FFCP PHASE1:Mm9::chr6:124691002..124691111,-: Difference between revisions
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|id=chr6:124691002..124691111,- | |id=chr6:124691002..124691111,- | ||
|ontology_enrichment_celltype=CL:0000221!6.22e-18!44;CL:0000133!6.22e-18!44;CL:0000144!2.16e-17!121;CL:0000012!2.16e-17!121;CL:0002319!2.25e-17!43;CL:0000723!2.68e-17!91;CL:0000048!2.68e-17!91;CL:0000055!5.14e-17!50;CL:0002371!6.24e-17!118;CL:0002321!6.57e-16!70;CL:0000220!6.57e-16!70;CL:0000548!9.75e-16!115;CL:0000004!9.75e-16!115;CL:0000255!9.75e-16!115;CL:0000034!2.05e-15!97;CL:0000540!2.34e-14!33;CL:0000047!2.34e-14!33;CL:0000031!2.34e-14!33;CL:0000404!2.34e-14!33;CL:0000393!2.73e-13!39;CL:0000211!2.73e-13!39;CL:0000117!1.21e-12!23;CL:0000337!1.21e-12!23;CL:0002453!9.63e-07!8 | |ontology_enrichment_celltype=CL:0000221!6.22e-18!44;CL:0000133!6.22e-18!44;CL:0000144!2.16e-17!121;CL:0000012!2.16e-17!121;CL:0002319!2.25e-17!43;CL:0000723!2.68e-17!91;CL:0000048!2.68e-17!91;CL:0000055!5.14e-17!50;CL:0002371!6.24e-17!118;CL:0002321!6.57e-16!70;CL:0000220!6.57e-16!70;CL:0000548!9.75e-16!115;CL:0000004!9.75e-16!115;CL:0000255!9.75e-16!115;CL:0000034!2.05e-15!97;CL:0000540!2.34e-14!33;CL:0000047!2.34e-14!33;CL:0000031!2.34e-14!33;CL:0000404!2.34e-14!33;CL:0000393!2.73e-13!39;CL:0000211!2.73e-13!39;CL:0000117!1.21e-12!23;CL:0000337!1.21e-12!23;CL:0002453!9.63e-07!8 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,6.22e-18,44;CL:0000133,6.22e-18,44;CL:0002319,2.25e-17,43;CL:0000723,2.68e-17,91;CL:0000048,2.68e-17,91;CL:0002321,6.57e-16,70;CL:0000034,2.05e-15,97;CL:0000540,2.34e-14,33;CL:0000047,2.34e-14,33;CL:0000031,2.34e-14,33;CL:0000404,2.34e-14,33;CL:0000393,2.73e-13,39;CL:0000211,2.73e-13,39;CL:0000117,1.21e-12,23;CL:0000337,1.21e-12,23;CL:0002453,9.63e-07,8 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.21e-23!73;UBERON:0005743!3.21e-23!73;UBERON:0000073!2.95e-21!75;UBERON:0001016!2.95e-21!75;UBERON:0001049!4.19e-15!52;UBERON:0005068!4.19e-15!52;UBERON:0006241!4.19e-15!52;UBERON:0007135!4.19e-15!52;UBERON:0002020!9.54e-15!34;UBERON:0002616!2.20e-14!49;UBERON:0000955!2.91e-14!50;UBERON:0006238!2.91e-14!50;UBERON:0002780!5.09e-14!39;UBERON:0001890!5.09e-14!39;UBERON:0006240!5.09e-14!39;UBERON:0003080!8.23e-14!40;UBERON:0002346!1.96e-13!71;UBERON:0003075!1.96e-13!71;UBERON:0007284!1.96e-13!71;UBERON:0004121!4.17e-13!102;UBERON:0000924!4.17e-13!102;UBERON:0006601!4.17e-13!102;UBERON:0000033!1.38e-12!63;UBERON:0002791!2.96e-12!29;UBERON:0003528!2.96e-12!29;UBERON:0001893!2.96e-12!29;UBERON:0003056!1.56e-11!49;UBERON:0000956!5.86e-09!21;UBERON:0001869!5.86e-09!21;UBERON:0000203!5.86e-09!21;UBERON:0007811!3.83e-08!86;UBERON:0002619!1.31e-07!17;UBERON:0000025!1.52e-07!114;UBERON:0000153!4.90e-07!94;UBERON:0004111!5.14e-07!122 | |ontology_enrichment_uberon=UBERON:0001017!3.21e-23!73;UBERON:0005743!3.21e-23!73;UBERON:0000073!2.95e-21!75;UBERON:0001016!2.95e-21!75;UBERON:0001049!4.19e-15!52;UBERON:0005068!4.19e-15!52;UBERON:0006241!4.19e-15!52;UBERON:0007135!4.19e-15!52;UBERON:0002020!9.54e-15!34;UBERON:0002616!2.20e-14!49;UBERON:0000955!2.91e-14!50;UBERON:0006238!2.91e-14!50;UBERON:0002780!5.09e-14!39;UBERON:0001890!5.09e-14!39;UBERON:0006240!5.09e-14!39;UBERON:0003080!8.23e-14!40;UBERON:0002346!1.96e-13!71;UBERON:0003075!1.96e-13!71;UBERON:0007284!1.96e-13!71;UBERON:0004121!4.17e-13!102;UBERON:0000924!4.17e-13!102;UBERON:0006601!4.17e-13!102;UBERON:0000033!1.38e-12!63;UBERON:0002791!2.96e-12!29;UBERON:0003528!2.96e-12!29;UBERON:0001893!2.96e-12!29;UBERON:0003056!1.56e-11!49;UBERON:0000956!5.86e-09!21;UBERON:0001869!5.86e-09!21;UBERON:0000203!5.86e-09!21;UBERON:0007811!3.83e-08!86;UBERON:0002619!1.31e-07!17;UBERON:0000025!1.52e-07!114;UBERON:0000153!4.90e-07!94;UBERON:0004111!5.14e-07!122 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.21e-23,73;UBERON:0001016,2.95e-21,75;UBERON:0000073,6.67e-17,54;UBERON:0010314,1.61e-15,92;UBERON:0001049,4.19e-15,52;UBERON:0005068,4.19e-15,52;UBERON:0006241,4.19e-15,52;UBERON:0007135,4.19e-15,52;UBERON:0002020,9.54e-15,34;UBERON:0002780,5.09e-14,39;UBERON:0001890,5.09e-14,39;UBERON:0006240,5.09e-14,39;UBERON:0002346,5.35e-14,64;UBERON:0003075,5.35e-14,64;UBERON:0007284,5.35e-14,64;UBERON:0003080,8.23e-14,40;UBERON:0002616,2.49e-13,46;UBERON:0004121,2.73e-13,95;UBERON:0000924,2.73e-13,95;UBERON:0006601,2.73e-13,95;UBERON:0000955,3.28e-13,47;UBERON:0006238,3.28e-13,47;UBERON:0003528,2.96e-12,29;UBERON:0002791,2.96e-12,29;UBERON:0001893,2.96e-12,29;UBERON:0003056,1.56e-11,49;UBERON:0010371,3.34e-10,73;UBERON:0000956,5.86e-09,21;UBERON:0001869,5.86e-09,21;UBERON:0000203,5.86e-09,21;UBERON:0002619,1.31e-07,17;UBERON:0000025,1.52e-07,114;UBERON:0004111,5.14e-07,122 | |||
|phase1_expression=209.314543165966,66.654302859118,78.7148684143897,38.7154190472742,33.5600139064053,70.8450527468175,46.4889154785096,119.955567477224,40.6879407018317,43.5360018958908,23.7992975833452,22.9743817906569,170.34472628155,176.326951679118,31.9785371343036,28.9539632367451,19.5877325875881,112.619993032891,94.6089591879598,131.560792057389,79.9406927420056,107.730682052961,98.4723205053786,47.8377344152286,64.2345986988076,86.134794617253,90.0292571972466,71.5364492517152,56.436955578543,77.6252799660587,57.4282022597239,15.2407361630311,13.5314253268605,0,78.2787889525954,90.4316470750198,83.505266711309,116.770324975597,109.386948233332,123.551603577816,147.057872007754,147.537824751024,163.616988971499,61.1858535361306,62.1440588375624,52.6779178704026,347.381756890529,290.191483142374,204.967208491262,231.371579898397,171.483366491069,267.379769718847,89.2603464227157,86.31809489935,72.2601668156298,72.0326420900652,88.8253663810146,125.308318423418,173.789839878395,183.559869807395,225.010148244694,171.79417775905,169.855306057228,226.324778896272,247.216590641744,246.536599886297,249.267291951313,344.643819873434,139.462528554902,159.982036923053,152.906246902455,172.247543595494,201.21124080692,118.081130443216,124.790803265744,189.359070041664,134.341374819254,103.426743849002,99.9978531498145,171.715946624712,186.451817661711,168.255018689833,152.713100453755,248.741073634003,166.855686572277,138.475435172624,116.460034893666,140.358782706451,24.9139176066176,38.9949250151013,96.5248747376587,175.526470904203,80.9165887112223,152.196300041864,102.664673956732,93.1895925162458,62.7786557988931,65.4452438699742,96.3806077076643,84.4481583079713,161.969932743183,71.862827352018,50.9610479413291,99.5493384414664,87.4623805685305,90.9561917055604,89.9833512126314,69.1954311097503,45.314129638255,49.8765587257811,79.4562796588902,79.1610243611567,74.950036608219,100.532001248599,51.2686763111673,81.4319511816297,21.7531571606249,38.7526276545363,38.9228642857945,47.2359201846435,39.0889487674897,36.8505192382769,35.4144346314432,45.0882427397783,50.2672096352292,42.4058711646262,153.483174492084,145.776363631398,125.799524802334,68.1547409291943,65.8800868058822,99.6439012255015,82.7403764115236,83.3632390896878,83.7385819575027,73.3330509066265,61.9183332209923,52.2509276562391,146.579199891531,34.7229062212682,90.4337078590791,116.560366947771,74.3656596096092,85.4496317128504,50.2789728728313,58.8041976107461,63.9982778742948,41.9099460597205,76.526637491159,56.7318240503458,60.3512355882345,79.7872466036372,68.1215760602715,38.6559904839605,52.4744447840256,93.5461054046918,107.438617658925,81.8366344624794,70.472547850107,51.988568906411,79.2698082736105,86.4297895012871,56.1085023336948,84.805383883131,93.6401375226386,84.8748898338989,65.4587099415071,65.8556530950836,87.3812803040581,113.439717678655,87.5543143095242,161.843386079843,70.4755870084273,86.294727262919,87.6909085512411,88.4979666461846,26.7639214216876,16.9248362664668,88.0880474710516,65.0262681209228,35.5674193248978,38.1181861538117,44.6979868128189,43.1812171275509,25.6245693234036,56.8211393797838,55.7964163536598,51.9276392027404,40.3575660336579,34.1551375288604,40.2016772766931,35.0488640927686,100.144651703227,88.1998517347106,55.2267904798094,85.3299063671867,82.8177120205762,55.7579768128033,56.4702276519618,78.0857682812095,74.574395724653,86.7482062370258,99.3116300741949,20.5219480030796,17.6903095601883,12.367416181167,20.2860121388503,22.1882986972223,32.3374831762403,38.8389785558594,36.642561251158,64.7964935123872,30.1913233707445,62.1475382606401,92.0511135687954,63.6498772426722,60.9951205974501,81.532955110409,44.3407656399851,97.2090942382587,49.0524579090498,85.2120330591444,72.0499062245702,52.764471094172,54.5119937628971,35.3191902622616,34.5220965592558,57.1378899293839,42.893332768864,55.2219370592037,52.3235495053664,49.75927615204,64.8402520938871,83.7614753080813,34.4234991113325,44.9776896476714,66.1468430749703,69.7409535223609,83.9346920328578,74.47892352529,100.016105554953,115.569868311805,90.4778270477755,90.5691744240172,79.7619253214971,93.4152551603147,86.2246794567525,92.9373628157972,88.1491744820747,71.9759748784848,50.1048500785188,128.741431451426,63.3630271885411,56.0898418106621,34.5137359683903,98.3261576427675,74.3715950133288,62.4282813992023,60.8321899334392,55.6457617778509,41.0900986137472,66.5266724943835,62.3870412173262,47.7215504483082,65.3595373164992,52.5991270565753,66.7261627277424,102.094640315753,148.115692931254,118.742717407502,84.5912914473645,111.302142183692,103.336784938132,122.394909544069,22.9978273902436,33.2576351256198,55.7936847079054,34.6261131177108,29.5479900853507,26.9598774428857,31.2755541288218,31.5150527510518,39.3499129450298,47.28345201268,41.3507531530803,79.4589441658407,38.1500726381606,29.1971108357271,29.5259531877414,30.198718863261,89.9185894667495,83.6909684895475,80.9851846493923,47.7335309007557,62.4763587322742,57.94604813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| ||
|short_description=p1@Grcc10 | |short_description=p1@Grcc10 | ||
}} | }} |
Revision as of 20:24, 13 November 2012
Short description: | p1@Grcc10 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Grcc10_5end |
Coexpression cluster: | MCL_coexpression_mm9:1364 |
Association with transcript: | 0bp_to_ENSMUST00000140423, NM_013535, uc009drn.1, uc009drp.1_5end |
EntrezGene: | Grcc10 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 6.22e-18 | 44 |
neurectodermal cell | 6.22e-18 | 44 |
neural cell | 2.25e-17 | 43 |
somatic stem cell | 2.68e-17 | 91 |
multi fate stem cell | 2.68e-17 | 91 |
embryonic cell | 6.57e-16 | 70 |
stem cell | 2.05e-15 | 97 |
neuron | 2.34e-14 | 33 |
neuronal stem cell | 2.34e-14 | 33 |
neuroblast | 2.34e-14 | 33 |
electrically signaling cell | 2.34e-14 | 33 |
electrically responsive cell | 2.73e-13 | 39 |
electrically active cell | 2.73e-13 | 39 |
CNS neuron (sensu Vertebrata) | 1.21e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.21e-12 | 23 |
oligodendrocyte precursor cell | 9.63e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.21e-23 | 73 |
nervous system | 2.95e-21 | 75 |
regional part of nervous system | 6.67e-17 | 54 |
structure with developmental contribution from neural crest | 1.61e-15 | 92 |
neural tube | 4.19e-15 | 52 |
neural rod | 4.19e-15 | 52 |
future spinal cord | 4.19e-15 | 52 |
neural keel | 4.19e-15 | 52 |
gray matter | 9.54e-15 | 34 |
regional part of forebrain | 5.09e-14 | 39 |
forebrain | 5.09e-14 | 39 |
future forebrain | 5.09e-14 | 39 |
neurectoderm | 5.35e-14 | 64 |
neural plate | 5.35e-14 | 64 |
presumptive neural plate | 5.35e-14 | 64 |
anterior neural tube | 8.23e-14 | 40 |
regional part of brain | 2.49e-13 | 46 |
ectoderm-derived structure | 2.73e-13 | 95 |
ectoderm | 2.73e-13 | 95 |
presumptive ectoderm | 2.73e-13 | 95 |
brain | 3.28e-13 | 47 |
future brain | 3.28e-13 | 47 |
brain grey matter | 2.96e-12 | 29 |
regional part of telencephalon | 2.96e-12 | 29 |
telencephalon | 2.96e-12 | 29 |
pre-chordal neural plate | 1.56e-11 | 49 |
ecto-epithelium | 3.34e-10 | 73 |
cerebral cortex | 5.86e-09 | 21 |
cerebral hemisphere | 5.86e-09 | 21 |
pallium | 5.86e-09 | 21 |
regional part of cerebral cortex | 1.31e-07 | 17 |
tube | 1.52e-07 | 114 |
anatomical conduit | 5.14e-07 | 122 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.