Coexpression cluster:C2475: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 3: | Line 3: | ||
|full_id=C2475_immature_mature_Small_serous_Bronchial_Alveolar_Tracheal | |full_id=C2475_immature_mature_Small_serous_Bronchial_Alveolar_Tracheal | ||
|id=C2475 | |id=C2475 | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype=CL:0000548!9.26e-24!679;CL:0000255!9.26e-24!679;CL:0002371!3.13e-23!588;CL:0000003!4.22e-14!722;CL:0002321!1.47e-13!250;CL:0000066!6.90e-09!253;CL:0000223!3.05e-07!58;CL:0000325!9.61e-07!87 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0005256!1. | |ontology_enrichment_uberon=UBERON:0005256!1.13e-08!122;UBERON:0003104!1.18e-08!160;UBERON:0009142!1.18e-08!160;UBERON:0003914!1.62e-08!117;UBERON:0000480!1.68e-08!625;UBERON:0005423!2.40e-08!581;UBERON:0000467!3.06e-08!624;UBERON:0002050!9.32e-08!564;UBERON:0000475!9.52e-08!264;UBERON:0000468!1.04e-07!656;UBERON:0002100!2.36e-07!199;UBERON:0000490!3.75e-07!148;UBERON:0000923!4.83e-07!560;UBERON:0010316!4.83e-07!560;UBERON:0005291!4.83e-07!560;UBERON:0006598!4.83e-07!560;UBERON:0010317!4.83e-07!560;UBERON:0002532!4.83e-07!560;UBERON:0000922!5.19e-07!592 | ||
|tf_chipseq_enrich=BCLAF1#9774;4:21.6526476101218:4.54636978835329e-06:0.000141652241743983!CCNT2#905;4:6.33620157696263:0.000620310058721564:0.00512171414521476!CEBPB#1051;4:7.97114762582482:0.000247638578809083:0.00268095009145245!CHD2#1106;4:10.3440228341169:8.73193255208051e-05:0.0012906231302105!E2F4#1874;4:12.6680603152844:3.88145892637771e-05:0.000726740209415493!E2F6#1876;4:5.01715573169739:0.0015780219347306:0.00996897125824637!EGR1#1958;4:4.98817909481014:0.00161501150007605:0.0101437446509768!EP300#2033;4:6.7739417262232:0.000474845982144264:0.00434335606316034!FOSL2#2355;4:16.9302006045617:1.2165416097647e-05:0.000303812504022515!GTF2B#2959;4:31.9438299343242:9.59435337635006e-07:4.08656065364039e-05!GTF2F1#2962;4:12.7396608767577:3.79492332235515e-05:0.000718133714193604!HEY1#23462;4:4.04011104310571:0.0037530463691798:0.018604728011713!HMGN3#9324;4:8.17854772335059:0.000223457028444047:0.00248114273800424!IRF1#3659;4:7.6371637535639:0.000293885399618549:0.0030748444450773!JUND#3727;4:6.99466394187103:0.00041768421781858:0.00391760413334124!MAX#4149;4:6.45255550900712:0.000576761319564549:0.00485385781257066!MXI1#4601;4:9.9615716287593:0.000101522475495045:0.00142339989504994!MYC#4609;4:5.2222818716094:0.00134430939527274:0.00887698083794192!PAX5#5079;4:6.66956553117783:0.000505277416948326:0.00443786629792836!POU2F2#5452;4:9.10612405774252:0.00014539566517493:0.00188399229220899!REST#5978;4:9.65002871612802:0.000115282561421917:0.00157016111532911!SIN3A#25942;4:5.40888472681514:0.00116817238488516:0.00796310656647874!SP1#6667;4:5.6983813781409:0.000948260606533398:0.00684135047566604!SREBF1#6720;4:47.0058494404883:2.04523668136926e-07:1.10217994719053e-05!SREBF2#6721;4:436.943262411348:2.70480926640298e-11:3.17401769633552e-09!STAT1#6772;4:20.7065874971992:5.43610708103893e-06:0.000165281393722453!STAT2#6773;4:65.2637711864407:5.50053512607993e-08:3.46483949356249e-06!STAT3#6774;4:10.5194649971542:8.16377768286615e-05:0.00123139338160147!TAF1#6872;4:3.34304628574529:0.00800566489870165:0.0322222767209612!TAF7#6879;4:11.4330694049239:5.85061525419808e-05:0.000968969880325394!TAL1#6886;4:29.8686166774402:1.25525650806991e-06:5.04028198563295e-05!TBP#6908;4:3.70677068709639:0.00529637781478435:0.0244215630286209!TCF12#6938;4:10.6344649021864:7.8163066689251e-05:0.00120048125322922!YY1#7528;4:4.91117074985386:0.0017187183805544:0.0106865052656261 | |tf_chipseq_enrich=BCLAF1#9774;4:21.6526476101218:4.54636978835329e-06:0.000141652241743983!CCNT2#905;4:6.33620157696263:0.000620310058721564:0.00512171414521476!CEBPB#1051;4:7.97114762582482:0.000247638578809083:0.00268095009145245!CHD2#1106;4:10.3440228341169:8.73193255208051e-05:0.0012906231302105!E2F4#1874;4:12.6680603152844:3.88145892637771e-05:0.000726740209415493!E2F6#1876;4:5.01715573169739:0.0015780219347306:0.00996897125824637!EGR1#1958;4:4.98817909481014:0.00161501150007605:0.0101437446509768!EP300#2033;4:6.7739417262232:0.000474845982144264:0.00434335606316034!FOSL2#2355;4:16.9302006045617:1.2165416097647e-05:0.000303812504022515!GTF2B#2959;4:31.9438299343242:9.59435337635006e-07:4.08656065364039e-05!GTF2F1#2962;4:12.7396608767577:3.79492332235515e-05:0.000718133714193604!HEY1#23462;4:4.04011104310571:0.0037530463691798:0.018604728011713!HMGN3#9324;4:8.17854772335059:0.000223457028444047:0.00248114273800424!IRF1#3659;4:7.6371637535639:0.000293885399618549:0.0030748444450773!JUND#3727;4:6.99466394187103:0.00041768421781858:0.00391760413334124!MAX#4149;4:6.45255550900712:0.000576761319564549:0.00485385781257066!MXI1#4601;4:9.9615716287593:0.000101522475495045:0.00142339989504994!MYC#4609;4:5.2222818716094:0.00134430939527274:0.00887698083794192!PAX5#5079;4:6.66956553117783:0.000505277416948326:0.00443786629792836!POU2F2#5452;4:9.10612405774252:0.00014539566517493:0.00188399229220899!REST#5978;4:9.65002871612802:0.000115282561421917:0.00157016111532911!SIN3A#25942;4:5.40888472681514:0.00116817238488516:0.00796310656647874!SP1#6667;4:5.6983813781409:0.000948260606533398:0.00684135047566604!SREBF1#6720;4:47.0058494404883:2.04523668136926e-07:1.10217994719053e-05!SREBF2#6721;4:436.943262411348:2.70480926640298e-11:3.17401769633552e-09!STAT1#6772;4:20.7065874971992:5.43610708103893e-06:0.000165281393722453!STAT2#6773;4:65.2637711864407:5.50053512607993e-08:3.46483949356249e-06!STAT3#6774;4:10.5194649971542:8.16377768286615e-05:0.00123139338160147!TAF1#6872;4:3.34304628574529:0.00800566489870165:0.0322222767209612!TAF7#6879;4:11.4330694049239:5.85061525419808e-05:0.000968969880325394!TAL1#6886;4:29.8686166774402:1.25525650806991e-06:5.04028198563295e-05!TBP#6908;4:3.70677068709639:0.00529637781478435:0.0244215630286209!TCF12#6938;4:10.6344649021864:7.8163066689251e-05:0.00120048125322922!YY1#7528;4:4.91117074985386:0.0017187183805544:0.0106865052656261 | ||
|tfbs_overrepresentation=0.191353,0.0774498,0.00177175,0.0631091,0.257053,0.363996,0.0569281,0.510252,0.043387,0.0341265,0.181435,0.288577,0.243414,0.164339,0.193153,0.0816702,0.0179544,0.128744,0.0698403,0.0105071,0.243245,0.172742,0.107781,0.124486,0.0550418,0.276459,0.268949,0.119094,0.186914,0.122514,0.26347,0.000621753,0.0239693,0.267529,0.0877018,0.111013,0.788552,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.017713,0.2375,0.157881,0.0480278,0.0503649,0.234372,0.145553,0.158244,0.19996,0.0715789,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.0412226,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.216289,0.470097,0.0892037,0.116917,0.155921,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,4.67924e-05,0.125428,0.290468,0.0562614,0.150119,0.368178,0.320801,0.0848546,0.0397921,0.713984,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.011916,0.00704756,0.199405,0.121709,0.347653,0.0759036,0.350158,0.184542,0.0491142,0.280878,0.0541957,0.0883058,0.423154,0.187509,0.34189,0.23573,0.0450707,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.00630747,0.215858,0.275495,0.182323,0.112709,0.134107,0.228632,0.119051,0.0196757,7.23336e-06,0.175735,8.61185e-05,0.0985137,0.0755515,0.0302655,0.164103,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.166414,0.262198,0.202388,0.701894,0.0913381,0.129544,0.110696,0.0515825,3.15833e-05,0.258146,0.186826,0.233377,0.0352845,0.0565357,2.81932e-05,0.0984158,0.29227,0.0683304,0.0447121,3.0399e-05,0.124982,0.0122552,0.192028,0.346873,0.149398,0.0530169,0.166112,0.0534404,0.392741,0.2321,0.179282,0.564569,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.0228403,3.33898e-05,0.0363736,0.15105,0.0970713,0.155237,0.236268,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.292792,0.147332,0.0622664,0.102951,0.0795624,0.0891668,0.14349,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.329956,0.346995,0.0208559,0.265132,4.35576e-10,0.0606832,0.136664,0.158184,0.147626,9.9899e-07,0.218801,0.21271,0.132273,0.0830988,0.00045518,0.184613,0.128945,0.202467,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.675167,0.00439336,0.0553945,0.10068,0.125804,0.122288,0.0624687,0.334388,0.21183,0.275612,0.235571,0.435782,1.35778e-05,0.109226,0.151958,0.178155,0.107176,0.146021,0.463127,0.15291,0.206234,0.0311341,0.239646,0.128521,0.1286,0.207017,0.14037,0.259646,0.0916845,0.324438,0.0816983,0.226367,0.211672,0.167038,0.0457509,0.106603,0.106727,0.12083,0.154253,0.0993998,0.352707,0.0834863,0.324356,0.545829,0.113754,0.0504034,0.169684,0.690367,0.00167214,0.0560372,0.0122628,0.0260311,0.407767,0.179737,0.420045,0.381628,0.332539,0.545329,0.464128,0.389374,0.594055,0.414547,0.489273,0.413223,0.639461,0.364388,0.34505,0.369161,0.500422,0.49089,0.687176,0.341822,0.000195264,0.45167,0.00261093,0.520726,2.14441e-05,0.41477,0.279946,0.524104,0.467825,0.563725,2.11929e-06,0.019108,0.624969,0.460819,0.511459,0.0126595,0.322903,0.0703732,0.380582,0.583749,0.398372,0.286293,0.606558,0.708425,0.359128,0.0146894,0.318966,0.0115272,0.547291,0.682118,0.512763,0.369971,0.0117353,0.537928,0.464342,0.0295245,0.131933,0.0301914,0.00665429,0.199727,0.279301,0.349116,0.302142,0.239545,0.432689,0.640367,0.343881,0.145459,0.0151189,7.7532e-06,0.626346,0.0565705,0.0728506,0.573659,0.0241359,0.0883859,0.0962508,0.238465,3.93066e-05,0.128535,0.6873,0.508325,0.773224,0.651927,0.093482,0.54723,0.000375458,0.393583,0.00576295,0.0596868,0.0984075,0.293026,0.000106778,0.694744,0.0678767,0.372182,0.429205,0.578951,0.365653,1.92268e-05,0.0697989,0.35234,0.072148,0.172079,0.291917,0.0181683,0.25441,0.0221108,2.24726e-05,0.517933,0.219758,0.517001,0.620475,0.266107,0.419676,0.188259,0.189182,0.0282651,0.46699,0.546448,0.198922,0.321282,0.198207,0.0616078,0.178485,0.329745,0.175552,0.129238,0.651295,0.370995,0.360161,0.429696,0.0866206,0.385297,0.126311,0.606408,0.627185,0.360203,0.333725,0.447838,0.289666,0.500627,0.513045,0.452694,0.203356,0.000711183,0.265037,0.00356416,0.167853,0.0427118,0.341771,0.424526,0.000126969,0.356381,0.184395,0.55524,0.624689,0.206945,0.304719,0.128825,0.296994,0.244339,0.117049,8.60505e-05,0.629381,0.144936,0.433821,0.64428,0.436806,0.21267,0.499072,0.0129225,0.734628,0.397546,0.0919254,0.0735469,0.0336952,0.102621,0.0760107,0.187642,0.286156,0.00372182,0.0012638,0.540322,0.0334242,0.146385,0.00124859,0.0576261,0.382413,0.164977,0.175633,0.139918,0.0685737,0.0828344,0.0272905,0.0238089,0.383126,0.354433,0.48311,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.000910501,0.270152,0.249506,0.432751,0.0660736,0.108971,0.0879235,0.235214,0.145546,0.28124,0.417003,0.251882,0.172263,0.243319,0.0637178,0.257309,0.500692,3.97507e-05,0.227224,0.238082,0.219023,0.115115,0.124916,0.0149794,0.28498,1.91811e-05,0.348988,0.00641248,0.224626,0.183585,0.271662,0.03989,0.171436,0.05892,0.0691994,0.268299,0.198844,0.104946,0.127738,0.207615,0.161213,0.118999,0.0737069,0.357807,0.621787,0.178782,0.019419,0.0866228,0.271849,0.282657,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.258624,0.064656,0.0277507,0.460406,0.0438521,0.435508,0.0439557,0.0522771,0.0787278,0.515487,0.159873,0.142462,0.143935,0.332403,0.0379537,0.6545,0.187953,0.051459,0.114868,0.0726892,0.18732,0.32305,0.278397,0.245002,0.170848,0.487259,0.302909,0.363016,0.100188,0.223102,0.107653,0.235857,0.00237223,0.191914,0.184022,0.216557,0.182956,0.116818,0.389792,0.36316,0.0625685,1.16964e-05,0.544477,0.173134,0.101893,0.142875,0.167635,0.171311,0.458838,0.548036,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.351199,0.833813,0.415079,0.278645,0.365775,0.155708,0.000219214,0.22995,0.652972,0.0760151,0.0629459,0.143933,0.0803251,0.226641,0.379174,0.0939463,0.286748,0.367925,0.0471607,0.163865,0.226359,0.0176801,0.881117,0.265324,0.279778,2.01063e-05,0.0887743,0.142302,0.0653269,0.000365517,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.172796,0.0595495,0.071232,0.149346,0.121978,0.22302,0.137423,0.284016,0.0754883,0.0501465,0.100006,0.362866,0.197817,0.251078,0.279874,0.133127,0.410303,0.223717,0.426452,0.196838,0.0826805,0.246601,0.193021,0.608002,0.202165,0.0946865,0.120618,0.079499,0.0188178,0.195618,0.127688,0.201169,0.0262879,0.24948,0.178639,0.291976,0.320355,0.364334,0.15547,0.110256,0.415419,0.14794,0.147307,0.240761,0.225961,0.124417,0.335582,0.317428,0.182843,0.130771,0.327768,0.00966571,0.147842,0.0339286,0.217363,0.119015,0.690952,0.21618,0.243266,0.107021,0.238657,0.20272,0.392453,0.61565,0.0780061,0.315336,0.028874,0.279823,0.295555,0.502112,0.724669,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.514243,0.459091,0.54832,0.502211,0.296013,0.0221603,0.537932,0.459994,0.523209,0.00885937,0.25423,0.490559,0.45013,0.500698,0.472542,0.685908,0.399934,0.529642,0.000399183,0.483077,0.0131065,0.603763,0.184287,0.627201,0.938109,0.934991,0.290703,0.622694,5.85899e-05,0.00448166,0.360199,0.608176,0.000126158,0.000453758,0.0768516,0.212703,0.56318,0.364079,0.315494,0.579886,0.421038,0.206595,0.328518,0.545608,0.310552,0.00110665,0.483764,0.00234287,0.0698158,0.209437,2.49014e-05,0.401218,0.598945,0.0016718,0.464001,0.00127982,0.579004,0.870272,0.000629358,0.137711,0.261575,0.257956,0.264245,0.379063,0.326516,0.522925,0.436016,0.475063,0.0220519,0.183837,0.507324,0.126097,0.3955,0.442469,0.212239,0.294954,0.156999,0.35974,0.00547498,0.39549,0.00259758,0.357409,0.146291,0.721266,0.15578,0.620526,0.00199725,0.759068,0.424691,0.132999,0.479581,0.62689,0.884725,0.642173,0.284496,0.512545,0.512178,0.563206,0.103692,0.684899,0.263302,0.552023,0.180735,0.775168,0.216102,0.254659,0.109605,0.397869,0.582542,0.226491,0.417131,0.0255104,0.0782409,0.503881,0.454761,0.271678,0.483658,0.452129,0.000519892,0.261657,0.346776,3.45462e-07,0.545655,0.438176,0.349112,0.741477,0.385425,0.307816,0.461541,0.386339,0.382854,0.0141241,0.478745,0.611661,0.319747,0.475047,0.557967,0.241014,0.282281,0.0159965,0.2536,0.246827,0.564333,0.70712,0.387134,0.559969,0.358813,0.668972,0.574252,0.493455,0.346636,0.457747,0.348802,0.476541,0.579645,0.447581,0.42505,0.254628,0.0382032,0.479347,0.416962,0.632833,0.378333,0.0473484,0.264038,0.22798,0.102495,0.350933,0.263896,0.0446972,0.24452,0.329284,0.242783,0.0947248,0.336551,0.210656,0.246234,0.211271,0.281295,0.267248,0.118257,0.125087,0.215123,0.00727088,0.133173,0.325254,0.266651,0.546295,0.231754,0.249415,0.0445044,0.285648,0.427316,0.0140903,0.279553,0.25563,0.240967,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.0469743,0.353147,0.112422,0.170886,0.267687,0.315656,0.0450921,0.0887542,0.267811,0.00865954,0.147872,0.189388,0.0480552,0.210125,0.292967,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.259328,0.437467,0.201057,0.15696,0.129351,0.141936,0.0786166,0.276997,0.205513,0.282389,0.251421,0.162089,0.330223,0.0136966,0.0025618,0.0231432,0.327401,0.195748,0.27845,0.161712,0.237871,0.239139,0.095257,0.328852,0.0627948,0.262022,0.274403,0.00394881,0.184534,0.248707,0.31749,0.15156,0.287598,0.313858,0.223773,0.25788,0.181895,0.253768,0.30702,0.202977,0.170837,0.327002,0.28543,0.222656,0.228479,0.127111,0.259989,0.390754,0.355805,0.0433915,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.401939,0.332746,0.00417718,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.00376397,0.0120454,0.362662,0.433518,0.184359,0.334474,0.325785,0.257476,0.0472356,0.376537,0.322827,0.229571,0.359036,0.335984,0.171704,0.208256,0.265058,0.256405,0.00120337,0.000524161,0.40806,0.151361,0.000371318,0.286696,0.150674,0.000231487,0.0331484,0.35674,0.35852,0.318525,0.213257,0.287217,0.122782,0.410951,0.0465068,0.266974,0.125746,0.112897,0.398354,0.222091,0.205977,0.34423,0.0936726,0.0671916,0.132374,0.00491013,0.22741,0.203996,0.276721,0.321965,0.264707,0.000388714 | |tfbs_overrepresentation=0.191353,0.0774498,0.00177175,0.0631091,0.257053,0.363996,0.0569281,0.510252,0.043387,0.0341265,0.181435,0.288577,0.243414,0.164339,0.193153,0.0816702,0.0179544,0.128744,0.0698403,0.0105071,0.243245,0.172742,0.107781,0.124486,0.0550418,0.276459,0.268949,0.119094,0.186914,0.122514,0.26347,0.000621753,0.0239693,0.267529,0.0877018,0.111013,0.788552,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.017713,0.2375,0.157881,0.0480278,0.0503649,0.234372,0.145553,0.158244,0.19996,0.0715789,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.0412226,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.216289,0.470097,0.0892037,0.116917,0.155921,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,4.67924e-05,0.125428,0.290468,0.0562614,0.150119,0.368178,0.320801,0.0848546,0.0397921,0.713984,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.011916,0.00704756,0.199405,0.121709,0.347653,0.0759036,0.350158,0.184542,0.0491142,0.280878,0.0541957,0.0883058,0.423154,0.187509,0.34189,0.23573,0.0450707,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.00630747,0.215858,0.275495,0.182323,0.112709,0.134107,0.228632,0.119051,0.0196757,7.23336e-06,0.175735,8.61185e-05,0.0985137,0.0755515,0.0302655,0.164103,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.166414,0.262198,0.202388,0.701894,0.0913381,0.129544,0.110696,0.0515825,3.15833e-05,0.258146,0.186826,0.233377,0.0352845,0.0565357,2.81932e-05,0.0984158,0.29227,0.0683304,0.0447121,3.0399e-05,0.124982,0.0122552,0.192028,0.346873,0.149398,0.0530169,0.166112,0.0534404,0.392741,0.2321,0.179282,0.564569,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.0228403,3.33898e-05,0.0363736,0.15105,0.0970713,0.155237,0.236268,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.292792,0.147332,0.0622664,0.102951,0.0795624,0.0891668,0.14349,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.329956,0.346995,0.0208559,0.265132,4.35576e-10,0.0606832,0.136664,0.158184,0.147626,9.9899e-07,0.218801,0.21271,0.132273,0.0830988,0.00045518,0.184613,0.128945,0.202467,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.675167,0.00439336,0.0553945,0.10068,0.125804,0.122288,0.0624687,0.334388,0.21183,0.275612,0.235571,0.435782,1.35778e-05,0.109226,0.151958,0.178155,0.107176,0.146021,0.463127,0.15291,0.206234,0.0311341,0.239646,0.128521,0.1286,0.207017,0.14037,0.259646,0.0916845,0.324438,0.0816983,0.226367,0.211672,0.167038,0.0457509,0.106603,0.106727,0.12083,0.154253,0.0993998,0.352707,0.0834863,0.324356,0.545829,0.113754,0.0504034,0.169684,0.690367,0.00167214,0.0560372,0.0122628,0.0260311,0.407767,0.179737,0.420045,0.381628,0.332539,0.545329,0.464128,0.389374,0.594055,0.414547,0.489273,0.413223,0.639461,0.364388,0.34505,0.369161,0.500422,0.49089,0.687176,0.341822,0.000195264,0.45167,0.00261093,0.520726,2.14441e-05,0.41477,0.279946,0.524104,0.467825,0.563725,2.11929e-06,0.019108,0.624969,0.460819,0.511459,0.0126595,0.322903,0.0703732,0.380582,0.583749,0.398372,0.286293,0.606558,0.708425,0.359128,0.0146894,0.318966,0.0115272,0.547291,0.682118,0.512763,0.369971,0.0117353,0.537928,0.464342,0.0295245,0.131933,0.0301914,0.00665429,0.199727,0.279301,0.349116,0.302142,0.239545,0.432689,0.640367,0.343881,0.145459,0.0151189,7.7532e-06,0.626346,0.0565705,0.0728506,0.573659,0.0241359,0.0883859,0.0962508,0.238465,3.93066e-05,0.128535,0.6873,0.508325,0.773224,0.651927,0.093482,0.54723,0.000375458,0.393583,0.00576295,0.0596868,0.0984075,0.293026,0.000106778,0.694744,0.0678767,0.372182,0.429205,0.578951,0.365653,1.92268e-05,0.0697989,0.35234,0.072148,0.172079,0.291917,0.0181683,0.25441,0.0221108,2.24726e-05,0.517933,0.219758,0.517001,0.620475,0.266107,0.419676,0.188259,0.189182,0.0282651,0.46699,0.546448,0.198922,0.321282,0.198207,0.0616078,0.178485,0.329745,0.175552,0.129238,0.651295,0.370995,0.360161,0.429696,0.0866206,0.385297,0.126311,0.606408,0.627185,0.360203,0.333725,0.447838,0.289666,0.500627,0.513045,0.452694,0.203356,0.000711183,0.265037,0.00356416,0.167853,0.0427118,0.341771,0.424526,0.000126969,0.356381,0.184395,0.55524,0.624689,0.206945,0.304719,0.128825,0.296994,0.244339,0.117049,8.60505e-05,0.629381,0.144936,0.433821,0.64428,0.436806,0.21267,0.499072,0.0129225,0.734628,0.397546,0.0919254,0.0735469,0.0336952,0.102621,0.0760107,0.187642,0.286156,0.00372182,0.0012638,0.540322,0.0334242,0.146385,0.00124859,0.0576261,0.382413,0.164977,0.175633,0.139918,0.0685737,0.0828344,0.0272905,0.0238089,0.383126,0.354433,0.48311,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.000910501,0.270152,0.249506,0.432751,0.0660736,0.108971,0.0879235,0.235214,0.145546,0.28124,0.417003,0.251882,0.172263,0.243319,0.0637178,0.257309,0.500692,3.97507e-05,0.227224,0.238082,0.219023,0.115115,0.124916,0.0149794,0.28498,1.91811e-05,0.348988,0.00641248,0.224626,0.183585,0.271662,0.03989,0.171436,0.05892,0.0691994,0.268299,0.198844,0.104946,0.127738,0.207615,0.161213,0.118999,0.0737069,0.357807,0.621787,0.178782,0.019419,0.0866228,0.271849,0.282657,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.258624,0.064656,0.0277507,0.460406,0.0438521,0.435508,0.0439557,0.0522771,0.0787278,0.515487,0.159873,0.142462,0.143935,0.332403,0.0379537,0.6545,0.187953,0.051459,0.114868,0.0726892,0.18732,0.32305,0.278397,0.245002,0.170848,0.487259,0.302909,0.363016,0.100188,0.223102,0.107653,0.235857,0.00237223,0.191914,0.184022,0.216557,0.182956,0.116818,0.389792,0.36316,0.0625685,1.16964e-05,0.544477,0.173134,0.101893,0.142875,0.167635,0.171311,0.458838,0.548036,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.351199,0.833813,0.415079,0.278645,0.365775,0.155708,0.000219214,0.22995,0.652972,0.0760151,0.0629459,0.143933,0.0803251,0.226641,0.379174,0.0939463,0.286748,0.367925,0.0471607,0.163865,0.226359,0.0176801,0.881117,0.265324,0.279778,2.01063e-05,0.0887743,0.142302,0.0653269,0.000365517,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.172796,0.0595495,0.071232,0.149346,0.121978,0.22302,0.137423,0.284016,0.0754883,0.0501465,0.100006,0.362866,0.197817,0.251078,0.279874,0.133127,0.410303,0.223717,0.426452,0.196838,0.0826805,0.246601,0.193021,0.608002,0.202165,0.0946865,0.120618,0.079499,0.0188178,0.195618,0.127688,0.201169,0.0262879,0.24948,0.178639,0.291976,0.320355,0.364334,0.15547,0.110256,0.415419,0.14794,0.147307,0.240761,0.225961,0.124417,0.335582,0.317428,0.182843,0.130771,0.327768,0.00966571,0.147842,0.0339286,0.217363,0.119015,0.690952,0.21618,0.243266,0.107021,0.238657,0.20272,0.392453,0.61565,0.0780061,0.315336,0.028874,0.279823,0.295555,0.502112,0.724669,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.514243,0.459091,0.54832,0.502211,0.296013,0.0221603,0.537932,0.459994,0.523209,0.00885937,0.25423,0.490559,0.45013,0.500698,0.472542,0.685908,0.399934,0.529642,0.000399183,0.483077,0.0131065,0.603763,0.184287,0.627201,0.938109,0.934991,0.290703,0.622694,5.85899e-05,0.00448166,0.360199,0.608176,0.000126158,0.000453758,0.0768516,0.212703,0.56318,0.364079,0.315494,0.579886,0.421038,0.206595,0.328518,0.545608,0.310552,0.00110665,0.483764,0.00234287,0.0698158,0.209437,2.49014e-05,0.401218,0.598945,0.0016718,0.464001,0.00127982,0.579004,0.870272,0.000629358,0.137711,0.261575,0.257956,0.264245,0.379063,0.326516,0.522925,0.436016,0.475063,0.0220519,0.183837,0.507324,0.126097,0.3955,0.442469,0.212239,0.294954,0.156999,0.35974,0.00547498,0.39549,0.00259758,0.357409,0.146291,0.721266,0.15578,0.620526,0.00199725,0.759068,0.424691,0.132999,0.479581,0.62689,0.884725,0.642173,0.284496,0.512545,0.512178,0.563206,0.103692,0.684899,0.263302,0.552023,0.180735,0.775168,0.216102,0.254659,0.109605,0.397869,0.582542,0.226491,0.417131,0.0255104,0.0782409,0.503881,0.454761,0.271678,0.483658,0.452129,0.000519892,0.261657,0.346776,3.45462e-07,0.545655,0.438176,0.349112,0.741477,0.385425,0.307816,0.461541,0.386339,0.382854,0.0141241,0.478745,0.611661,0.319747,0.475047,0.557967,0.241014,0.282281,0.0159965,0.2536,0.246827,0.564333,0.70712,0.387134,0.559969,0.358813,0.668972,0.574252,0.493455,0.346636,0.457747,0.348802,0.476541,0.579645,0.447581,0.42505,0.254628,0.0382032,0.479347,0.416962,0.632833,0.378333,0.0473484,0.264038,0.22798,0.102495,0.350933,0.263896,0.0446972,0.24452,0.329284,0.242783,0.0947248,0.336551,0.210656,0.246234,0.211271,0.281295,0.267248,0.118257,0.125087,0.215123,0.00727088,0.133173,0.325254,0.266651,0.546295,0.231754,0.249415,0.0445044,0.285648,0.427316,0.0140903,0.279553,0.25563,0.240967,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.0469743,0.353147,0.112422,0.170886,0.267687,0.315656,0.0450921,0.0887542,0.267811,0.00865954,0.147872,0.189388,0.0480552,0.210125,0.292967,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.259328,0.437467,0.201057,0.15696,0.129351,0.141936,0.0786166,0.276997,0.205513,0.282389,0.251421,0.162089,0.330223,0.0136966,0.0025618,0.0231432,0.327401,0.195748,0.27845,0.161712,0.237871,0.239139,0.095257,0.328852,0.0627948,0.262022,0.274403,0.00394881,0.184534,0.248707,0.31749,0.15156,0.287598,0.313858,0.223773,0.25788,0.181895,0.253768,0.30702,0.202977,0.170837,0.327002,0.28543,0.222656,0.228479,0.127111,0.259989,0.390754,0.355805,0.0433915,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.401939,0.332746,0.00417718,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.00376397,0.0120454,0.362662,0.433518,0.184359,0.334474,0.325785,0.257476,0.0472356,0.376537,0.322827,0.229571,0.359036,0.335984,0.171704,0.208256,0.265058,0.256405,0.00120337,0.000524161,0.40806,0.151361,0.000371318,0.286696,0.150674,0.000231487,0.0331484,0.35674,0.35852,0.318525,0.213257,0.287217,0.122782,0.410951,0.0465068,0.266974,0.125746,0.112897,0.398354,0.222091,0.205977,0.34423,0.0936726,0.0671916,0.132374,0.00491013,0.22741,0.203996,0.276721,0.321965,0.264707,0.000388714 | ||
}} | }} |
Revision as of 14:04, 19 October 2012
Full id: C2475_immature_mature_Small_serous_Bronchial_Alveolar_Tracheal
Phase1 CAGE Peaks
Hg19::chr19:11200122..11200155,+ | p1@LDLR |
Hg19::chr19:11200163..11200180,+ | p2@LDLR |
Hg19::chr19:11200181..11200193,+ | p4@LDLR |
Hg19::chr19:11200194..11200207,+ | p5@LDLR |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
Ontology term | p-value | n |
---|---|---|
animal cell | 9.26e-24 | 679 |
eukaryotic cell | 9.26e-24 | 679 |
somatic cell | 3.13e-23 | 588 |
native cell | 4.22e-14 | 722 |
embryonic cell | 1.47e-13 | 250 |
epithelial cell | 6.90e-09 | 253 |
endodermal cell | 3.05e-07 | 58 |
stuff accumulating cell | 9.61e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
trunk mesenchyme | 1.13e-08 | 122 |
mesenchyme | 1.18e-08 | 160 |
entire embryonic mesenchyme | 1.18e-08 | 160 |
epithelial tube | 1.62e-08 | 117 |
anatomical group | 1.68e-08 | 625 |
developing anatomical structure | 2.40e-08 | 581 |
anatomical system | 3.06e-08 | 624 |
embryonic structure | 9.32e-08 | 564 |
organism subdivision | 9.52e-08 | 264 |
multi-cellular organism | 1.04e-07 | 656 |
trunk | 2.36e-07 | 199 |
unilaminar epithelium | 3.75e-07 | 148 |
germ layer | 4.83e-07 | 560 |
germ layer / neural crest | 4.83e-07 | 560 |
embryonic tissue | 4.83e-07 | 560 |
presumptive structure | 4.83e-07 | 560 |
germ layer / neural crest derived structure | 4.83e-07 | 560 |
epiblast (generic) | 4.83e-07 | 560 |
embryo | 5.19e-07 | 592 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
TF | #promoters | Enrichment | p-value | q-value |
---|---|---|---|---|
BCLAF1#9774 | 4 | 21.6526476101218 | 4.54636978835329e-06 | 0.000141652241743983 |
CCNT2#905 | 4 | 6.33620157696263 | 0.000620310058721564 | 0.00512171414521476 |
CEBPB#1051 | 4 | 7.97114762582482 | 0.000247638578809083 | 0.00268095009145245 |
CHD2#1106 | 4 | 10.3440228341169 | 8.73193255208051e-05 | 0.0012906231302105 |
E2F4#1874 | 4 | 12.6680603152844 | 3.88145892637771e-05 | 0.000726740209415493 |
E2F6#1876 | 4 | 5.01715573169739 | 0.0015780219347306 | 0.00996897125824637 |
EGR1#1958 | 4 | 4.98817909481014 | 0.00161501150007605 | 0.0101437446509768 |
EP300#2033 | 4 | 6.7739417262232 | 0.000474845982144264 | 0.00434335606316034 |
FOSL2#2355 | 4 | 16.9302006045617 | 1.2165416097647e-05 | 0.000303812504022515 |
GTF2B#2959 | 4 | 31.9438299343242 | 9.59435337635006e-07 | 4.08656065364039e-05 |
GTF2F1#2962 | 4 | 12.7396608767577 | 3.79492332235515e-05 | 0.000718133714193604 |
HEY1#23462 | 4 | 4.04011104310571 | 0.0037530463691798 | 0.018604728011713 |
HMGN3#9324 | 4 | 8.17854772335059 | 0.000223457028444047 | 0.00248114273800424 |
IRF1#3659 | 4 | 7.6371637535639 | 0.000293885399618549 | 0.0030748444450773 |
JUND#3727 | 4 | 6.99466394187103 | 0.00041768421781858 | 0.00391760413334124 |
MAX#4149 | 4 | 6.45255550900712 | 0.000576761319564549 | 0.00485385781257066 |
MXI1#4601 | 4 | 9.9615716287593 | 0.000101522475495045 | 0.00142339989504994 |
MYC#4609 | 4 | 5.2222818716094 | 0.00134430939527274 | 0.00887698083794192 |
PAX5#5079 | 4 | 6.66956553117783 | 0.000505277416948326 | 0.00443786629792836 |
POU2F2#5452 | 4 | 9.10612405774252 | 0.00014539566517493 | 0.00188399229220899 |
REST#5978 | 4 | 9.65002871612802 | 0.000115282561421917 | 0.00157016111532911 |
SIN3A#25942 | 4 | 5.40888472681514 | 0.00116817238488516 | 0.00796310656647874 |
SP1#6667 | 4 | 5.6983813781409 | 0.000948260606533398 | 0.00684135047566604 |
SREBF1#6720 | 4 | 47.0058494404883 | 2.04523668136926e-07 | 1.10217994719053e-05 |
SREBF2#6721 | 4 | 436.943262411348 | 2.70480926640298e-11 | 3.17401769633552e-09 |
STAT1#6772 | 4 | 20.7065874971992 | 5.43610708103893e-06 | 0.000165281393722453 |
STAT2#6773 | 4 | 65.2637711864407 | 5.50053512607993e-08 | 3.46483949356249e-06 |
STAT3#6774 | 4 | 10.5194649971542 | 8.16377768286615e-05 | 0.00123139338160147 |
TAF1#6872 | 4 | 3.34304628574529 | 0.00800566489870165 | 0.0322222767209612 |
TAF7#6879 | 4 | 11.4330694049239 | 5.85061525419808e-05 | 0.000968969880325394 |
TAL1#6886 | 4 | 29.8686166774402 | 1.25525650806991e-06 | 5.04028198563295e-05 |
TBP#6908 | 4 | 3.70677068709639 | 0.00529637781478435 | 0.0244215630286209 |
TCF12#6938 | 4 | 10.6344649021864 | 7.8163066689251e-05 | 0.00120048125322922 |
YY1#7528 | 4 | 4.91117074985386 | 0.0017187183805544 | 0.0106865052656261 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.