.0552943,0.184424,0.206436,1.04792,0.223743,0.211839,0,0.374352,0.719963,0.202974,0.726362,0.0854539,0.495413,0.223092,0.42246,0.108863,0.243873,0.612988,0.50041,0.070875,0.443023,0.15805,1.16433,0.179513,0.157141,0.21244,0.239233,0.0440547,0.2039,0.144722,0.115421,0.416906,0.486105,2.55827,0.468447,0.113054,0.137727,0.309657,0.177618,1.21544,0.252327,0.359925,0.264025,0.238206,0.586014,1.46504,0.22892,0.264175,0.197526,0.575924,0.227439,0.442975,0.271204,0.804186,0.350689,0.237053,0.384144,0.727642,1.06142,0.438956,0.919268,0.0946191,0.454788,0.0443679,0.632466,0.0127734,0.295983,0.808662,0.300684,0.428247,0.0875778,0.0226705,0.388829,0.270104,0.683588,0.5282,0.00146799,0.00214041,0.685943,1.52233,1.21975,0.793151,0.532634,0.471416,0.439258,0.0351424,0.53819,0.700484,0.473864,0.309859,0.0947155,0.382998,0.460042,0.570262,0.360414,0.359547,0.161095,0.409409,0.174935,0.301886,0.0863521,0.115332,0.57187,1.03451,0.187937,0.799811,0.0491861,0.00328254,0.146927,0.375433,0.164609,0.637418,0.333667,1.96957,0.811709,0.851175,0.43141,0.220786,0.465518,0.726225,1.18711,0.554981,0.140083,0.698665,0.238902,0.820264,0.183848,0.78425,0.488358,0.773792,1.58317,1.18855,0.732048,0.707182,0.469382,0.35423,0.486829,1.51727,1.54387,1.28685,0.193635,0.261373,0.00126457,0.587436,0.30395,0.238221,0.662158,0.264789,0.491663,0.117954,0.124089,0.782756,1.30789,1.10281,0.365959,0.351524,0.232792,0.167532,0.205322,0.0723599
}}
}}

Revision as of 18:12, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:126609088..126609102,+p@chr10:126609088..126609102
+
Mm9::chr11:120359399..120359417,+p@chr11:120359399..120359417
+
Mm9::chr11:78776834..78776858,-p@chr11:78776834..78776858
-
Mm9::chr14:56377145..56377150,-p5@Cideb
Mm9::chr15:103129216..103129239,+p@chr15:103129216..103129239
+
Mm9::chr15:99236280..99236308,+p3@Tmbim6
Mm9::chr15:99238959..99238984,+p@chr15:99238959..99238984
+
Mm9::chr16:11805078..11805091,-p@chr16:11805078..11805091
-
Mm9::chr16:17925854..17925892,-p@chr16:17925854..17925892
-
Mm9::chr19:45066815..45066834,+p@chr19:45066815..45066834
+
Mm9::chr19:45066921..45066946,+p@chr19:45066921..45066946
+
Mm9::chr1:173059851..173059876,-p@chr1:173059851..173059876
-
Mm9::chr1:74442224..74442252,+p@chr1:74442224..74442252
+
Mm9::chr3:130937075..130937100,-p@chr3:130937075..130937100
-
Mm9::chr3:95124069..95124087,+p10@Lass2
Mm9::chr3:95124089..95124125,+p5@Lass2
Mm9::chr4:40131983..40132022,+p@chr4:40131983..40132022
+
Mm9::chr7:106305561..106305588,-p@chr7:106305561..106305588
-
Mm9::chr7:19846337..19846356,-p4@Vasp
Mm9::chr7:86441901..86441934,+p@chr7:86441901..86441934
+
Mm9::chr7:86441991..86442025,+p@chr7:86441991..86442025
+
Mm9::chr9:108847397..108847459,+p@chr9:108847397..108847459
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
abdomen element3.33e-1449
abdominal segment element3.33e-1449
abdominal segment of trunk3.33e-1449
abdomen3.33e-1449
endoderm-derived structure8.92e-14118
endoderm8.92e-14118
presumptive endoderm8.92e-14118
digestive system5.56e-13116
digestive tract5.56e-13116
primitive gut5.56e-13116
trunk2.25e-1290
trunk region element2.45e-1279
subdivision of digestive tract2.95e-12114
subdivision of trunk7.54e-1266
exocrine gland1.54e-1025
exocrine system1.54e-1025
mesenchyme3.79e-1061
entire embryonic mesenchyme3.79e-1061
immaterial anatomical entity4.49e-1079
digestive tract diverticulum7.55e-1023
sac7.55e-1023
trunk mesenchyme8.46e-1045
liver2.88e-0922
epithelial sac2.88e-0922
digestive gland2.88e-0922
epithelium of foregut-midgut junction2.88e-0922
anatomical boundary2.88e-0922
hepatobiliary system2.88e-0922
foregut-midgut junction2.88e-0922
hepatic diverticulum2.88e-0922
liver primordium2.88e-0922
septum transversum2.88e-0922
liver bud2.88e-0922
organism subdivision9.26e-08150
gastrointestinal system2.34e-0747
anatomical system6.88e-07308
anatomical group6.88e-07308


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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