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Coexpression cluster:C104: Difference between revisions

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|gostat_on_coexpression_clusters=GO:0050789!regulation of biological process!0.0117611210674096!7188;10178;11214;81876;5328;57533;10287;10538;57670;5187;5914$GO:0007165!signal transduction!0.0117611210674096!7188;84676;79890;11214;81876;5328;10287;57533;5187;5914$GO:0065007!biological regulation!0.0117611210674096!7188;10178;11214;81876;5328;57533;10287;10538;57670;5187;5914$GO:0007154!cell communication!0.0117611210674096!7188;84676;79890;11214;81876;5328;10287;57533;5187;5914$GO:0050794!regulation of cellular process!0.0117611210674096!7188;10178;11214;81876;57533;10538;10287;57670;5187;5914$GO:0030695!GTPase regulator activity!0.0187433768986224!79890;11214;57533;10287$GO:0004398!histidine decarboxylase activity!0.0187433768986224!3067$GO:0031432!titin binding!0.0187433768986224!84676$GO:0009966!regulation of signal transduction!0.0219531518181022!7188;11214;57533;10287$GO:0005096!GTPase activator activity!0.0219531518181022!79890;57533;10287$GO:0007264!small GTPase mediated signal transduction!0.0256806715861687!11214;57533;10287;81876$GO:0008047!enzyme activator activity!0.0395456422424184!79890;57533;10287$GO:0004871!signal transducer activity!0.0398203207331036!7188;6503;84676;11214;10287;5914;5187$GO:0060089!molecular transducer activity!0.0398203207331036!7188;6503;84676;11214;10287;5914;5187$GO:0030019!tryptase activity!0.039955865136738!23430$GO:0009649!entrainment of circadian clock!0.0440579443643909!5187$GO:0008243!plasminogen activator activity!0.0440579443643909!5328$GO:0007242!intracellular signaling cascade!0.0449662500481875!7188;11214;57533;10287;81876$GO:0048519!negative regulation of biological process!0.0449662500481875!10178;10287;5187;5328
|gostat_on_coexpression_clusters=GO:0050789!regulation of biological process!0.0117611210674096!7188;10178;11214;81876;5328;57533;10287;10538;57670;5187;5914$GO:0007165!signal transduction!0.0117611210674096!7188;84676;79890;11214;81876;5328;10287;57533;5187;5914$GO:0065007!biological regulation!0.0117611210674096!7188;10178;11214;81876;5328;57533;10287;10538;57670;5187;5914$GO:0007154!cell communication!0.0117611210674096!7188;84676;79890;11214;81876;5328;10287;57533;5187;5914$GO:0050794!regulation of cellular process!0.0117611210674096!7188;10178;11214;81876;57533;10538;10287;57670;5187;5914$GO:0030695!GTPase regulator activity!0.0187433768986224!79890;11214;57533;10287$GO:0004398!histidine decarboxylase activity!0.0187433768986224!3067$GO:0031432!titin binding!0.0187433768986224!84676$GO:0009966!regulation of signal transduction!0.0219531518181022!7188;11214;57533;10287$GO:0005096!GTPase activator activity!0.0219531518181022!79890;57533;10287$GO:0007264!small GTPase mediated signal transduction!0.0256806715861687!11214;57533;10287;81876$GO:0008047!enzyme activator activity!0.0395456422424184!79890;57533;10287$GO:0004871!signal transducer activity!0.0398203207331036!7188;6503;84676;11214;10287;5914;5187$GO:0060089!molecular transducer activity!0.0398203207331036!7188;6503;84676;11214;10287;5914;5187$GO:0030019!tryptase activity!0.039955865136738!23430$GO:0009649!entrainment of circadian clock!0.0440579443643909!5187$GO:0008243!plasminogen activator activity!0.0440579443643909!5328$GO:0007242!intracellular signaling cascade!0.0449662500481875!7188;11214;57533;10287;81876$GO:0048519!negative regulation of biological process!0.0449662500481875!10178;10287;5187;5328
|id=C104
|id=C104
|ontology_enrichment_celltype=CL:0000037!8.36e-40!172;CL:0000566!8.36e-40!172;CL:0000988!3.86e-37!182;CL:0002032!1.69e-36!165;CL:0000837!1.69e-36!165;CL:0000738!1.91e-36!140;CL:0000763!9.70e-30!112;CL:0000049!9.70e-30!112;CL:0002031!2.08e-29!124;CL:0000766!4.50e-26!76;CL:0002087!1.56e-25!119;CL:0002057!1.06e-23!42;CL:0000557!2.67e-23!71;CL:0000839!2.45e-22!70;CL:0000860!1.03e-20!45;CL:0002009!9.97e-20!65;CL:0002194!1.56e-18!63;CL:0000576!1.56e-18!63;CL:0000040!1.56e-18!63;CL:0000559!1.56e-18!63;CL:0000134!8.68e-08!358;CL:0000838!3.51e-07!52;CL:0000542!6.91e-07!53;CL:0000051!6.91e-07!53;CL:0002320!8.51e-07!365
|ontology_enrichment_celltype=CL:0002274!7.76e-118!5;CL:0000457!7.76e-118!5;CL:0002191!7.76e-118!5;CL:0000097!7.76e-118!5;CL:0000831!7.76e-118!5;CL:0002028!7.76e-118!5;CL:0000163!3.75e-66!9;CL:0000151!1.62e-17!36;CL:0000839!6.35e-10!66;CL:0000557!8.58e-10!67;CL:0000766!3.42e-09!72
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002390!2.74e-27!102;UBERON:0003061!2.74e-27!102;UBERON:0002193!1.01e-24!112;UBERON:0002371!2.11e-21!80;UBERON:0001474!2.51e-18!86;UBERON:0002405!8.09e-16!115;UBERON:0007023!5.39e-14!115;UBERON:0004765!1.06e-11!101;UBERON:0001434!1.06e-11!101;UBERON:0003081!1.19e-09!216
|ontology_enrichment_uberon=UBERON:0002371!9.08e-09!76;UBERON:0001474!3.31e-08!82;UBERON:0004765!1.43e-07!90;UBERON:0002405!2.32e-07!93;UBERON:0002390!4.88e-07!98;UBERON:0003061!4.88e-07!98;UBERON:0001434!6.45e-07!100
|tf_chipseq_enrich=GATA1#2623;38:2.83127312892537:4.78191682440238e-09:3.85949467715426e-07!GATA2#2624;49:3.43132777441838:1.18635036802646e-14:2.044575017926e-12!JUN#3725;26:1.78754702747662:0.00283707764860148:0.0153826992286517!NR3C1#2908;36:2.96169692264961:4.14717299369646e-09:3.39175098111719e-07!SMARCA4#6597;5:4.30675558538154:0.00652942205494645:0.0279535277719431!TAL1#6886;18:2.95403901205453:4.60944866978425e-05:0.000809766542680567
|tf_chipseq_enrich=GATA1#2623;38:2.83127312892537:4.78191682440238e-09:3.85949467715426e-07!GATA2#2624;49:3.43132777441838:1.18635036802646e-14:2.044575017926e-12!JUN#3725;26:1.78754702747662:0.00283707764860148:0.0153826992286517!NR3C1#2908;36:2.96169692264961:4.14717299369646e-09:3.39175098111719e-07!SMARCA4#6597;5:4.30675558538154:0.00652942205494645:0.0279535277719431!TAL1#6886;18:2.95403901205453:4.60944866978425e-05:0.000809766542680567
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,0.995744,0.431277,0.650505,0.66672,0.984457,0.844344,0.719411,0.729608,0.153434,0.998419,0.293211,0.991853,0.706289,0.972041,0.965291,0.959927,0.999973,0.987097,0.898845,0.552535,0.951234,0.814956,0.999989,0.996343,0.33929,0.94013,0.999615,0.932022,0.719153,0.970693,0.918658,0.970914,1,0.999684,0.960414,0.449958,0.601886,0.742524,0.85394,0.548755,0.158381,0.35032,0.686516,0.975032,1,0.995737,0.959769,0.951053,0.982652,0.233693,0.951273,0.999998,0.696759,0.567369,0.999994,0.528547,0.201025,0.998179,0.988767,0.99785,0.999963,0.888982,0.821508,0.618073,1,1,0.742384,0.72679,0.91572,0.415981,0.547965,0.95376,0.942876,0.889346,0.700851,0.774797,0.993225,0.452768,0.999437,0.936877,0.20695,0.251318,0.938795,0.848821,0.85736,0.703932,0.971959,0.963614,0.993286,0.692135,0.991111,0.522688,0.999989,0.934004,0.996655,0.999778,0.956973,0.999954,0.81112,0.966563,0.868183,0.750947,0.972296,0.853834,1,0.803648,0.662083,0.369357,0.889963,0.831528,0.771052,0.742776,0.991204,0.98789,0.974978,0.881491,0.995161,0.891405,0.970584,0.94778,0.968957,0.998024,0.931911,0.975489,0.801043,0.974779,0.400987,0.885586,0.958879,0.809771,0.879383,0.99992,0.961188,0.850995,0.20906,0.986366,0.826615,0.992528,0.924721,0.986818,0.96434,0.92681,0.991759,0.940778,0.999754,0.71378,0.999432,0.997563,0.98132,0.998557,1,1,0.892432,0.997537,0.926727,0.932498,0.998386,0.999973,0.994465,0.777721,0.971268,0.921584,0.999995,0.953421,0.602906,0.998835,0.901578,0.77691,0.990464,0.865158,0.95318,0.993996,0.942716,0.991661,0.737434,1,0.0654193,0.999875,0.999976,0.745223,0.944304,1,1,0.496001,0.985307,0.999996,0.999497,0.726702,0.999959,0.999967,1,0.984937,0.916375,0.999867,0.581848,0.999944,0.984866,0.96014,0.949187,0.799753,0.999244,0.428257,1,0.94715,1,1,0.0254954,1,0.999986,0.999967,1,0.997763,1,0.999751,1,1,1,0.513916,0.868891,0.0281273,0.0140737,0.944761,0.986699,0.0541719,0.0349088,0.09983,0.444567,0.99974,0.73232,0.997905,0.947904,0.205419,0.0552574,0.162032,0.466437,0.937779,0.999683,0.0686583,0.00877207,1,0.999963,0.253145,0.993515,0.576271,0.99998,0.872728,0.995378,0.648327,0.570899,1,0.999991,0.658606,0.951844,0.15341,0.999867,1,0.999991,0.885965,0.957075,0.947363,1,0.54941,0.857441,0.772367,0.920338,0.999168,0.618929,0.996003,0.866885,0.997319,0.994513,0.999705,0.989284,0.987485,0.992633,0.981674,0.880905,0.971003,0.999603,0.894675,0.987289,0.578782,0.999908,0.62518,0.851355,0.971956,0.974859,0.921951,0.999838,0.998878,0.950821,0.120031,0.128433,0.994836,0.78096,0.0868456,0.999424,0.913533,0.157224,0.804099,0.999889,0.957555,0.609452,0.792923,0.999877,0.753219,0.991517,0.86814,0.88883,0.74623,0.630271,0.998172,0.931326,0.695178,0.131099,0.999965,0.939472,0.892742,0.99936,0.106464,0.995771,0.967486,0.948051,0.956797,0.997429,0.820341,0.875142,0.817621,0.640105,0.717409,0.989198,0.888399,0.840846,0.941952,0.957711,0.0539726,0.994994,0.0323251,0.725537,0.995163,0.496369,0.919148,0.992518,0.998337,0.925498,0.844701,0.652298,0.824592,0.895636,0.994638,0.904134,0.809802,0.991919,0.966308,0.684769,0.920893,0.86604,0.935425,0.997073,0.980053,0.908297,0.767193,0.906959,0.239582,0.943087,0.999441,0.938014,0.793554,0.898991,0.604717,0.199086,0.914019,0.975639,0.909707,0.86139,0.565225,0.687508,0.238523,0.630913,0.537287,0.96513,0.961919,0.993024,0.690664,0.786648,0.7534,0.694798,0.0142602,0.957565,0.254706,0.982989,0.976655,0.997103,0.993868,0.958485,0.91411,0.727498,0.909995,0.988976,0.416456,0.689777,0.261442,0.26871,0.042848,0.948542,0.168899,0.7249,0.990149,0.749404,0.900381,0.326007,0.927961,0.940001,0.900969,0.640993,0.811369,0.992624,0.430343,0.954307,0.903589,0.239971,0.617488,0.945566,0.755825,0.97159,0.831586,0.864604,0.962747,0.962165,0.989239,0.878116,0.762734,0.993209,0.991667,0.846495,0.847765,0.969595,0.724692,0.71724,0.847478,0.998432,0.999761,0.772469,0.881238,0.927336,0.817085,0.754545,0.94886,0.982081,0.798213,0.371954,0.901373,0.597788,0.858581,0.596128,0.552262,0.294042,0.922282,0.504253,0.662454,0.774016,0.81564,0.999899,0.318386,0.931959,0.899857,0.8244,0.905967,0.286505,0.783343,0.907209,0.999607,0.523081,0.990491,0.760198,0.0953016,0.617449,0.994514,0.920242,0.248052,0.754367,0.988504,0.617389,0.981172,0.67144,0.612303,0.662676,0.521223,0.624875,0.964391,0.960295,0.650012,0.840683,0.936245,0.614556,0.971554,0.549382,0.984273,0.306222,0.698366,0.988703,0.94945,0.860181,0.653492,0.794346,0.955701,0.561916,0.137336,0.946019,0.710303,0.840332,0.890155,0.390873
}}
}}

Revision as of 10:44, 19 October 2012


Full id: C104_Mast_Basophils_immature_CD14_CD34_eye_Natural



Phase1 CAGE Peaks

Hg19::chr10:119008587..119008609,+p@chr10:119008587..119008609
+
Hg19::chr10:22629327..22629380,+p@chr10:22629327..22629380
+
Hg19::chr10:22629385..22629413,+p@chr10:22629385..22629413
+
Hg19::chr10:70091066..70091074,+p41@HNRNPH3
Hg19::chr10:70845215..70845221,+p@chr10:70845215..70845221
+
Hg19::chr10:75670452..75670464,+p15@PLAU
Hg19::chr10:75670497..75670502,+p27@PLAU
Hg19::chr10:75670546..75670555,+p25@PLAU
Hg19::chr10:80827832..80827858,+p@chr10:80827832..80827858
+
Hg19::chr11:11140283..11140298,+p@chr11:11140283..11140298
+
Hg19::chr11:114042361..114042371,+p@chr11:114042361..114042371
+
Hg19::chr11:123950597..123950605,-p@chr11:123950597..123950605
-
Hg19::chr11:123986579..123986582,+p8@VWA5A
Hg19::chr11:18913178..18913190,-p@chr11:18913178..18913190
-
Hg19::chr11:35060106..35060117,-p@chr11:35060106..35060117
-
Hg19::chr11:66035836..66035852,+p5@RAB1B
Hg19::chr11:68049932..68049949,+p@chr11:68049932..68049949
+
Hg19::chr12:109221132..109221142,+p@chr12:109221132..109221142
+
Hg19::chr12:123355673..123355677,+p@chr12:123355673..123355677
+
Hg19::chr12:123367928..123367963,+p@chr12:123367928..123367963
+
Hg19::chr12:123373444..123373465,-p3@AK022083
Hg19::chr12:2027058..2027073,+p2@ENST00000544163
Hg19::chr12:49595765..49595807,-p@chr12:49595765..49595807
-
Hg19::chr12:52405627..52405641,+p@chr12:52405627..52405641
+
Hg19::chr12:52406753..52406758,+p@chr12:52406753..52406758
+
Hg19::chr12:69309135..69309157,+p@chr12:69309135..69309157
+
Hg19::chr12:9926395..9926410,+p@chr12:9926395..9926410
+
Hg19::chr13:102107644..102107646,+p@chr13:102107644..102107646
+
Hg19::chr13:110320109..110320114,-p@chr13:110320109..110320114
-
Hg19::chr13:33858530..33858557,+p@chr13:33858530..33858557
+
Hg19::chr14:107253174..107253177,+p@chr14:107253174..107253177
+
Hg19::chr14:107254686..107254688,+p@chr14:107254686..107254688
+
Hg19::chr14:25042788..25042795,-p@chr14:25042788..25042795
-
Hg19::chr14:25043949..25043954,-p@chr14:25043949..25043954
-
Hg19::chr14:25464405..25464415,-p@chr14:25464405..25464415
-
Hg19::chr14:75988851..75988862,+p3@BATF
Hg19::chr14:75990204..75990207,-p@chr14:75990204..75990207
-
Hg19::chr14:75990216..75990238,-p@chr14:75990216..75990238
-
Hg19::chr14:75990393..75990403,+p@chr14:75990393..75990403
+
Hg19::chr14:76011156..76011159,+p@chr14:76011156..76011159
+
Hg19::chr14:76093618..76093623,+p@chr14:76093618..76093623
+
Hg19::chr14:93118081..93118090,+p33@RIN3
Hg19::chr15:50555987..50555996,-p4@HDC
Hg19::chr15:74285218..74285223,+p@chr15:74285218..74285223
+
Hg19::chr15:86124935..86124950,+p47@AKAP13
Hg19::chr15:86126058..86126070,+p14@AKAP13
Hg19::chr16:1306063..1306088,+p1@TPSD1
Hg19::chr16:1309001..1309007,-p@chr16:1309001..1309007
-
Hg19::chr16:27254686..27254705,-p@chr16:27254686..27254705
-
Hg19::chr16:27297536..27297559,+p@chr16:27297536..27297559
+
Hg19::chr16:27297597..27297620,+p@chr16:27297597..27297620
+
Hg19::chr16:27341974..27341981,-p@chr16:27341974..27341981
-
Hg19::chr17:35848660..35848677,+p@chr17:35848660..35848677
+
Hg19::chr17:38498236..38498251,+p24@RARA
Hg19::chr17:57914836..57914848,-p@chr17:57914836..57914848
-
Hg19::chr17:80217542..80217565,+p@chr17:80217542..80217565
+
Hg19::chr17:80225355..80225360,-p@chr17:80225355..80225360
-
Hg19::chr17:8050682..8050689,-p@chr17:8050682..8050689
-
Hg19::chr17:8053906..8053911,-p16@PER1
Hg19::chr17:8055163..8055196,-p@chr17:8055163..8055196
-
Hg19::chr18:72919862..72919879,+p@chr18:72919862..72919879
+
Hg19::chr19:13943041..13943045,-p@chr19:13943041..13943045
-
Hg19::chr1:194021410..194021419,+p@chr1:194021410..194021419
+
Hg19::chr1:204433825..204433835,-p@chr1:204433825..204433835
-
Hg19::chr1:208040829..208040861,-p@chr1:208040829..208040861
-
Hg19::chr1:208041790..208041810,+p@chr1:208041790..208041810
+
Hg19::chr1:211500017..211500028,+p4@TRAF5
Hg19::chr1:211665830..211665832,-p5@RD3
Hg19::chr1:234746113..234746135,-p@chr1:234746113..234746135
-
Hg19::chr1:234746222..234746233,-p@chr1:234746222..234746233
-
Hg19::chr1:26394211..26394222,-p2@TRIM63
Hg19::chr1:51442887..51442897,+p@chr1:51442887..51442897
+
Hg19::chr1:8585424..8585441,+p@chr1:8585424..8585441
+
Hg19::chr1:87652214..87652226,+p@chr1:87652214..87652226
+
Hg19::chr20:46239342..46239384,-p@chr20:46239342..46239384
-
Hg19::chr20:47527269..47527280,+p@chr20:47527269..47527280
+
Hg19::chr20:47527319..47527327,+p@chr20:47527319..47527327
+
Hg19::chr20:61546414..61546426,-p@chr20:61546414..61546426
-
Hg19::chr20:62711742..62711760,-p16@RGS19
Hg19::chr21:44876530..44876542,-p@chr21:44876530..44876542
-
Hg19::chr21:46291662..46291669,+p@chr21:46291662..46291669
+
Hg19::chr22:46440393..46440404,+p@chr22:46440393..46440404
+
Hg19::chr2:102890300..102890303,-p@chr2:102890300..102890303
-
Hg19::chr2:102890553..102890560,+p@chr2:102890553..102890560
+
Hg19::chr2:102918664..102918670,+p@chr2:102918664..102918670
+
Hg19::chr2:102921765..102921775,-p@chr2:102921765..102921775
-
Hg19::chr2:129198690..129198730,+p@chr2:129198690..129198730
+
Hg19::chr2:191334654..191334665,-p@chr2:191334654..191334665
-
Hg19::chr2:192712167..192712178,+p@chr2:192712167..192712178
+
Hg19::chr2:203971678..203971694,+p@chr2:203971678..203971694
+
Hg19::chr2:219434730..219434737,-p@chr2:219434730..219434737
-
Hg19::chr2:232476642..232476652,-p@chr2:232476642..232476652
-
Hg19::chr2:240158723..240158738,+p@chr2:240158723..240158738
+
Hg19::chr2:43439913..43439961,+p@chr2:43439913..43439961
+
Hg19::chr2:43452693..43452706,-p@chr2:43452693..43452706
-
Hg19::chr2:43494674..43494682,-p@chr2:43494674..43494682
-
Hg19::chr2:74408903..74408905,+p@chr2:74408903..74408905
+
Hg19::chr3:148673507..148673511,+p@chr3:148673507..148673511
+
Hg19::chr3:194379490..194379494,+p@chr3:194379490..194379494
+
Hg19::chr3:194382239..194382248,-p@chr3:194382239..194382248
-
Hg19::chr3:32426693..32426725,+p@chr3:32426693..32426725
+
Hg19::chr3:37494463..37494467,-p@chr3:37494463..37494467
-
Hg19::chr3:39217751..39217754,+p@chr3:39217751..39217754
+
Hg19::chr3:39544357..39544362,-p@chr3:39544357..39544362
-
Hg19::chr3:52143667..52143678,-p@chr3:52143667..52143678
-
Hg19::chr3:63965180..63965183,+p@chr3:63965180..63965183
+
Hg19::chr3:63965199..63965211,+p@chr3:63965199..63965211
+
Hg19::chr3:63965367..63965410,+p@chr3:63965367..63965410
+
Hg19::chr3:63967092..63967120,+p@chr3:63967092..63967120
+
Hg19::chr3:71256933..71256980,-p@chr3:71256933..71256980
-
Hg19::chr3:71257632..71257638,-p@chr3:71257632..71257638
-
Hg19::chr4:102210033..102210054,-p@chr4:102210033..102210054
-
Hg19::chr4:102267113..102267120,-p4@BC038734
Hg19::chr4:164479989..164479993,-p@chr4:164479989..164479993
-
Hg19::chr4:175441901..175441909,-p@chr4:175441901..175441909
-
Hg19::chr4:175441997..175442010,-p@chr4:175441997..175442010
-
Hg19::chr4:55531069..55531072,+p@chr4:55531069..55531072
+
Hg19::chr4:55589865..55589867,+p@chr4:55589865..55589867
+
Hg19::chr4:55598235..55598239,+p@chr4:55598235..55598239
+
Hg19::chr4:6910966..6910998,+p11@TBC1D14
Hg19::chr4:6912718..6912721,-p@chr4:6912718..6912721
-
Hg19::chr4:6918766..6918775,+p@chr4:6918766..6918775
+
Hg19::chr4:89615287..89615307,+p@chr4:89615287..89615307
+
Hg19::chr4:89615318..89615326,+p@chr4:89615318..89615326
+
Hg19::chr4:95260150..95260154,+p@chr4:95260150..95260154
+
Hg19::chr4:95275784..95275794,-p@chr4:95275784..95275794
-
Hg19::chr5:102880097..102880102,-p@chr5:102880097..102880102
-
Hg19::chr5:102880115..102880126,-p@chr5:102880115..102880126
-
Hg19::chr5:102880145..102880156,-p@chr5:102880145..102880156
-
Hg19::chr5:102880238..102880241,-p@chr5:102880238..102880241
-
Hg19::chr5:108747424..108747436,-p@chr5:108747424..108747436
-
Hg19::chr5:149267445..149267449,+p@chr5:149267445..149267449
+
Hg19::chr5:150794473..150794487,+p@chr5:150794473..150794487
+
Hg19::chr5:173285551..173285555,-p@chr5:173285551..173285555
-
Hg19::chr5:179476329..179476356,-p@chr5:179476329..179476356
-
Hg19::chr5:179507817..179507822,-p@chr5:179507817..179507822
-
Hg19::chr5:179517526..179517567,-p@chr5:179517526..179517567
-
Hg19::chr5:86707965..86707982,+p@chr5:86707965..86707982
+
Hg19::chr6:138190841..138190851,+p@chr6:138190841..138190851
+
Hg19::chr6:138200103..138200115,+p@chr6:138200103..138200115
+
Hg19::chr6:138202233..138202243,+p@chr6:138202233..138202243
+
Hg19::chr6:157137665..157137709,-p@chr6:157137665..157137709
-
Hg19::chr6:157154072..157154094,+p@chr6:157154072..157154094
+
Hg19::chr6:163833586..163833600,+p@chr6:163833586..163833600
+
Hg19::chr6:170125256..170125267,-p@chr6:170125256..170125267
-
Hg19::chr6:35510078..35510095,+p@chr6:35510078..35510095
+
Hg19::chr6:35510165..35510177,+p@chr6:35510165..35510177
+
Hg19::chr6:35515792..35515827,+p@chr6:35515792..35515827
+
Hg19::chr6:5431321..5431328,+p@chr6:5431321..5431328
+
Hg19::chr7:107875966..107875974,+p@chr7:107875966..107875974
+
Hg19::chr7:117371534..117371545,-p@chr7:117371534..117371545
-
Hg19::chr7:117371907..117371913,+p@chr7:117371907..117371913
+
Hg19::chr7:117432550..117432557,+p@chr7:117432550..117432557
+
Hg19::chr7:117499585..117499593,+p@chr7:117499585..117499593
+
Hg19::chr7:138643448..138643459,-p@chr7:138643448..138643459
-
Hg19::chr7:138648579..138648581,-p@chr7:138648579..138648581
-
Hg19::chr7:138650425..138650430,+p@chr7:138650425..138650430
+
Hg19::chr7:138650434..138650440,+p@chr7:138650434..138650440
+
Hg19::chr7:138665870..138665905,-p4@KIAA1549
Hg19::chr7:138665915..138665946,-p3@KIAA1549
Hg19::chr7:29232648..29232659,+p@chr7:29232648..29232659
+
Hg19::chr7:37394629..37394635,+p@chr7:37394629..37394635
+
Hg19::chr8:134013990..134014000,+p@chr8:134013990..134014000
+
Hg19::chr8:134087711..134087720,-p14@SLA
Hg19::chr8:27256513..27256546,+p@chr8:27256513..27256546
+
Hg19::chr8:28223655..28223659,+p@chr8:28223655..28223659
+
Hg19::chr8:29107560..29107569,-p@chr8:29107560..29107569
-
Hg19::chr8:29172479..29172484,+p@chr8:29172479..29172484
+
Hg19::chr8:91014165..91014183,+p@chr8:91014165..91014183
+
Hg19::chr8:91014202..91014207,+p@chr8:91014202..91014207
+
Hg19::chr9:100264166..100264193,+p@chr9:100264166..100264193
+
Hg19::chr9:116113276..116113282,-p@chr9:116113276..116113282
-
Hg19::chr9:127040669..127040685,+p@chr9:127040669..127040685
+
Hg19::chr9:139595662..139595702,+p@chr9:139595662..139595702
+
Hg19::chr9:73036504..73036509,-p@chr9:73036504..73036509
-
Hg19::chr9:73100454..73100458,+p@chr9:73100454..73100458
+
Hg19::chr9:74979223..74979257,-p8@ZFAND5
Hg19::chr9:74980687..74980701,-p@chr9:74980687..74980701
-
Hg19::chrX:124097601..124097611,-p5@ODZ1
Hg19::chrX:48819077..48819118,+p@chrX:48819077..48819118
+
Hg19::chrX:55186081..55186097,-p6@FAM104B
Hg19::chrX:55186101..55186116,-p@chrX:55186101..55186116
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0050789regulation of biological process0.0117611210674096
GO:0007165signal transduction0.0117611210674096
GO:0065007biological regulation0.0117611210674096
GO:0007154cell communication0.0117611210674096
GO:0050794regulation of cellular process0.0117611210674096
GO:0030695GTPase regulator activity0.0187433768986224
GO:0004398histidine decarboxylase activity0.0187433768986224
GO:0031432titin binding0.0187433768986224
GO:0009966regulation of signal transduction0.0219531518181022
GO:0005096GTPase activator activity0.0219531518181022
GO:0007264small GTPase mediated signal transduction0.0256806715861687
GO:0008047enzyme activator activity0.0395456422424184
GO:0004871signal transducer activity0.0398203207331036
GO:0060089molecular transducer activity0.0398203207331036
GO:0030019tryptase activity0.039955865136738
GO:0009649entrainment of circadian clock0.0440579443643909
GO:0008243plasminogen activator activity0.0440579443643909
GO:0007242intracellular signaling cascade0.0449662500481875
GO:0048519negative regulation of biological process0.0449662500481875



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
bone marrow9.08e-0976
bone element3.31e-0882
skeletal element1.43e-0790
immune system2.32e-0793
hematopoietic system4.88e-0798
blood island4.88e-0798
skeletal system6.45e-07100


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
GATA1#2623382.831273128925374.78191682440238e-093.85949467715426e-07
GATA2#2624493.431327774418381.18635036802646e-142.044575017926e-12
JUN#3725261.787547027476620.002837077648601480.0153826992286517
NR3C1#2908362.961696922649614.14717299369646e-093.39175098111719e-07
SMARCA4#659754.306755585381540.006529422054946450.0279535277719431
TAL1#6886182.954039012054534.60944866978425e-050.000809766542680567



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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