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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216326406296661,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77158992701408,0.7965548706998,0.986840815618951,0.380158170372216,0.362652616041635,0,0,0,0,0,0,0.0962312095370687,0.18440492317299,0,0,0,0,0,0,0.369758795349034,0.566970826730353,0.195743826152307,0.287880188963448,0.147674631685368,0.767606017233794,0.823437156510906,0.0501827898833331,0.0929615792816322,0,0.813300310962814,0.677873927309519,0.766485338351677,0.0525117527624536,0.0729756721489083,0.11827397755846,0.779955958909409,0.693668769806024,0.659851593232071,0.676803906292883,0.721270831767918,0.217422772389123,0,0,0,0,0,0,0,0,0.0209724030283974,0,0,0,0.111592162180487,0,0,0,0,0,0,0.0234784353458152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.527153843099087,0.702807606605628,0,0,0,0,0.430180272760694,0.375206552143423,0.0743847601857175,0.362113304938093,0.517294083593146,0.516623742860701,0.453507726516809,0,0,0,0.0414719663749819,0,0,0,0.0104277234267341,0.0552589324006763,0.0523528812100954,0.0695399179378154,0.181102009199648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0311531610083686,0,0,0,0,0,0,0,0,0,0.241796896699321,0.211279108990254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00939253503057525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173700201812769,0.10582914506561,0.738326085205242,0.80761498178626,0,0,0,0,0,0,0,0,0,0.0645692239978335,0.0255526094759027,0.326036965553742,0,0.00280142006333002,0,0.00037407584480511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115432414129512,0,0,0,0,0,0,0,0,0,0.720718537845827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.513085342652956,0.447741432360323,0.617108367504176,0.452570672671372,0.399765551626207,0.604396236116953,0.571817438523171,0.479314600501844,0.534377612708411,0.430725882985155,0,0,0,0,0,0,0.076657945369004,0,0.120876255993453,0,0.0422713750764799,0.0602502032234078,0.0388749848471105,0.051627820512194,0.0296462740744088,0.0378070963910295,0.0476191773904887,0.0766073954291401,0,0.0596387295197733,0.0682267668319101,0,0.131108301552488,0.0848798800014619,0.0564905255012162,0.0474720345729902,0,0.101427320830301,0.0330490977679454,0,0.0486884105045233,0.0594496181738161,0.116198883535529,0.0258313903385357,0.0383032227056179,0.0484220980280083,0,0.0845301845292944,0.0760168881589905,0,0.0905641158318875
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|gostat_on_MCL_coexpression=GO:0015334;high affinity oligopeptide transporter activity;0.0293650358845121;57738!GO:0004332;fructose-bisphosphate aldolase activity;0.0381369142928167;11676!GO:0016832;aldehyde-lyase activity;0.0381369142928167;11676!GO:0015198;oligopeptide transporter activity;0.0381369142928167;57738!GO:0015197;peptide transporter activity;0.0381369142928167;57738!GO:0006857;oligopeptide transport;0.0381369142928167;57738!GO:0043113;receptor clustering;0.0381369142928167;231134!GO:0031594;neuromuscular junction;0.0381369142928167;231134!GO:0005158;insulin receptor binding;0.0381369142928167;231134!GO:0007172;signal complex assembly;0.0381369142928167;231134!
|gostat_on_MCL_coexpression=GO:0015334;high affinity oligopeptide transporter activity;0.0293650358845121;57738!GO:0004332;fructose-bisphosphate aldolase activity;0.0381369142928167;11676!GO:0016832;aldehyde-lyase activity;0.0381369142928167;11676!GO:0015198;oligopeptide transporter activity;0.0381369142928167;57738!GO:0015197;peptide transporter activity;0.0381369142928167;57738!GO:0006857;oligopeptide transport;0.0381369142928167;57738!GO:0043113;receptor clustering;0.0381369142928167;231134!GO:0031594;neuromuscular junction;0.0381369142928167;231134!GO:0005158;insulin receptor binding;0.0381369142928167;231134!GO:0007172;signal complex assembly;0.0381369142928167;231134!
|ontology_enrichment_celltype=CL:0000117!1.22e-16!23;CL:0000337!1.22e-16!23;CL:0000221!4.09e-16!44;CL:0000133!4.09e-16!44;CL:0002319!1.78e-15!43;CL:0000055!2.43e-12!49;CL:0000540!2.32e-11!33;CL:0000047!2.32e-11!33;CL:0000031!2.32e-11!33;CL:0000404!2.32e-11!33;CL:0000393!1.66e-08!39;CL:0000211!1.66e-08!39;CL:0002453!5.47e-07!8
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001017!1.24e-34!73;UBERON:0000073!1.91e-33!54;UBERON:0001016!3.44e-33!75;UBERON:0004121!2.04e-32!95;UBERON:0000924!2.04e-32!95;UBERON:0006601!2.04e-32!95;UBERON:0001049!4.31e-31!52;UBERON:0005068!4.31e-31!52;UBERON:0006241!4.31e-31!52;UBERON:0007135!4.31e-31!52;UBERON:0002346!9.79e-30!64;UBERON:0003075!9.79e-30!64;UBERON:0007284!9.79e-30!64;UBERON:0002020!6.79e-29!34;UBERON:0010371!6.34e-28!73;UBERON:0000955!1.57e-25!47;UBERON:0006238!1.57e-25!47;UBERON:0002616!1.11e-24!46;UBERON:0003528!1.75e-23!29;UBERON:0002791!1.75e-23!29;UBERON:0001893!1.75e-23!29;UBERON:0003056!2.94e-21!49;UBERON:0003080!2.91e-20!40;UBERON:0002780!2.11e-19!39;UBERON:0001890!2.11e-19!39;UBERON:0006240!2.11e-19!39;UBERON:0010314!2.57e-17!92;UBERON:0000956!4.12e-17!21;UBERON:0001869!4.12e-17!21;UBERON:0000203!4.12e-17!21;UBERON:0002619!4.54e-14!17;UBERON:0003076!1.62e-11!12;UBERON:0003057!1.62e-11!12;UBERON:0002021!1.41e-10!10;UBERON:0000411!1.41e-10!10;UBERON:0001950!1.41e-10!10;UBERON:0002240!1.26e-07!6;UBERON:0005174!1.26e-07!6;UBERON:0001137!1.26e-07!6;UBERON:0002420!1.77e-07!8;UBERON:0007245!1.77e-07!8;UBERON:0010009!1.77e-07!8;UBERON:0010011!1.77e-07!8;UBERON:0000454!1.77e-07!8;UBERON:0000025!2.32e-07!114
}}
}}

Revision as of 20:58, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:78136622..78136647,+p2@Aldoc
Mm9::chr11:78136653..78136668,+p3@Aldoc
Mm9::chr11:78137906..78137917,+p13@Aldoc
Mm9::chr11:78138138..78138150,+p11@Aldoc
Mm9::chr11:78138215..78138264,+p5@Aldoc
Mm9::chr11:78138393..78138432,+p8@Aldoc
Mm9::chr11:78139435..78139445,+p@chr11:78139435..78139445
+
Mm9::chr11:78139806..78139834,+p@chr11:78139806..78139834
+
Mm9::chr16:36784785..36784814,-p@chr16:36784785..36784814
-
Mm9::chr16:36784832..36784844,-p@chr16:36784832..36784844
-
Mm9::chr17:25922269..25922288,-p2@Haghl
Mm9::chr5:35399708..35399745,+p2@Dok7


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0015334high affinity oligopeptide transporter activity0.0293650358845121
GO:0004332fructose-bisphosphate aldolase activity0.0381369142928167
GO:0016832aldehyde-lyase activity0.0381369142928167
GO:0015198oligopeptide transporter activity0.0381369142928167
GO:0015197peptide transporter activity0.0381369142928167
GO:0006857oligopeptide transport0.0381369142928167
GO:0043113receptor clustering0.0381369142928167
GO:0031594neuromuscular junction0.0381369142928167
GO:0005158insulin receptor binding0.0381369142928167
GO:0007172signal complex assembly0.0381369142928167



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
central nervous system1.24e-3473
regional part of nervous system1.91e-3354
nervous system3.44e-3375
ectoderm-derived structure2.04e-3295
ectoderm2.04e-3295
presumptive ectoderm2.04e-3295
neural tube4.31e-3152
neural rod4.31e-3152
future spinal cord4.31e-3152
neural keel4.31e-3152
neurectoderm9.79e-3064
neural plate9.79e-3064
presumptive neural plate9.79e-3064
gray matter6.79e-2934
ecto-epithelium6.34e-2873
brain1.57e-2547
future brain1.57e-2547
regional part of brain1.11e-2446
brain grey matter1.75e-2329
regional part of telencephalon1.75e-2329
telencephalon1.75e-2329
pre-chordal neural plate2.94e-2149
anterior neural tube2.91e-2040
regional part of forebrain2.11e-1939
forebrain2.11e-1939
future forebrain2.11e-1939
structure with developmental contribution from neural crest2.57e-1792
cerebral cortex4.12e-1721
cerebral hemisphere4.12e-1721
pallium4.12e-1721
regional part of cerebral cortex4.54e-1417
posterior neural tube1.62e-1112
chordal neural plate1.62e-1112
occipital lobe1.41e-1010
visual cortex1.41e-1010
neocortex1.41e-1010
spinal cord1.26e-076
dorsal region element1.26e-076
dorsum1.26e-076
basal ganglion1.77e-078
nuclear complex of neuraxis1.77e-078
aggregate regional part of brain1.77e-078
collection of basal ganglia1.77e-078
cerebral subcortex1.77e-078
tube2.32e-07114


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}