FFCP PHASE1:Mm9::chr13:98010402..98010420,+: Difference between revisions
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|id=chr13:98010402..98010420,+ | |id=chr13:98010402..98010420,+ | ||
|ontology_enrichment_celltype=CL:0000117!2.02e-12!23;CL:0000337!2.02e-12!23;CL:0000540!4.33e-10!33;CL:0000047!4.33e-10!33;CL:0000031!4.33e-10!33;CL:0000404!4.33e-10!33;CL:0002319!1.04e-08!43;CL:0000221!2.43e-08!44;CL:0000133!2.43e-08!44;CL:0002609!4.45e-08!6;CL:0000393!1.67e-07!39;CL:0000211!1.67e-07!39 | |ontology_enrichment_celltype=CL:0000117!2.02e-12!23;CL:0000337!2.02e-12!23;CL:0000540!4.33e-10!33;CL:0000047!4.33e-10!33;CL:0000031!4.33e-10!33;CL:0000404!4.33e-10!33;CL:0002319!1.04e-08!43;CL:0000221!2.43e-08!44;CL:0000133!2.43e-08!44;CL:0002609!4.45e-08!6;CL:0000393!1.67e-07!39;CL:0000211!1.67e-07!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0002609,2.03e-29,6;CL:0000117,3.94e-17,23;CL:0000337,3.94e-17,23;CL:0000120,2.04e-15,3;CL:0000540,5.59e-12,33;CL:0000047,5.59e-12,33;CL:0000031,5.59e-12,33;CL:0000404,5.59e-12,33;CL:0000393,3.80e-10,39;CL:0000211,3.80e-10,39;CL:0002319,3.32e-09,43;CL:0000221,5.36e-09,44;CL:0000133,5.36e-09,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!7.15e-13!34;UBERON:0001017!4.90e-12!73;UBERON:0005743!4.90e-12!73;UBERON:0000073!2.19e-11!75;UBERON:0001016!2.19e-11!75;UBERON:0002791!8.84e-11!29;UBERON:0003528!8.84e-11!29;UBERON:0001893!8.84e-11!29;UBERON:0001049!8.72e-10!52;UBERON:0005068!8.72e-10!52;UBERON:0006241!8.72e-10!52;UBERON:0007135!8.72e-10!52;UBERON:0003056!3.70e-09!49;UBERON:0004121!6.47e-09!102;UBERON:0000924!6.47e-09!102;UBERON:0006601!6.47e-09!102;UBERON:0003080!1.02e-08!40;UBERON:0000956!1.36e-08!21;UBERON:0001869!1.36e-08!21;UBERON:0000203!1.36e-08!21;UBERON:0002346!3.23e-08!71;UBERON:0003075!3.23e-08!71;UBERON:0007284!3.23e-08!71;UBERON:0002780!3.64e-08!39;UBERON:0001890!3.64e-08!39;UBERON:0006240!3.64e-08!39;UBERON:0002616!6.95e-08!49;UBERON:0000955!1.42e-07!50;UBERON:0006238!1.42e-07!50;UBERON:0000033!4.15e-07!63 | |ontology_enrichment_uberon=UBERON:0002020!7.15e-13!34;UBERON:0001017!4.90e-12!73;UBERON:0005743!4.90e-12!73;UBERON:0000073!2.19e-11!75;UBERON:0001016!2.19e-11!75;UBERON:0002791!8.84e-11!29;UBERON:0003528!8.84e-11!29;UBERON:0001893!8.84e-11!29;UBERON:0001049!8.72e-10!52;UBERON:0005068!8.72e-10!52;UBERON:0006241!8.72e-10!52;UBERON:0007135!8.72e-10!52;UBERON:0003056!3.70e-09!49;UBERON:0004121!6.47e-09!102;UBERON:0000924!6.47e-09!102;UBERON:0006601!6.47e-09!102;UBERON:0003080!1.02e-08!40;UBERON:0000956!1.36e-08!21;UBERON:0001869!1.36e-08!21;UBERON:0000203!1.36e-08!21;UBERON:0002346!3.23e-08!71;UBERON:0003075!3.23e-08!71;UBERON:0007284!3.23e-08!71;UBERON:0002780!3.64e-08!39;UBERON:0001890!3.64e-08!39;UBERON:0006240!3.64e-08!39;UBERON:0002616!6.95e-08!49;UBERON:0000955!1.42e-07!50;UBERON:0006238!1.42e-07!50;UBERON:0000033!4.15e-07!63 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003528,9.92e-14,29;UBERON:0002791,9.92e-14,29;UBERON:0001893,9.92e-14,29;UBERON:0000956,3.11e-13,21;UBERON:0001869,3.11e-13,21;UBERON:0000203,3.11e-13,21;UBERON:0002020,1.00e-11,34;UBERON:0002780,3.13e-10,39;UBERON:0001890,3.13e-10,39;UBERON:0006240,3.13e-10,39;UBERON:0003080,5.63e-10,40;UBERON:0001017,1.46e-09,73;UBERON:0001016,2.65e-09,75;UBERON:0002616,1.12e-08,46;UBERON:0000955,1.71e-08,47;UBERON:0006238,1.71e-08,47;UBERON:0003056,3.81e-08,49;UBERON:0001049,1.13e-07,52;UBERON:0005068,1.13e-07,52;UBERON:0006241,1.13e-07,52;UBERON:0007135,1.13e-07,52;UBERON:0000073,2.17e-07,54;UBERON:0004121,2.60e-07,95;UBERON:0000924,2.60e-07,95;UBERON:0006601,2.60e-07,95;UBERON:0001954,2.84e-07,7;UBERON:0003022,2.84e-07,7;UBERON:0002421,2.84e-07,7;UBERON:0000349,2.84e-07,7;UBERON:0002600,2.84e-07,7 | |||
|phase1_expression=0,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0.342401459862411,0.262261207256992,0,0,0,0,0,0,0.255129870453209,0.0992909512008853,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0,0,0,0,0,0,0,0,0.809265843438391,1.05798195854407,2.53532561402472,0,0,0,0,0,0.299600110518405,0.384218305321555,2.28117147078651,1.35005938331691,1.26194976810829,0,0.441737081903227,0.979926393719632,0.670918297127655,4.5960939330501,0,0.255374676170375,0.153606533256243,0.791317726381163,0.640413505216868,0,0,0,0.30559649555362,0.589257170947335,0.284743361598206,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220841518460394,0,0,0,0.209446706813455,0,0.11981512450592,0,0.127070227073065,0.299581278809645,0.457500602818626,6.91098936620754,0.695297280769106,0.767146371990992,0,0.811206315338788,0.203678727700633,0,0,0,0.130120442962704,0,0.180062129805349,0.150704817835715,0.0680364991513279,0,0,0.258703370739016,0,0,0.175951124163949,0.43839146485515,0,0,0,0,0,0,0.284163499395593,0,0,0,0,0,0.154267112887378,0,0,0,0,0,0,0.146199987425332,0,0,1.47202963994889,0.92614151141356,0,0,0.213288250535234,0.232236671860439,0,0,0.22237804384487,0,0,0,0,0,0,0,0,0,0.189667900953082,0,0,0.203651327845314,0,0.0701358198903186,0,0,0,0,0,0,0,0.224862112384854,0,0,0,0,0.162135226775035,0,0,0.372140947668503,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0,0,0.172684981865896,0,0,0,0,0,0,0,0,0,0.315508219416257,0,0,0,0,0.283076530788832,0,0,0.790575555893047,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0,0,0,0,0,0,0,0,0,0.16488625294148,0.322928853391811,0,0,0,0,0.370850604021019,0,0,0,0,0,0,0.339956859987711,0,0,0,0,0,0.108005340821801,0,0,0,0.0826534557253359,0,0,0,0.56369293868419,0.299033092087958,0,0,0,0.506868376472335,0,0.39061315453185,0.629156066554265,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515559547031063,0,0,0,0.900642406448441,0.453142408984205,0.51776031175182,0,0.399024873401031,0.512200817262403,0,0,0.735374033800057,0,0,0.320919209591815,0,0.25347929989024,0.377252682772152,0.280924522409647,0.256100609619477,0.0574354689556133,0,0.347652977834566,0.192909220463705,0,0,0,0,0.476872379894642,0,0,0,0,0,0.271608227691724,0,0.118635018124174,0.197008964751127,0,0.309873682371932,0.192906610981141,0,0,0,0.191288332068843,0,0 | |phase1_expression=0,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0.342401459862411,0.262261207256992,0,0,0,0,0,0,0.255129870453209,0.0992909512008853,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0,0,0,0,0,0,0,0,0.809265843438391,1.05798195854407,2.53532561402472,0,0,0,0,0,0.299600110518405,0.384218305321555,2.28117147078651,1.35005938331691,1.26194976810829,0,0.441737081903227,0.979926393719632,0.670918297127655,4.5960939330501,0,0.255374676170375,0.153606533256243,0.791317726381163,0.640413505216868,0,0,0,0.30559649555362,0.589257170947335,0.284743361598206,0.186399445825301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220841518460394,0,0,0,0.209446706813455,0,0.11981512450592,0,0.127070227073065,0.299581278809645,0.457500602818626,6.91098936620754,0.695297280769106,0.767146371990992,0,0.811206315338788,0.203678727700633,0,0,0,0.130120442962704,0,0.180062129805349,0.150704817835715,0.0680364991513279,0,0,0.258703370739016,0,0,0.175951124163949,0.43839146485515,0,0,0,0,0,0,0.284163499395593,0,0,0,0,0,0.154267112887378,0,0,0,0,0,0,0.146199987425332,0,0,1.47202963994889,0.92614151141356,0,0,0.213288250535234,0.232236671860439,0,0,0.22237804384487,0,0,0,0,0,0,0,0,0,0.189667900953082,0,0,0.203651327845314,0,0.0701358198903186,0,0,0,0,0,0,0,0.224862112384854,0,0,0,0,0.162135226775035,0,0,0.372140947668503,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0,0,0.172684981865896,0,0,0,0,0,0,0,0,0,0.315508219416257,0,0,0,0,0.283076530788832,0,0,0.790575555893047,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0,0,0,0,0,0,0,0,0,0.16488625294148,0.322928853391811,0,0,0,0,0.370850604021019,0,0,0,0,0,0,0.339956859987711,0,0,0,0,0,0.108005340821801,0,0,0,0.0826534557253359,0,0,0,0.56369293868419,0.299033092087958,0,0,0,0.506868376472335,0,0.39061315453185,0.629156066554265,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515559547031063,0,0,0,0.900642406448441,0.453142408984205,0.51776031175182,0,0.399024873401031,0.512200817262403,0,0,0.735374033800057,0,0,0.320919209591815,0,0.25347929989024,0.377252682772152,0.280924522409647,0.256100609619477,0.0574354689556133,0,0.347652977834566,0.192909220463705,0,0,0,0,0.476872379894642,0,0,0,0,0,0.271608227691724,0,0.118635018124174,0.197008964751127,0,0.309873682371932,0.192906610981141,0,0,0,0.191288332068843,0,0 | ||
|short_description=p@chr13:98010402..98010420,+ | |short_description=p@chr13:98010402..98010420,+ | ||
}} | }} |
Revision as of 06:05, 15 November 2012
Short description: | p@chr13:98010402..98010420, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr13:98010402..98010420, + |
Coexpression cluster: | MCL_coexpression_mm9:334 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of cerebral cortex | 2.03e-29 | 6 |
CNS neuron (sensu Vertebrata) | 3.94e-17 | 23 |
neuroblast (sensu Vertebrata) | 3.94e-17 | 23 |
granule cell | 2.04e-15 | 3 |
neuron | 5.59e-12 | 33 |
neuronal stem cell | 5.59e-12 | 33 |
neuroblast | 5.59e-12 | 33 |
electrically signaling cell | 5.59e-12 | 33 |
electrically responsive cell | 3.80e-10 | 39 |
electrically active cell | 3.80e-10 | 39 |
neural cell | 3.32e-09 | 43 |
ectodermal cell | 5.36e-09 | 44 |
neurectodermal cell | 5.36e-09 | 44 |
Ontology term | p-value | n |
---|---|---|
brain grey matter | 9.92e-14 | 29 |
regional part of telencephalon | 9.92e-14 | 29 |
telencephalon | 9.92e-14 | 29 |
cerebral cortex | 3.11e-13 | 21 |
cerebral hemisphere | 3.11e-13 | 21 |
pallium | 3.11e-13 | 21 |
gray matter | 1.00e-11 | 34 |
regional part of forebrain | 3.13e-10 | 39 |
forebrain | 3.13e-10 | 39 |
future forebrain | 3.13e-10 | 39 |
anterior neural tube | 5.63e-10 | 40 |
central nervous system | 1.46e-09 | 73 |
nervous system | 2.65e-09 | 75 |
regional part of brain | 1.12e-08 | 46 |
brain | 1.71e-08 | 47 |
future brain | 1.71e-08 | 47 |
pre-chordal neural plate | 3.81e-08 | 49 |
neural tube | 1.13e-07 | 52 |
neural rod | 1.13e-07 | 52 |
future spinal cord | 1.13e-07 | 52 |
neural keel | 1.13e-07 | 52 |
regional part of nervous system | 2.17e-07 | 54 |
ectoderm-derived structure | 2.60e-07 | 95 |
ectoderm | 2.60e-07 | 95 |
presumptive ectoderm | 2.60e-07 | 95 |
Ammon's horn | 2.84e-07 | 7 |
lobe parts of cerebral cortex | 2.84e-07 | 7 |
hippocampal formation | 2.84e-07 | 7 |
limbic system | 2.84e-07 | 7 |
limbic lobe | 2.84e-07 | 7 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.