Coexpression cluster:C1624: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 8: | Line 8: | ||
|tf_chipseq_enrich=CCNT2#905;5:6.33620157696263:9.78880505817628e-05:0.00138847346390177!CHD2#1106;5:10.3440228341169:8.43981772346334e-06:0.000230022474744465!E2F1#1869;5:4.90738921487932:0.000351281809925646:0.00352155125233486!E2F6#1876;4:4.01372458535791:0.00663211823393388:0.0282865110562266!EGR1#1958;5:4.98817909481014:0.000323739800059071:0.00330379724236558!ELF1#1997;5:4.25809795880754:0.000714241693977684:0.00572484177109251!FOS#2353;5:8.9979553088944:1.69470025615156e-05:0.000388653491550753!GABPB1#2553;5:7.06768383618217:5.6685482528729e-05:0.000947834631735178!GATA1#2623;5:13.5603081438004:2.17950082879909e-06:7.83292797862863e-05!GATA2#2624;5:12.744931733554:2.9719152914525e-06:0.000101069313293392!HMGN3#9324;5:8.17854772335059:2.73180911341838e-05:0.000581310945387738!IRF3#3661;5:46.9819522114896:4.35776524686345e-09:3.54179489974452e-07!MAFK#7975;5:27.1007331378299:6.83095404221442e-08:4.15019202568256e-06!MXI1#4601;5:9.9615716287593:1.01894348670516e-05:0.00026644326191287!NANOG#79923;5:29.2447784810127:4.66760911383881e-08:3.03726123514151e-06!NFYA#4800;5:18.4255806998305:4.70418681889082e-07:2.2220740261336e-05!NFYB#4801;5:16.7597932535365:7.55590255814554e-07:3.32265645166384e-05!REST#5978;3:5.79001722967681:0.00946878869443394:0.0356865801471613!SP1#6667;5:5.6983813781409:0.00016639184371255:0.00204012652799895!SP2#6668;5:26.1535304938446:8.16125998835445e-08:4.87337811277159e-06!SREBF1#6720;5:47.0058494404883:4.34669369311096e-09:3.538303527785e-07!SRF#6722;4:11.0377426097342:0.000129925581484675:0.00170984095321043!TAF1#6872;5:3.34304628574529:0.00239460009087031:0.0135125156089477!TFAP2A#7020;3:9.91118062382697:0.00202154697751128:0.0117437059063467!TFAP2C#7022;3:6.48553716591613:0.00685895151794:0.0290511005589316!THAP1#55145;5:31.3691446028513:3.28679666061441e-08:2.20894309162103e-06!TRIM28#10155;3:11.1543150271575:0.00143315927152925:0.00920074509215905!ZBTB7A#51341;5:7.3519093078759:4.65425347594289e-05:0.000815032828259556!ZNF263#10127;5:8.22184163701068:2.6606316672286e-05:0.000570465429467641 | |tf_chipseq_enrich=CCNT2#905;5:6.33620157696263:9.78880505817628e-05:0.00138847346390177!CHD2#1106;5:10.3440228341169:8.43981772346334e-06:0.000230022474744465!E2F1#1869;5:4.90738921487932:0.000351281809925646:0.00352155125233486!E2F6#1876;4:4.01372458535791:0.00663211823393388:0.0282865110562266!EGR1#1958;5:4.98817909481014:0.000323739800059071:0.00330379724236558!ELF1#1997;5:4.25809795880754:0.000714241693977684:0.00572484177109251!FOS#2353;5:8.9979553088944:1.69470025615156e-05:0.000388653491550753!GABPB1#2553;5:7.06768383618217:5.6685482528729e-05:0.000947834631735178!GATA1#2623;5:13.5603081438004:2.17950082879909e-06:7.83292797862863e-05!GATA2#2624;5:12.744931733554:2.9719152914525e-06:0.000101069313293392!HMGN3#9324;5:8.17854772335059:2.73180911341838e-05:0.000581310945387738!IRF3#3661;5:46.9819522114896:4.35776524686345e-09:3.54179489974452e-07!MAFK#7975;5:27.1007331378299:6.83095404221442e-08:4.15019202568256e-06!MXI1#4601;5:9.9615716287593:1.01894348670516e-05:0.00026644326191287!NANOG#79923;5:29.2447784810127:4.66760911383881e-08:3.03726123514151e-06!NFYA#4800;5:18.4255806998305:4.70418681889082e-07:2.2220740261336e-05!NFYB#4801;5:16.7597932535365:7.55590255814554e-07:3.32265645166384e-05!REST#5978;3:5.79001722967681:0.00946878869443394:0.0356865801471613!SP1#6667;5:5.6983813781409:0.00016639184371255:0.00204012652799895!SP2#6668;5:26.1535304938446:8.16125998835445e-08:4.87337811277159e-06!SREBF1#6720;5:47.0058494404883:4.34669369311096e-09:3.538303527785e-07!SRF#6722;4:11.0377426097342:0.000129925581484675:0.00170984095321043!TAF1#6872;5:3.34304628574529:0.00239460009087031:0.0135125156089477!TFAP2A#7020;3:9.91118062382697:0.00202154697751128:0.0117437059063467!TFAP2C#7022;3:6.48553716591613:0.00685895151794:0.0290511005589316!THAP1#55145;5:31.3691446028513:3.28679666061441e-08:2.20894309162103e-06!TRIM28#10155;3:11.1543150271575:0.00143315927152925:0.00920074509215905!ZBTB7A#51341;5:7.3519093078759:4.65425347594289e-05:0.000815032828259556!ZNF263#10127;5:8.22184163701068:2.6606316672286e-05:0.000570465429467641 | ||
|tfbs_overrepresentation=0.23317,0.0958562,0.351299,0.078254,0.310241,0.43203,0.0706464,0.0615998,0.0539364,0.0424746,0.221396,0.00937052,0.294377,0.201017,0.235304,0.101024,0.223746,0.158251,0.0865245,0.173528,0.29418,0.211047,0.13286,0.153106,0.0683222,0.062762,0.324018,0.146582,0.227906,0.150721,0.31768,0.182756,0.0298713,0.322378,0.108398,0.136785,0.856615,0.070583,0.192426,0.108683,0.155571,0.0406818,0.222325,0.287476,0.193292,0.0596699,0.0625547,0.28382,0.178503,0.193726,0.243359,0.0886583,0.114185,0.150136,0.308837,0.0632035,0.172598,0.061176,0.127101,0.169687,0.0485674,0.236408,0.174369,0.123348,0.0892839,0.0827236,0.515105,0.0980005,0.139298,0.262613,0.547889,0.110232,0.143944,0.190944,0.012429,0.0283664,0.155593,0.0717582,0.0613084,0.0120583,0.154245,0.348799,0.0698251,0.0180709,0.0206187,0.38341,0.104918,0.323505,0.790836,0.102375,0.138802,0.0812726,0.153861,0.0777027,0.138224,0.184264,0.0613695,0.242703,0.149747,0.413729,0.0939617,0.416542,0.225088,0.0610111,0.337778,0.0672793,0.109136,0.497282,0.228612,0.01619,0.285407,0.0560173,0.23661,0.0293017,0.162943,0.0556189,0.0336673,0.0926302,0.220791,0.13579,0.262107,0.331577,0.222452,0.138843,0.164723,0.277102,0.146529,0.0245339,0.136609,0.214614,0.0973103,0.121587,0.0935301,0.0376876,0.200735,0.173595,0.105753,0.0905147,0.0544577,0.0065834,0.037671,0.203496,0.316207,0.246229,0.779726,0.112838,0.159217,0.1364,0.0640569,0.193163,0.311509,0.227801,0.282656,0.0439093,0.070163,0.188135,0.121467,0.350865,0.0846706,0.0555742,0.349932,0.153706,0.186743,0.23397,0.412853,0.183121,0.065826,0.203135,0.0663482,0.463935,0.281162,0.218835,0.278686,0.0885874,0.129639,0.145577,0.22277,0.284267,0.27935,0.0586816,0.250461,0.195671,0.0452583,0.185103,0.11983,0.019342,0.286036,0.0660586,0.134265,0.272191,0.172119,0.292239,0.196376,0.351465,0.18064,0.0772176,0.126988,0.0984435,0.110187,0.176022,0.144361,0.0986228,0.0508565,0.0989516,0.21691,0.393782,0.412989,0.240045,0.319604,0.0432208,0.0752697,0.167805,0.193654,0.180992,0.464566,0.265567,0.258402,0.162511,0.102771,0.165687,0.225173,0.540012,0.246322,0.253699,0.120044,0.201982,0.220536,0.139142,0.0987108,0.09782,0.410084,0.554981,0.0687568,0.124225,0.1547,0.150448,0.0774663,0.0928873,0.257365,0.331711,0.285222,0.511,0.158559,0.134615,0.186192,0.217494,0.132125,0.179065,0.183141,0.187334,0.250769,0.289141,0.289982,0.157983,0.158078,0.251693,0.172268,0.313249,0.113261,0.766691,0.101058,0.274448,0.25718,0.204241,0.0568578,0.131428,0.131579,0.148683,0.188945,0.122666,0.419402,0.103245,0.387442,0.627158,0.14011,0.0626022,0.2074,0.182534,0.345431,0.252309,0.50169,0.748392,0.328801,0.0222115,0.493893,0.808889,0.396701,0.626645,0.541514,0.460217,0.675971,0.487888,0.568246,0.486439,0.720623,0.796904,0.410803,0.43779,0.579996,0.207055,0.766049,0.447317,0.292173,0.528152,0.284119,0.601223,0.176507,0.488132,0.336705,0.604733,0.545464,0.645432,0.824163,0.714193,0.126184,0.537972,0.591562,0.00552477,0.385794,0.417358,0.450485,0.665656,0.470142,0.344006,0.688397,0.785741,0.426591,0.467379,0.420732,0.437202,0.628658,0.0574696,0.592924,0.438692,0.660225,0.619033,0.541742,0.17537,0.463603,0.285074,0.0565206,0.780462,0.00928443,0.415372,0.362164,0.289863,0.0351913,0.365484,0.409489,0.80581,0.113112,0.699429,0.707862,0.379008,0.423719,0.655494,0.256985,0.109234,0.11883,0.288602,0.779806,0.429909,0.766165,0.588284,0.284078,0.732646,0.386101,0.628596,0.337121,0.464864,0.139288,0.0740433,0.121457,0.351733,0.522291,0.186962,0.687274,0.441154,0.503865,0.660832,0.43388,0.483295,0.852766,0.418989,0.00728619,0.606622,0.350461,0.495024,0.307173,0.246694,0.752605,0.598317,0.666615,0.597346,0.702113,0.00202154,0.493489,0.229501,0.230597,0.555864,0.18637,0.627794,0.641833,0.383956,0.241286,0.0764074,0.217887,0.393543,0.214395,0.158849,0.732038,0.439833,0.427746,0.504398,0.456725,0.455709,0.784142,0.324888,0.708682,0.427794,0.398041,0.524026,0.347879,0.58021,0.593219,0.529253,0.64728,0.031869,0.319495,0.711229,0.257888,0.616333,0.407113,0.498776,0.738012,0.423517,0.224914,0.636791,0.706243,0.251608,0.365107,0.539805,0.356278,0.295455,0.144104,0.0972855,0.352039,0.0838659,0.508875,0.725283,0.512109,0.658411,0.578577,0.0300273,0.809533,0.469232,0.113555,0.00427905,0.299839,0.126587,0.000149367,0.22877,0.343849,0.315824,0.622796,0.00324187,0.29873,0.179502,0.43406,0.0715061,0.452515,0.201779,0.214491,0.171725,0.0169414,0.102448,0.550877,0.029672,0.453305,0.421335,0.561724,0.0762646,0.266371,0.183582,0.168118,0.145381,0.140277,0.251925,0.172066,0.0720324,0.00647589,0.19738,0.205854,0.32541,0.301472,0.507714,0.0818982,0.134306,0.108669,0.284804,0.178494,0.338195,0.490571,0.304235,0.210475,0.000465922,0.0790025,0.310539,0.580279,0.203728,0.275452,0.288155,0.265827,0.141761,0.153627,0.0186891,0.342497,0.171961,0.415228,0.00800917,0.272406,0.223952,0.327153,0.0496113,0.20949,0.0730994,0.0857377,0.323267,0.24204,0.129414,0.157037,0.252398,0.197279,0.146467,0.0912686,0.425114,5.37461e-06,0.218241,0.0242146,0.10708,0.327369,0.339826,0.12998,0.123097,0.254847,0.300809,0.0898207,0.126545,0.0918749,0.0686325,0.0569043,0.0639461,0.387306,0.267408,0.312064,0.080156,0.274185,0.53753,0.0545112,0.160961,0.33844,0.0649137,0.0974216,0.595767,0.195675,0.174786,0.176557,0.396547,0.0472148,0.735114,0.229138,0.0639045,0.141461,0.0900204,0.00239454,0.385962,0.334921,0.296227,0.208788,0.0104864,0.36304,2.75722e-05,0.123626,0.270619,0.132705,0.285556,0.493429,0.233835,0.224471,0.262929,0.223204,0.143824,0.460679,0.431098,0.0775891,0.153079,0.62577,0.211515,0.125701,0.175283,0.204954,0.209341,0.855975,0.0185433,0.084895,0.160115,0.0819954,0.10091,0.122658,0.151161,0.228398,0.056055,0.120552,0.41771,0.655862,0.529713,0.335207,0.434016,0.190688,0.000505851,0.278645,0.733648,0.0940982,0.0780533,0.564811,0.0993772,0.274769,0.448923,0.11602,0.344528,0.436413,0.0585992,0.20045,0.274438,0.0225031,0.000957949,0.319826,0.336512,0.173868,0.109708,0.174594,0.0809806,0.154589,0.318794,0.122767,0.0749261,0.176858,0.114361,0.347759,0.242462,0.0620267,0.211111,0.0738743,0.0882327,0.183058,0.150073,0.270522,0.16872,0.341388,0.0934526,0.359135,0.123404,0.0196604,0.0316547,0.3033,0.0643653,0.163542,0.483244,0.27134,0.500871,0.239667,0.10226,0.29809,0.0301117,0.00132511,0.245965,0.116923,0.148426,0.0983658,0.228743,0.238223,0.156976,0.244789,0.267391,0.301441,0.21807,0.350528,0.382904,0.432408,0.190404,0.135865,0.488841,0.18137,0.180609,0.291283,0.273972,0.153023,0.400137,0.37958,0.22307,0.160699,0.391307,0.166736,0.181253,0.0422294,0.263877,0.146486,0.431348,0.262486,0.294204,0.00911376,0.288826,0.246621,0.463617,0.697373,0.0965376,0.377203,0.279263,0.336564,0.35463,0.581771,0.800557,0.0594155,0.587524,0.208795,0.0713793,0.212621,0.594469,0.1798,0.0791056,0.581874,0.355154,0.730614,0.251388,0.537088,0.603804,0.629445,0.306963,0.206759,0.526495,0.580285,0.550495,0.424482,0.820986,0.610475,0.00638184,0.561689,0.0269405,0.00125038,0.623136,0.708698,0.00950745,0.445257,0.349068,0.70429,0.798758,0.557035,0.427789,0.689998,0.386595,0.0700328,0.433702,0.258394,0.644878,0.432123,0.759415,0.661773,0.494975,0.0903515,0.0895484,0.259088,0.371758,0.71344,0.562417,0.183098,0.570752,0.254547,0.673352,0.821811,0.680843,0.500384,0.541378,0.47213,0.0243913,0.723387,0.898765,0.446908,0.315485,0.311289,0.0572024,0.4488,0.389888,0.603509,0.511254,0.553178,0.246387,0.224252,0.0603905,0.155054,0.466978,0.518234,0.257848,0.353942,0.192234,0.427276,0.00295893,0.466967,0.283682,0.424668,0.462212,0.474058,0.583101,0.702164,0.477016,0.263776,0.498956,0.00553884,0.55798,0.349033,0.0205893,0.723248,0.34194,0.592696,0.592314,0.27725,0.380115,0.763919,0.317485,0.633504,0.220564,0.845182,0.262394,0.307462,0.135076,0.469588,0.664443,0.274593,0.490712,0.541363,0.709432,0.583627,0.531474,0.720644,0.562305,0.0010781,0.361524,0.31558,0.412744,0.54408,0.62698,0.0367094,0.415367,1.14436e-05,0.45585,0.36864,0.538745,0.456862,0.453004,0.00116776,0.00964276,0.693441,0.382214,0.553161,0.639572,0.68995,0.339393,0.694478,0.306231,0.298354,0.646049,0.784543,0.457741,0.641611,0.426239,0.162155,0.289012,0.572661,0.412586,0.534679,0.41502,0.55475,0.66153,0.523749,0.499347,0.307426,0.206772,0.196912,0.490527,0.132075,0.44799,0.00173749,0.318338,0.276338,0.126433,0.417412,0.318174,0.0555558,0.295666,0.393022,0.293641,0.116969,0.401231,0.255983,0.297663,0.256708,0.338258,0.322052,0.145568,0.153833,0.261242,0.38389,0.54721,0.388459,0.321362,0.627637,0.280757,0.301366,0.340343,0.343265,0.0337506,0.462092,0.336254,0.308589,0.291523,0.19697,0.309816,0.0537285,0.15063,0.0210584,0.281455,0.348739,0.419895,0.138495,0.208834,0.0587417,0.377566,0.342366,0.109684,0.322704,0.403482,0.181288,0.230841,0.352328,0.255358,0.351665,0.265112,0.0633313,0.10772,0.0854747,0.0747609,0.406458,0.312881,0.0365105,0.244656,0.192188,0.158985,0.174153,0.0972854,0.333309,0.249919,0.339517,0.303699,0.198326,0.0144647,0.0244644,0.282501,0.252005,0.390891,0.238377,0.334983,0.197875,0.287909,0.289389,0.117618,0.392533,0.396962,0.316002,0.330317,0.0582923,0.225079,0.050521,0.379651,0.185715,0.345505,0.375521,0.271405,0.311201,0.221943,0.306427,0.367733,0.246925,0.208775,0.390438,0.343014,0.270094,0.276922,0.156279,0.313647,0.461742,0.10563,0.336468,0.13327,0.313545,0.17149,0.0877361,0.0880065,0.238969,0.126615,0.0669467,0.0879453,0.474066,0.396935,0.326779,0.292869,0.358198,0.29552,0.131776,0.158116,0.104606,0.194814,0.104167,0.168186,0.108081,0.123829,0.205215,0.175247,0.0724304,0.109077,0.144842,0.0604892,0.214671,0.316879,0.442567,0.430541,0.0354176,0.224871,0.398887,0.088016,0.310732,0.349611,0.445995,0.385709,0.278202,0.426488,0.400591,0.209809,0.253154,0.319519,0.309489,0.430805,0.0753413,0.480785,0.185476,0.336314,0.344469,0.184651,0.303359,0.297596,0.42392,0.425912,0.380826,0.259046,0.345068,0.151046,0.483953,0.347171,0.321735,0.15463,0.13907,0.470121,0.269432,0.250466,0.409882,0.115686,0.408975,0.162633,0.342661,0.27567,0.248127,0.33299,0.384731,0.319112,0.526476 | |tfbs_overrepresentation=0.23317,0.0958562,0.351299,0.078254,0.310241,0.43203,0.0706464,0.0615998,0.0539364,0.0424746,0.221396,0.00937052,0.294377,0.201017,0.235304,0.101024,0.223746,0.158251,0.0865245,0.173528,0.29418,0.211047,0.13286,0.153106,0.0683222,0.062762,0.324018,0.146582,0.227906,0.150721,0.31768,0.182756,0.0298713,0.322378,0.108398,0.136785,0.856615,0.070583,0.192426,0.108683,0.155571,0.0406818,0.222325,0.287476,0.193292,0.0596699,0.0625547,0.28382,0.178503,0.193726,0.243359,0.0886583,0.114185,0.150136,0.308837,0.0632035,0.172598,0.061176,0.127101,0.169687,0.0485674,0.236408,0.174369,0.123348,0.0892839,0.0827236,0.515105,0.0980005,0.139298,0.262613,0.547889,0.110232,0.143944,0.190944,0.012429,0.0283664,0.155593,0.0717582,0.0613084,0.0120583,0.154245,0.348799,0.0698251,0.0180709,0.0206187,0.38341,0.104918,0.323505,0.790836,0.102375,0.138802,0.0812726,0.153861,0.0777027,0.138224,0.184264,0.0613695,0.242703,0.149747,0.413729,0.0939617,0.416542,0.225088,0.0610111,0.337778,0.0672793,0.109136,0.497282,0.228612,0.01619,0.285407,0.0560173,0.23661,0.0293017,0.162943,0.0556189,0.0336673,0.0926302,0.220791,0.13579,0.262107,0.331577,0.222452,0.138843,0.164723,0.277102,0.146529,0.0245339,0.136609,0.214614,0.0973103,0.121587,0.0935301,0.0376876,0.200735,0.173595,0.105753,0.0905147,0.0544577,0.0065834,0.037671,0.203496,0.316207,0.246229,0.779726,0.112838,0.159217,0.1364,0.0640569,0.193163,0.311509,0.227801,0.282656,0.0439093,0.070163,0.188135,0.121467,0.350865,0.0846706,0.0555742,0.349932,0.153706,0.186743,0.23397,0.412853,0.183121,0.065826,0.203135,0.0663482,0.463935,0.281162,0.218835,0.278686,0.0885874,0.129639,0.145577,0.22277,0.284267,0.27935,0.0586816,0.250461,0.195671,0.0452583,0.185103,0.11983,0.019342,0.286036,0.0660586,0.134265,0.272191,0.172119,0.292239,0.196376,0.351465,0.18064,0.0772176,0.126988,0.0984435,0.110187,0.176022,0.144361,0.0986228,0.0508565,0.0989516,0.21691,0.393782,0.412989,0.240045,0.319604,0.0432208,0.0752697,0.167805,0.193654,0.180992,0.464566,0.265567,0.258402,0.162511,0.102771,0.165687,0.225173,0.540012,0.246322,0.253699,0.120044,0.201982,0.220536,0.139142,0.0987108,0.09782,0.410084,0.554981,0.0687568,0.124225,0.1547,0.150448,0.0774663,0.0928873,0.257365,0.331711,0.285222,0.511,0.158559,0.134615,0.186192,0.217494,0.132125,0.179065,0.183141,0.187334,0.250769,0.289141,0.289982,0.157983,0.158078,0.251693,0.172268,0.313249,0.113261,0.766691,0.101058,0.274448,0.25718,0.204241,0.0568578,0.131428,0.131579,0.148683,0.188945,0.122666,0.419402,0.103245,0.387442,0.627158,0.14011,0.0626022,0.2074,0.182534,0.345431,0.252309,0.50169,0.748392,0.328801,0.0222115,0.493893,0.808889,0.396701,0.626645,0.541514,0.460217,0.675971,0.487888,0.568246,0.486439,0.720623,0.796904,0.410803,0.43779,0.579996,0.207055,0.766049,0.447317,0.292173,0.528152,0.284119,0.601223,0.176507,0.488132,0.336705,0.604733,0.545464,0.645432,0.824163,0.714193,0.126184,0.537972,0.591562,0.00552477,0.385794,0.417358,0.450485,0.665656,0.470142,0.344006,0.688397,0.785741,0.426591,0.467379,0.420732,0.437202,0.628658,0.0574696,0.592924,0.438692,0.660225,0.619033,0.541742,0.17537,0.463603,0.285074,0.0565206,0.780462,0.00928443,0.415372,0.362164,0.289863,0.0351913,0.365484,0.409489,0.80581,0.113112,0.699429,0.707862,0.379008,0.423719,0.655494,0.256985,0.109234,0.11883,0.288602,0.779806,0.429909,0.766165,0.588284,0.284078,0.732646,0.386101,0.628596,0.337121,0.464864,0.139288,0.0740433,0.121457,0.351733,0.522291,0.186962,0.687274,0.441154,0.503865,0.660832,0.43388,0.483295,0.852766,0.418989,0.00728619,0.606622,0.350461,0.495024,0.307173,0.246694,0.752605,0.598317,0.666615,0.597346,0.702113,0.00202154,0.493489,0.229501,0.230597,0.555864,0.18637,0.627794,0.641833,0.383956,0.241286,0.0764074,0.217887,0.393543,0.214395,0.158849,0.732038,0.439833,0.427746,0.504398,0.456725,0.455709,0.784142,0.324888,0.708682,0.427794,0.398041,0.524026,0.347879,0.58021,0.593219,0.529253,0.64728,0.031869,0.319495,0.711229,0.257888,0.616333,0.407113,0.498776,0.738012,0.423517,0.224914,0.636791,0.706243,0.251608,0.365107,0.539805,0.356278,0.295455,0.144104,0.0972855,0.352039,0.0838659,0.508875,0.725283,0.512109,0.658411,0.578577,0.0300273,0.809533,0.469232,0.113555,0.00427905,0.299839,0.126587,0.000149367,0.22877,0.343849,0.315824,0.622796,0.00324187,0.29873,0.179502,0.43406,0.0715061,0.452515,0.201779,0.214491,0.171725,0.0169414,0.102448,0.550877,0.029672,0.453305,0.421335,0.561724,0.0762646,0.266371,0.183582,0.168118,0.145381,0.140277,0.251925,0.172066,0.0720324,0.00647589,0.19738,0.205854,0.32541,0.301472,0.507714,0.0818982,0.134306,0.108669,0.284804,0.178494,0.338195,0.490571,0.304235,0.210475,0.000465922,0.0790025,0.310539,0.580279,0.203728,0.275452,0.288155,0.265827,0.141761,0.153627,0.0186891,0.342497,0.171961,0.415228,0.00800917,0.272406,0.223952,0.327153,0.0496113,0.20949,0.0730994,0.0857377,0.323267,0.24204,0.129414,0.157037,0.252398,0.197279,0.146467,0.0912686,0.425114,5.37461e-06,0.218241,0.0242146,0.10708,0.327369,0.339826,0.12998,0.123097,0.254847,0.300809,0.0898207,0.126545,0.0918749,0.0686325,0.0569043,0.0639461,0.387306,0.267408,0.312064,0.080156,0.274185,0.53753,0.0545112,0.160961,0.33844,0.0649137,0.0974216,0.595767,0.195675,0.174786,0.176557,0.396547,0.0472148,0.735114,0.229138,0.0639045,0.141461,0.0900204,0.00239454,0.385962,0.334921,0.296227,0.208788,0.0104864,0.36304,2.75722e-05,0.123626,0.270619,0.132705,0.285556,0.493429,0.233835,0.224471,0.262929,0.223204,0.143824,0.460679,0.431098,0.0775891,0.153079,0.62577,0.211515,0.125701,0.175283,0.204954,0.209341,0.855975,0.0185433,0.084895,0.160115,0.0819954,0.10091,0.122658,0.151161,0.228398,0.056055,0.120552,0.41771,0.655862,0.529713,0.335207,0.434016,0.190688,0.000505851,0.278645,0.733648,0.0940982,0.0780533,0.564811,0.0993772,0.274769,0.448923,0.11602,0.344528,0.436413,0.0585992,0.20045,0.274438,0.0225031,0.000957949,0.319826,0.336512,0.173868,0.109708,0.174594,0.0809806,0.154589,0.318794,0.122767,0.0749261,0.176858,0.114361,0.347759,0.242462,0.0620267,0.211111,0.0738743,0.0882327,0.183058,0.150073,0.270522,0.16872,0.341388,0.0934526,0.359135,0.123404,0.0196604,0.0316547,0.3033,0.0643653,0.163542,0.483244,0.27134,0.500871,0.239667,0.10226,0.29809,0.0301117,0.00132511,0.245965,0.116923,0.148426,0.0983658,0.228743,0.238223,0.156976,0.244789,0.267391,0.301441,0.21807,0.350528,0.382904,0.432408,0.190404,0.135865,0.488841,0.18137,0.180609,0.291283,0.273972,0.153023,0.400137,0.37958,0.22307,0.160699,0.391307,0.166736,0.181253,0.0422294,0.263877,0.146486,0.431348,0.262486,0.294204,0.00911376,0.288826,0.246621,0.463617,0.697373,0.0965376,0.377203,0.279263,0.336564,0.35463,0.581771,0.800557,0.0594155,0.587524,0.208795,0.0713793,0.212621,0.594469,0.1798,0.0791056,0.581874,0.355154,0.730614,0.251388,0.537088,0.603804,0.629445,0.306963,0.206759,0.526495,0.580285,0.550495,0.424482,0.820986,0.610475,0.00638184,0.561689,0.0269405,0.00125038,0.623136,0.708698,0.00950745,0.445257,0.349068,0.70429,0.798758,0.557035,0.427789,0.689998,0.386595,0.0700328,0.433702,0.258394,0.644878,0.432123,0.759415,0.661773,0.494975,0.0903515,0.0895484,0.259088,0.371758,0.71344,0.562417,0.183098,0.570752,0.254547,0.673352,0.821811,0.680843,0.500384,0.541378,0.47213,0.0243913,0.723387,0.898765,0.446908,0.315485,0.311289,0.0572024,0.4488,0.389888,0.603509,0.511254,0.553178,0.246387,0.224252,0.0603905,0.155054,0.466978,0.518234,0.257848,0.353942,0.192234,0.427276,0.00295893,0.466967,0.283682,0.424668,0.462212,0.474058,0.583101,0.702164,0.477016,0.263776,0.498956,0.00553884,0.55798,0.349033,0.0205893,0.723248,0.34194,0.592696,0.592314,0.27725,0.380115,0.763919,0.317485,0.633504,0.220564,0.845182,0.262394,0.307462,0.135076,0.469588,0.664443,0.274593,0.490712,0.541363,0.709432,0.583627,0.531474,0.720644,0.562305,0.0010781,0.361524,0.31558,0.412744,0.54408,0.62698,0.0367094,0.415367,1.14436e-05,0.45585,0.36864,0.538745,0.456862,0.453004,0.00116776,0.00964276,0.693441,0.382214,0.553161,0.639572,0.68995,0.339393,0.694478,0.306231,0.298354,0.646049,0.784543,0.457741,0.641611,0.426239,0.162155,0.289012,0.572661,0.412586,0.534679,0.41502,0.55475,0.66153,0.523749,0.499347,0.307426,0.206772,0.196912,0.490527,0.132075,0.44799,0.00173749,0.318338,0.276338,0.126433,0.417412,0.318174,0.0555558,0.295666,0.393022,0.293641,0.116969,0.401231,0.255983,0.297663,0.256708,0.338258,0.322052,0.145568,0.153833,0.261242,0.38389,0.54721,0.388459,0.321362,0.627637,0.280757,0.301366,0.340343,0.343265,0.0337506,0.462092,0.336254,0.308589,0.291523,0.19697,0.309816,0.0537285,0.15063,0.0210584,0.281455,0.348739,0.419895,0.138495,0.208834,0.0587417,0.377566,0.342366,0.109684,0.322704,0.403482,0.181288,0.230841,0.352328,0.255358,0.351665,0.265112,0.0633313,0.10772,0.0854747,0.0747609,0.406458,0.312881,0.0365105,0.244656,0.192188,0.158985,0.174153,0.0972854,0.333309,0.249919,0.339517,0.303699,0.198326,0.0144647,0.0244644,0.282501,0.252005,0.390891,0.238377,0.334983,0.197875,0.287909,0.289389,0.117618,0.392533,0.396962,0.316002,0.330317,0.0582923,0.225079,0.050521,0.379651,0.185715,0.345505,0.375521,0.271405,0.311201,0.221943,0.306427,0.367733,0.246925,0.208775,0.390438,0.343014,0.270094,0.276922,0.156279,0.313647,0.461742,0.10563,0.336468,0.13327,0.313545,0.17149,0.0877361,0.0880065,0.238969,0.126615,0.0669467,0.0879453,0.474066,0.396935,0.326779,0.292869,0.358198,0.29552,0.131776,0.158116,0.104606,0.194814,0.104167,0.168186,0.108081,0.123829,0.205215,0.175247,0.0724304,0.109077,0.144842,0.0604892,0.214671,0.316879,0.442567,0.430541,0.0354176,0.224871,0.398887,0.088016,0.310732,0.349611,0.445995,0.385709,0.278202,0.426488,0.400591,0.209809,0.253154,0.319519,0.309489,0.430805,0.0753413,0.480785,0.185476,0.336314,0.344469,0.184651,0.303359,0.297596,0.42392,0.425912,0.380826,0.259046,0.345068,0.151046,0.483953,0.347171,0.321735,0.15463,0.13907,0.470121,0.269432,0.250466,0.409882,0.115686,0.408975,0.162633,0.342661,0.27567,0.248127,0.33299,0.384731,0.319112,0.526476 | ||
|tfbs_overrepresentation_for_novel_motifs=0.508327,6.42689,0.500341,0.654974,0.454983,0.653236,0.733342,0.866061,0.321368,2.31449,0.621241,0.778743,1.37937,0.721271,0.453496,0.478935,0.963929,0.395009,1.42981,0.501863,0.500405,0.121147,1.55551,0.44943,0.549618,1.88178,0.25115,1.55072,0.458349,0.233785,0.598009,1.00172,0.94379,1.38854,1.0713,1.1597,1.06371,1.57519,0.388123,1.48009,0.415749,0.580638,0.132849,0.451846,1.74542,0.533483,0.734485,0.609718,0.124583,0.458489,0.817229,0.746838,1.06581,1.08035,1.2359,0.724351,0.4631,0.689906,0.233662,0.688844,1.04369,0.736968,0.321912,0.935408,2.98433,2.08177,1.32544,1.69665,0.991065,1.53343,3.48823,0.330474,3.97476,1.23387,6.86963,0.709554,0.240727,0.917983,0.987729,0.543014,0.293154,0.934302,0.755403,0.327263,1.18161,4.55602,0.963115,0.228496,0.844289,1.79645,1.41984,1.15413,1.01895,0.96134,0.455791,0.381528,0.780629,3.93669,0.849074,0.211081,0.389604,1.01316,1.05685,0.967698,0.88799,0.616433,0.951411,0.717647,3.41206,1.95251,0.512457,1.05402,1.23742,0.631235,1.37132,0.412056,4.84376,0.596731,0.897476,0.370186,1.22546,0.841768,0.650322,0.767198,1.48307,0.918767,0.72668,1.02407,1.2687,2.65061,1.15483,0.601055,1.28328,0.763715,1.43285,0.221105,0.591636,0.643339,1.38998,2.25246,1.84906,1.35224,0.728494,1.05895,0.889806,1.63047,0.87256,2.09294,1.41294,0.363423,0.526389,4.84969,1.15522,4.15863,0.736459,1.56426,0.827475,0.439798,0.54968,1.2893,1.35101,1.13636,0.98692,1.29666,0.906429,0.754576,0.35004,0.731946,0.443702 | |||
}} | }} | ||
Revision as of 15:00, 26 November 2012
Full id: C1624_parotid_submaxillary_Mast_chronic_mesenchymal_acute_non
Phase1 CAGE Peaks
| Hg19::chr11:17298255..17298296,+ | p2@NUCB2 |
| Hg19::chr11:17298297..17298341,+ | p1@NUCB2 |
| Hg19::chr11:17298342..17298353,+ | p4@NUCB2 |
| Hg19::chr11:17298522..17298531,+ | p5@NUCB2 |
| Hg19::chr11:17298543..17298588,+ | p3@NUCB2 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br><br>disease_data<br>
| Ontology term | p-value | n |
|---|---|---|
| leukemia | 1.81e-13 | 39 |
| myeloid leukemia | 5.02e-13 | 31 |
| organ system cancer | 8.82e-12 | 137 |
| hematologic cancer | 1.10e-10 | 51 |
| immune system cancer | 1.10e-10 | 51 |
| disease of cellular proliferation | 6.02e-07 | 239 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| CCNT2#905 | 5 | 6.33620157696263 | 9.78880505817628e-05 | 0.00138847346390177 |
| CHD2#1106 | 5 | 10.3440228341169 | 8.43981772346334e-06 | 0.000230022474744465 |
| E2F1#1869 | 5 | 4.90738921487932 | 0.000351281809925646 | 0.00352155125233486 |
| E2F6#1876 | 4 | 4.01372458535791 | 0.00663211823393388 | 0.0282865110562266 |
| EGR1#1958 | 5 | 4.98817909481014 | 0.000323739800059071 | 0.00330379724236558 |
| ELF1#1997 | 5 | 4.25809795880754 | 0.000714241693977684 | 0.00572484177109251 |
| FOS#2353 | 5 | 8.9979553088944 | 1.69470025615156e-05 | 0.000388653491550753 |
| GABPB1#2553 | 5 | 7.06768383618217 | 5.6685482528729e-05 | 0.000947834631735178 |
| GATA1#2623 | 5 | 13.5603081438004 | 2.17950082879909e-06 | 7.83292797862863e-05 |
| GATA2#2624 | 5 | 12.744931733554 | 2.9719152914525e-06 | 0.000101069313293392 |
| HMGN3#9324 | 5 | 8.17854772335059 | 2.73180911341838e-05 | 0.000581310945387738 |
| IRF3#3661 | 5 | 46.9819522114896 | 4.35776524686345e-09 | 3.54179489974452e-07 |
| MAFK#7975 | 5 | 27.1007331378299 | 6.83095404221442e-08 | 4.15019202568256e-06 |
| MXI1#4601 | 5 | 9.9615716287593 | 1.01894348670516e-05 | 0.00026644326191287 |
| NANOG#79923 | 5 | 29.2447784810127 | 4.66760911383881e-08 | 3.03726123514151e-06 |
| NFYA#4800 | 5 | 18.4255806998305 | 4.70418681889082e-07 | 2.2220740261336e-05 |
| NFYB#4801 | 5 | 16.7597932535365 | 7.55590255814554e-07 | 3.32265645166384e-05 |
| REST#5978 | 3 | 5.79001722967681 | 0.00946878869443394 | 0.0356865801471613 |
| SP1#6667 | 5 | 5.6983813781409 | 0.00016639184371255 | 0.00204012652799895 |
| SP2#6668 | 5 | 26.1535304938446 | 8.16125998835445e-08 | 4.87337811277159e-06 |
| SREBF1#6720 | 5 | 47.0058494404883 | 4.34669369311096e-09 | 3.538303527785e-07 |
| SRF#6722 | 4 | 11.0377426097342 | 0.000129925581484675 | 0.00170984095321043 |
| TAF1#6872 | 5 | 3.34304628574529 | 0.00239460009087031 | 0.0135125156089477 |
| TFAP2A#7020 | 3 | 9.91118062382697 | 0.00202154697751128 | 0.0117437059063467 |
| TFAP2C#7022 | 3 | 6.48553716591613 | 0.00685895151794 | 0.0290511005589316 |
| THAP1#55145 | 5 | 31.3691446028513 | 3.28679666061441e-08 | 2.20894309162103e-06 |
| TRIM28#10155 | 3 | 11.1543150271575 | 0.00143315927152925 | 0.00920074509215905 |
| ZBTB7A#51341 | 5 | 7.3519093078759 | 4.65425347594289e-05 | 0.000815032828259556 |
| ZNF263#10127 | 5 | 8.22184163701068 | 2.6606316672286e-05 | 0.000570465429467641 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
