FFCP PHASE1:Hg19::chr7:27153613..27153630,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 9: | Line 9: | ||
|ontology_enrichment_celltype=CL:0000076!2.47e-10!62;CL:0000077!1.28e-08!19;CL:0000066!1.86e-08!254;CL:0000222!5.37e-08!119 | |ontology_enrichment_celltype=CL:0000076!2.47e-10!62;CL:0000077!1.28e-08!19;CL:0000066!1.86e-08!254;CL:0000222!5.37e-08!119 | ||
|ontology_enrichment_celltype_v019=CL:0000650;5.90e-08;2!CL:1000500;5.90e-08;2!CL:1000618;5.90e-08;2!CL:1001318;5.90e-08;2!CL:0002173;5.90e-08;2 | |ontology_enrichment_celltype_v019=CL:0000650;5.90e-08;2!CL:1000500;5.90e-08;2!CL:1000618;5.90e-08;2!CL:1001318;5.90e-08;2!CL:0002173;5.90e-08;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000650,1.16e-07,2;CL:1000500,1.16e-07,2;CL:1000618,1.16e-07,2;CL:1001318,1.16e-07,2;CL:0002173,1.16e-07,2 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:0050687!1.09e-09!143;DOID:305!4.51e-09!106;DOID:1749!1.02e-08!14 | |ontology_enrichment_disease=DOID:0050687!1.09e-09!143;DOID:305!4.51e-09!106;DOID:1749!1.02e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:3908;4.88e-07;5 | |ontology_enrichment_disease_v019=DOID:3908;4.88e-07;5 | ||
|ontology_enrichment_disease_v019_2=DOID:3908,5.87e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0003104!2.88e-12!238;UBERON:0009142!2.88e-12!238;UBERON:0003914!2.80e-11!118;UBERON:0002100!3.22e-10!216;UBERON:0000464!1.31e-09!104;UBERON:0004921!1.80e-09!129;UBERON:0004185!1.80e-09!129;UBERON:0000466!3.94e-09!126;UBERON:0005177!6.00e-09!107;UBERON:0001007!1.06e-08!155;UBERON:0001555!1.06e-08!155;UBERON:0007026!1.06e-08!155;UBERON:0003886!1.37e-08!63;UBERON:0004111!2.59e-08!241;UBERON:0000077!3.81e-08!130;UBERON:0001981!4.45e-08!60;UBERON:0007500!4.45e-08!60;UBERON:0004537!4.45e-08!60;UBERON:0006965!4.45e-08!60;UBERON:0001637!5.22e-08!42;UBERON:0003509!5.22e-08!42;UBERON:0004572!5.22e-08!42;UBERON:0000481!5.60e-08!347;UBERON:0004872!1.02e-07!84;UBERON:0004119!1.35e-07!169;UBERON:0000925!1.35e-07!169;UBERON:0006595!1.35e-07!169;UBERON:0003064!2.59e-07!37;UBERON:0000055!4.16e-07!69;UBERON:0006554!4.21e-07!44;UBERON:0009569!4.22e-07!113;UBERON:0000926!5.13e-07!448;UBERON:0004120!5.13e-07!448;UBERON:0006603!5.13e-07!448;UBERON:0005153!5.62e-07!37;UBERON:0001008!8.63e-07!45;UBERON:0002553!8.70e-07!70 | |ontology_enrichment_uberon=UBERON:0003104!2.88e-12!238;UBERON:0009142!2.88e-12!238;UBERON:0003914!2.80e-11!118;UBERON:0002100!3.22e-10!216;UBERON:0000464!1.31e-09!104;UBERON:0004921!1.80e-09!129;UBERON:0004185!1.80e-09!129;UBERON:0000466!3.94e-09!126;UBERON:0005177!6.00e-09!107;UBERON:0001007!1.06e-08!155;UBERON:0001555!1.06e-08!155;UBERON:0007026!1.06e-08!155;UBERON:0003886!1.37e-08!63;UBERON:0004111!2.59e-08!241;UBERON:0000077!3.81e-08!130;UBERON:0001981!4.45e-08!60;UBERON:0007500!4.45e-08!60;UBERON:0004537!4.45e-08!60;UBERON:0006965!4.45e-08!60;UBERON:0001637!5.22e-08!42;UBERON:0003509!5.22e-08!42;UBERON:0004572!5.22e-08!42;UBERON:0000481!5.60e-08!347;UBERON:0004872!1.02e-07!84;UBERON:0004119!1.35e-07!169;UBERON:0000925!1.35e-07!169;UBERON:0006595!1.35e-07!169;UBERON:0003064!2.59e-07!37;UBERON:0000055!4.16e-07!69;UBERON:0006554!4.21e-07!44;UBERON:0009569!4.22e-07!113;UBERON:0000926!5.13e-07!448;UBERON:0004120!5.13e-07!448;UBERON:0006603!5.13e-07!448;UBERON:0005153!5.62e-07!37;UBERON:0001008!8.63e-07!45;UBERON:0002553!8.70e-07!70 | ||
|ontology_enrichment_uberon_v019=UBERON:0003567;5.90e-08;2!UBERON:0003838;5.90e-08;2!UBERON:0003586;5.90e-08;2!UBERON:0005169;5.90e-08;2!UBERON:0002321;5.90e-08;2!UBERON:0005215;5.90e-08;2!UBERON:0002303;5.90e-08;2!UBERON:0002319;5.90e-08;2 | |ontology_enrichment_uberon_v019=UBERON:0003567;5.90e-08;2!UBERON:0003838;5.90e-08;2!UBERON:0003586;5.90e-08;2!UBERON:0005169;5.90e-08;2!UBERON:0002321;5.90e-08;2!UBERON:0005215;5.90e-08;2!UBERON:0002303;5.90e-08;2!UBERON:0002319;5.90e-08;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003567,1.16e-07,2;UBERON:0003838,1.16e-07,2;UBERON:0003586,1.16e-07,2;UBERON:0005169,1.16e-07,2;UBERON:0002321,1.16e-07,2;UBERON:0005215,1.16e-07,2;UBERON:0002303,1.16e-07,2;UBERON:0002319,1.16e-07,2 | |||
|phase1_expression=0,0,0.422863212287913,1.0007329835313,0,0.872338524100369,0,0,0,0.737201809504527,0,0.218441372130172,0,0.123766352960047,0,1.34465029290355,0.602694528023977,1.46062018077475,0.487932798790507,0.492484232307152,0.816002764977012,2.82109249330279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0.275118041940067,0.417989933073621,0,0,0,0.402829317109147,0,0.24406205754817,0,0,0,0,0.112611480483322,1.53316637465883,0,0,0,0,0,0,0,0,0.573673241497627,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,0,0.23486899728753,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0.439001141634502,1.1240175325762,0,0,0,0,0,0,0,0,0.462985512576611,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387815147273333,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0.710783897485092,0,0.904318131178758,2.61460037580088,1.49959486773086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,1.00034104211935,0.542530047399471,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0.606255142892519,1.66435439510497,0,0,0,0,0,0,0.64341568457443,1.48418066444991,0,0.177561725313127,0.164254312027618,1.03850885836724,0.232420756919918,0,0.601519410909855,0.368323955743585,0.574072240823034,0,0.131124414959424,0,0.924184045252977,1.56869953835371,0,1.16106791782163,0,0.170093705276516,0.431831832204279,1.54227252690289,1.35473218771926,1.00337954770971,0.509752546090077,0,0.895499018888713,0,0,0,0,0,0,0,0,0,0,0,0.290012154876366,0,0,0,0,0.145016693914229,0.255679882248303,0,0,0,0,0,0,0.31481234683064,0,0.616067160352178,0,1.73986598415015,0.9266210955196,0.143124886741991,0,0,0,0,0,0,1.56989728039846,0,0,0.235624804691373,0,0,0,0,0.731140468893853,3.16950440270266,0,0.282810863907425,1.13008116620243,3.85955740482287,0.66343897524122,0,0,0,0.202910376962704,0.30982349809975,0,0.143411352204052,0,1.07001315444375,0,0,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,2.84136146806413,0.47748896947538,1.18785872333055,0.614321404198464,0,0,0,0,0,0.796991953004279,0,0,1.84083628503879,0,0,0.808815160325942,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0.568967241427498,0,0,0,0,0.347249989866585,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0.210998064528027,6.52931232636591,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0.391329237864179,0.971121518136371,0,0,0,0,0,0.311064574191741,0.664653872707185,0.661983911750998,0.313932918407225,0,3.41531455235751,0,0,0.391969589657511,0.870592065804026,0.34945333648406,1.0319161948297,0.0967563312890851,0.0730893170861856,0.0821154570532092,0.484945082442097,0,0,0,0,0,0,1.84365286578528,0.213452994739353,0.999048047910651,0.72045208577053,0.572682980829578,0.686379991447858,0.432164393964449,2.60930324687408,0,0,0,0.509991088181609,7.51271533743949,0,0,0,0,0,0,0.229160424011684,0,0,0,0.223171457441873,0,0,0,0,0,0,0.196854963029498,0,0,0,0,0,0,0,0,0,1.0063040627978,0.236417121897595,0.524545881349981,0,1.25501137532991,1.15149118391667,0,0,0.25426853765475,0,0,0,0,0,1.36310417428337,1.35974509824151,0.146552233678082,0,0,0,0.684347351537318,3.52407511158336,0.427149650270779,0.157204305099666,0,0,0,0,1.91502377331055,0,0,0,0,0,0,0,0,0,0,0.248385611765534,0,1.24980407962107,1.36484205787483,0.285465333544967,3.05845565607623,0,0,0.447764408660622,0.467426619694449,0,0,0,0,0.228840068396924,0.302461847526478,0.777186002913902,0.443565449968902,0.318593534327405,0,1.70789252563885,0.414706207840855,0,1.04349012362347,0.150257608997218,1.14241563650639,0.813741466409323,0,0.859284456339908,0,0,0,0,0,0,0.192619830407303,0.428883182749851,0.260994291965212,1.81364740409818,1.85217979459067,0.97894681802587,0.358177682162975,0,4.82424909073156,0.353378291891762,0.964570191354574,0.168942440653073,0.256241518587947,0,0,0,0,0,0,0,0.491545817507439,0.422624246717254,0,0,0,0.567515953566836,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0.294443155503077,0.589848616738702,0.733714394086716,1.84841065840541,0,0,0,0.0752103283492573,0,0,0,0.163771917510097,3.40068998299204,0,0,0,0,0,0,0,0,2.17196126987312,0,0,0,0,0,0,0,0.203909198930495,0,0.354581522651905,0.556157009460346,0.078493092850514,0,0,2.73947616152849,0.215927591218621,0,0,0,0.697448552208751,0.347716544605159,0.801711364730253,0,0,0,0,0,0.170426809518315,0,0.4582137370881,0,0,0.223710863595585,0,0,0,0.307988420568741,0,0,0,0,0.237840181555137,0.45178432815584,0,0.150962843566674,0.308696632431779,0.655678681511872,0,0.245148321753905,0,0,0,0,0,0.187967835959707,0.0644578879735772,0,0.535661815816973,0,0.882655033580851,0.730336388246517,0,0,0.946629373159108,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0.852935927603924,1.42838658878244,0.193766729508018,0.31037357147929,0,0.0636471582781649,0.202117188958219,0.870866991587845,1.02669990325584,0.336760265072938,0.143444410785353,0.99798106963804,3.98876016193775,0,0,0.808426818959282,0,0.122241444182866,0,0,0.402547587182052,0 | |phase1_expression=0,0,0.422863212287913,1.0007329835313,0,0.872338524100369,0,0,0,0.737201809504527,0,0.218441372130172,0,0.123766352960047,0,1.34465029290355,0.602694528023977,1.46062018077475,0.487932798790507,0.492484232307152,0.816002764977012,2.82109249330279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0.275118041940067,0.417989933073621,0,0,0,0.402829317109147,0,0.24406205754817,0,0,0,0,0.112611480483322,1.53316637465883,0,0,0,0,0,0,0,0,0.573673241497627,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,0,0.23486899728753,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0.439001141634502,1.1240175325762,0,0,0,0,0,0,0,0,0.462985512576611,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387815147273333,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0.710783897485092,0,0.904318131178758,2.61460037580088,1.49959486773086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,1.00034104211935,0.542530047399471,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0.606255142892519,1.66435439510497,0,0,0,0,0,0,0.64341568457443,1.48418066444991,0,0.177561725313127,0.164254312027618,1.03850885836724,0.232420756919918,0,0.601519410909855,0.368323955743585,0.574072240823034,0,0.131124414959424,0,0.924184045252977,1.56869953835371,0,1.16106791782163,0,0.170093705276516,0.431831832204279,1.54227252690289,1.35473218771926,1.00337954770971,0.509752546090077,0,0.895499018888713,0,0,0,0,0,0,0,0,0,0,0,0.290012154876366,0,0,0,0,0.145016693914229,0.255679882248303,0,0,0,0,0,0,0.31481234683064,0,0.616067160352178,0,1.73986598415015,0.9266210955196,0.143124886741991,0,0,0,0,0,0,1.56989728039846,0,0,0.235624804691373,0,0,0,0,0.731140468893853,3.16950440270266,0,0.282810863907425,1.13008116620243,3.85955740482287,0.66343897524122,0,0,0,0.202910376962704,0.30982349809975,0,0.143411352204052,0,1.07001315444375,0,0,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,2.84136146806413,0.47748896947538,1.18785872333055,0.614321404198464,0,0,0,0,0,0.796991953004279,0,0,1.84083628503879,0,0,0.808815160325942,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0.568967241427498,0,0,0,0,0.347249989866585,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0.210998064528027,6.52931232636591,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0.391329237864179,0.971121518136371,0,0,0,0,0,0.311064574191741,0.664653872707185,0.661983911750998,0.313932918407225,0,3.41531455235751,0,0,0.391969589657511,0.870592065804026,0.34945333648406,1.0319161948297,0.0967563312890851,0.0730893170861856,0.0821154570532092,0.484945082442097,0,0,0,0,0,0,1.84365286578528,0.213452994739353,0.999048047910651,0.72045208577053,0.572682980829578,0.686379991447858,0.432164393964449,2.60930324687408,0,0,0,0.509991088181609,7.51271533743949,0,0,0,0,0,0,0.229160424011684,0,0,0,0.223171457441873,0,0,0,0,0,0,0.196854963029498,0,0,0,0,0,0,0,0,0,1.0063040627978,0.236417121897595,0.524545881349981,0,1.25501137532991,1.15149118391667,0,0,0.25426853765475,0,0,0,0,0,1.36310417428337,1.35974509824151,0.146552233678082,0,0,0,0.684347351537318,3.52407511158336,0.427149650270779,0.157204305099666,0,0,0,0,1.91502377331055,0,0,0,0,0,0,0,0,0,0,0.248385611765534,0,1.24980407962107,1.36484205787483,0.285465333544967,3.05845565607623,0,0,0.447764408660622,0.467426619694449,0,0,0,0,0.228840068396924,0.302461847526478,0.777186002913902,0.443565449968902,0.318593534327405,0,1.70789252563885,0.414706207840855,0,1.04349012362347,0.150257608997218,1.14241563650639,0.813741466409323,0,0.859284456339908,0,0,0,0,0,0,0.192619830407303,0.428883182749851,0.260994291965212,1.81364740409818,1.85217979459067,0.97894681802587,0.358177682162975,0,4.82424909073156,0.353378291891762,0.964570191354574,0.168942440653073,0.256241518587947,0,0,0,0,0,0,0,0.491545817507439,0.422624246717254,0,0,0,0.567515953566836,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0.294443155503077,0.589848616738702,0.733714394086716,1.84841065840541,0,0,0,0.0752103283492573,0,0,0,0.163771917510097,3.40068998299204,0,0,0,0,0,0,0,0,2.17196126987312,0,0,0,0,0,0,0,0.203909198930495,0,0.354581522651905,0.556157009460346,0.078493092850514,0,0,2.73947616152849,0.215927591218621,0,0,0,0.697448552208751,0.347716544605159,0.801711364730253,0,0,0,0,0,0.170426809518315,0,0.4582137370881,0,0,0.223710863595585,0,0,0,0.307988420568741,0,0,0,0,0.237840181555137,0.45178432815584,0,0.150962843566674,0.308696632431779,0.655678681511872,0,0.245148321753905,0,0,0,0,0,0.187967835959707,0.0644578879735772,0,0.535661815816973,0,0.882655033580851,0.730336388246517,0,0,0.946629373159108,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0.852935927603924,1.42838658878244,0.193766729508018,0.31037357147929,0,0.0636471582781649,0.202117188958219,0.870866991587845,1.02669990325584,0.336760265072938,0.143444410785353,0.99798106963804,3.98876016193775,0,0,0.808426818959282,0,0.122241444182866,0,0,0.402547587182052,0 | ||
|short_description=p6@HOXA3 | |short_description=p6@HOXA3 | ||
}} | }} |
Revision as of 01:17, 20 November 2012
Short description: | p6@HOXA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_HOXA3_5end |
Coexpression cluster: | C2890_Smooth_glioma_clear_Renal_endometrial_mesothelioma_gastric |
Association with transcript: | 0bp_to_ENST00000396350, uc011jzk.1_5end |
EntrezGene: | HOXA3 |
HGNC: | 5104 |
UniProt: | A4D182 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesangial cell | 1.16e-07 | 2 |
kidney interstitial cell | 1.16e-07 | 2 |
juxtaglomerular complex cell | 1.16e-07 | 2 |
renal interstitial pericyte | 1.16e-07 | 2 |
extraglomerular mesangial cell | 1.16e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
abdomen connective tissue | 1.16e-07 | 2 |
abdominal segment connective tissue | 1.16e-07 | 2 |
trunk connective tissue | 1.16e-07 | 2 |
interstitial tissue | 1.16e-07 | 2 |
extraglomerular mesangium | 1.16e-07 | 2 |
kidney interstitium | 1.16e-07 | 2 |
juxtaglomerular apparatus | 1.16e-07 | 2 |
mesangium | 1.16e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
non-small cell lung carcinoma | 5.87e-07 | 5 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.