FFCP PHASE1:Hg19::chr1:161015706..161015747,-: Difference between revisions
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|ontology_enrichment_celltype=CL:0000738!1.48e-16!140;CL:0000037!6.67e-14!172;CL:0000566!6.67e-14!172;CL:0000988!7.94e-14!182;CL:0002087!1.68e-12!119;CL:0002032!3.33e-12!165;CL:0000837!3.33e-12!165;CL:0002031!7.27e-12!124;CL:0000236!5.26e-08!14;CL:0000542!8.51e-08!53;CL:0000051!8.51e-08!53;CL:0000838!1.36e-07!52;CL:0000766!3.99e-07!76 | |ontology_enrichment_celltype=CL:0000738!1.48e-16!140;CL:0000037!6.67e-14!172;CL:0000566!6.67e-14!172;CL:0000988!7.94e-14!182;CL:0002087!1.68e-12!119;CL:0002032!3.33e-12!165;CL:0000837!3.33e-12!165;CL:0002031!7.27e-12!124;CL:0000236!5.26e-08!14;CL:0000542!8.51e-08!53;CL:0000051!8.51e-08!53;CL:0000838!1.36e-07!52;CL:0000766!3.99e-07!76 | ||
|ontology_enrichment_celltype_v019=CL:0000236;4.59e-09;13 | |ontology_enrichment_celltype_v019=CL:0000236;4.59e-09;13 | ||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.31e-17,136;CL:0000037,1.68e-14,168;CL:0000988,3.26e-14,177;CL:0002087,3.10e-13,115;CL:0002032,9.20e-13,161;CL:0000837,9.20e-13,161;CL:0002031,1.52e-12,120;CL:0000236,5.26e-08,14;CL:0000542,8.51e-08,53;CL:0000051,8.51e-08,53;CL:0000766,8.93e-08,72;CL:0000838,1.36e-07,52 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0000073;4.41e-10;53!UBERON:0002616;4.41e-10;53!UBERON:0002619;8.75e-10;22!UBERON:0001893;2.09e-09;34!UBERON:0001869;2.65e-09;32!UBERON:0002791;2.84e-09;32!UBERON:0003528;3.37e-09;34!UBERON:0002020;3.37e-09;34!UBERON:0001950;4.46e-09;20!UBERON:0002780;4.69e-09;41!UBERON:0001890;4.69e-09;41!UBERON:0000956;1.07e-08;25!UBERON:0000203;1.07e-08;25!UBERON:0000955;3.62e-07;68 | |ontology_enrichment_uberon_v019=UBERON:0000073;4.41e-10;53!UBERON:0002616;4.41e-10;53!UBERON:0002619;8.75e-10;22!UBERON:0001893;2.09e-09;34!UBERON:0001869;2.65e-09;32!UBERON:0002791;2.84e-09;32!UBERON:0003528;3.37e-09;34!UBERON:0002020;3.37e-09;34!UBERON:0001950;4.46e-09;20!UBERON:0002780;4.69e-09;41!UBERON:0001890;4.69e-09;41!UBERON:0000956;1.07e-08;25!UBERON:0000203;1.07e-08;25!UBERON:0000955;3.62e-07;68 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,8.24e-17,56;UBERON:0005068,8.24e-17,56;UBERON:0006241,8.24e-17,56;UBERON:0007135,8.24e-17,56;UBERON:0000073,1.92e-16,53;UBERON:0002616,1.92e-16,53;UBERON:0001017,3.09e-15,81;UBERON:0002346,4.10e-14,86;UBERON:0000955,7.78e-14,68;UBERON:0006238,7.78e-14,68;UBERON:0007023,1.40e-13,114;UBERON:0003075,1.95e-13,82;UBERON:0007284,1.95e-13,82;UBERON:0001016,4.30e-13,89;UBERON:0002780,1.05e-12,41;UBERON:0001890,1.05e-12,41;UBERON:0003080,1.05e-12,41;UBERON:0006240,1.05e-12,41;UBERON:0001893,4.72e-11,34;UBERON:0003056,8.06e-11,61;UBERON:0003528,9.53e-11,34;UBERON:0002020,9.53e-11,34;UBERON:0001869,1.38e-10,32;UBERON:0002791,1.60e-10,32;UBERON:0002619,9.92e-10,22;UBERON:0001950,5.12e-09,20;UBERON:0000956,8.86e-09,25;UBERON:0000203,8.86e-09,25;UBERON:0010371,1.62e-08,104 | |||
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| ||
|short_description=p1@USF1 | |short_description=p1@USF1 | ||
}} | }} |
Revision as of 20:40, 17 November 2012
Short description: | p1@USF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_USF1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000529476_5end |
EntrezGene: | USF1 |
HGNC: | 12593 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.31e-17 | 136 |
hematopoietic stem cell | 1.68e-14 | 168 |
hematopoietic cell | 3.26e-14 | 177 |
nongranular leukocyte | 3.10e-13 | 115 |
hematopoietic oligopotent progenitor cell | 9.20e-13 | 161 |
hematopoietic multipotent progenitor cell | 9.20e-13 | 161 |
hematopoietic lineage restricted progenitor cell | 1.52e-12 | 120 |
B cell | 5.26e-08 | 14 |
lymphocyte | 8.51e-08 | 53 |
common lymphoid progenitor | 8.51e-08 | 53 |
myeloid leukocyte | 8.93e-08 | 72 |
lymphoid lineage restricted progenitor cell | 1.36e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
neural tube | 8.24e-17 | 56 |
neural rod | 8.24e-17 | 56 |
future spinal cord | 8.24e-17 | 56 |
neural keel | 8.24e-17 | 56 |
regional part of nervous system | 1.92e-16 | 53 |
regional part of brain | 1.92e-16 | 53 |
central nervous system | 3.09e-15 | 81 |
neurectoderm | 4.10e-14 | 86 |
brain | 7.78e-14 | 68 |
future brain | 7.78e-14 | 68 |
adult organism | 1.40e-13 | 114 |
neural plate | 1.95e-13 | 82 |
presumptive neural plate | 1.95e-13 | 82 |
nervous system | 4.30e-13 | 89 |
regional part of forebrain | 1.05e-12 | 41 |
forebrain | 1.05e-12 | 41 |
anterior neural tube | 1.05e-12 | 41 |
future forebrain | 1.05e-12 | 41 |
telencephalon | 4.72e-11 | 34 |
pre-chordal neural plate | 8.06e-11 | 61 |
brain grey matter | 9.53e-11 | 34 |
gray matter | 9.53e-11 | 34 |
cerebral hemisphere | 1.38e-10 | 32 |
regional part of telencephalon | 1.60e-10 | 32 |
regional part of cerebral cortex | 9.92e-10 | 22 |
neocortex | 5.12e-09 | 20 |
cerebral cortex | 8.86e-09 | 25 |
pallium | 8.86e-09 | 25 |
ecto-epithelium | 1.62e-08 | 104 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.