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|coexpression_dpi_cluster_scores_median=0.188061949013727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276151804430495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0800187930544913,0.092202461586495,0,0,0,0,0,0,0,0,0.0428469550828748,0.103807782330171,0.0829019901297716,0.054561543345514,0.0866689030825281,0.0951629323478916,0.183667784236853,0.28312448614836,0,0.247021199245269,0.208018178957679,0.0538027986792206,0.0380188235580625,0.0910522389263605,0.106932678779961,0.327466262382121,0.282574418667431,0.275054562543737,0.266879645037218,0.165254141453003,0,0,0,0,0,0,0,0,0,0,0,0,0.0572260417947564,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0482820047261801,0,0.0959343498639139,0,0,0,0,0,0,0.36415412284522,0.443782896763234,0,0,0,0,0.384147831067761,0.560086585846905,0.450447520824678,0.546466117898248,0.605906950817682,0.388404126133631,0.46870550109614,0.115782894547554,0,0,0.333419622429862,0.0265623655145556,0,0.0719048733411253,0.357886458668155,0.384703093399163,0.58905891472706,0.478755282097252,0.686014486800062,0,0,0,0,0,0,0,0.0788315948399074,0,0,0,0.0817525223528981,0.0457501310086346,0,0,0,0.0311531610083686,0,0,0.0479619276176895,0,0.0330077287713024,0,0,0,0,0.491767707411952,0.234833985620292,0,0,0,0.128187800254637,0.0526429550379996,0,0,0,0,0,0,0,0,0,0,0,0,0.046982063026719,0,0.148387507215387,0.142359732304287,0.118973220427006,0.0391753538423105,0,0,0,0,0,0,0,0,0,0,0,0.0652566657696677,0,0.193488531055194,0,0,0,0,0,0,0,0,0.0680912293502604,0.091558018055706,0.0336296084585476,0.0463679768904873,0.110257390186767,0.0912933562119048,0.086880916817156,0.0642538110976656,0,0,0,0,0,0,0,0.358773048807313,0.300038433784881,0,0,0.059546782971018,0,0.186047125133292,0,0.0436774795678287,0,0,0.199895454695966,0.252992651410535,0.918625898867321,0,0.0355847379748454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176391878704522,0,0,0.027046730557394,0.035450992781488,0.132495872273197,0.174247988899791,0,0,0,0,0,0,0.0127170276859676,0,0,0,0.304858797448228,0,0,0,0,0,0,0,0,0,0,0,0,0.0445418537893845,0,0.0428882730496471,0,0.034489466458534,0,0,0,0,0.0605152268483434,0,0,0.0263777085807213,0.0677982110636083,0.0698792936134432,0.0265784939468031,0.0629956915955694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0747003483965965,0,0,0,0.758775464467768,0.709463709691877,0.647125944391591,0.803906133215583,0.760041112857307,0.628475519222729,0.635757637951378,0.635983895653631,0.775784146084503,0.750979521580078,0,0.145825435924841,0.202838331043661,0.204978292423776,0,0,0.159715578577694,0.209006745960922,0.120876255993453,0.245041507634362,0.178101321237085,0.244154700692047,0.166787449282399,0.16039651392818,0.155481117085,0,0.18195093890136,0.141706336142815,0.14986111676545,0.179955924056412,0.177411968389294,0.209175722594613,0.201842612947909,0.235680926832432,0.123377838061112,0.213268521121219,0.189990830607665,0.282448737636239,0.203628016202925,0.096721241723504,0.18546004356206,0.17392086126324,0.148982201447044,0.165781451382873,0.137455755156708,0.175981558593572,0.166685587652774,0.0845301845292944,0.0760168881589905,0,0
|coexpression_dpi_cluster_scores_median=0.188061949013727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276151804430495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0800187930544913,0.092202461586495,0,0,0,0,0,0,0,0,0.0428469550828748,0.103807782330171,0.0829019901297716,0.054561543345514,0.0866689030825281,0.0951629323478916,0.183667784236853,0.28312448614836,0,0.247021199245269,0.208018178957679,0.0538027986792206,0.0380188235580625,0.0910522389263605,0.106932678779961,0.327466262382121,0.282574418667431,0.275054562543737,0.266879645037218,0.165254141453003,0,0,0,0,0,0,0,0,0,0,0,0,0.0572260417947564,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0482820047261801,0,0.0959343498639139,0,0,0,0,0,0,0.36415412284522,0.443782896763234,0,0,0,0,0.384147831067761,0.560086585846905,0.450447520824678,0.546466117898248,0.605906950817682,0.388404126133631,0.46870550109614,0.115782894547554,0,0,0.333419622429862,0.0265623655145556,0,0.0719048733411253,0.357886458668155,0.384703093399163,0.58905891472706,0.478755282097252,0.686014486800062,0,0,0,0,0,0,0,0.0788315948399074,0,0,0,0.0817525223528981,0.0457501310086346,0,0,0,0.0311531610083686,0,0,0.0479619276176895,0,0.0330077287713024,0,0,0,0,0.491767707411952,0.234833985620292,0,0,0,0.128187800254637,0.0526429550379996,0,0,0,0,0,0,0,0,0,0,0,0,0.046982063026719,0,0.148387507215387,0.142359732304287,0.118973220427006,0.0391753538423105,0,0,0,0,0,0,0,0,0,0,0,0.0652566657696677,0,0.193488531055194,0,0,0,0,0,0,0,0,0.0680912293502604,0.091558018055706,0.0336296084585476,0.0463679768904873,0.110257390186767,0.0912933562119048,0.086880916817156,0.0642538110976656,0,0,0,0,0,0,0,0.358773048807313,0.300038433784881,0,0,0.059546782971018,0,0.186047125133292,0,0.0436774795678287,0,0,0.199895454695966,0.252992651410535,0.918625898867321,0,0.0355847379748454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176391878704522,0,0,0.027046730557394,0.035450992781488,0.132495872273197,0.174247988899791,0,0,0,0,0,0,0.0127170276859676,0,0,0,0.304858797448228,0,0,0,0,0,0,0,0,0,0,0,0,0.0445418537893845,0,0.0428882730496471,0,0.034489466458534,0,0,0,0,0.0605152268483434,0,0,0.0263777085807213,0.0677982110636083,0.0698792936134432,0.0265784939468031,0.0629956915955694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0747003483965965,0,0,0,0.758775464467768,0.709463709691877,0.647125944391591,0.803906133215583,0.760041112857307,0.628475519222729,0.635757637951378,0.635983895653631,0.775784146084503,0.750979521580078,0,0.145825435924841,0.202838331043661,0.204978292423776,0,0,0.159715578577694,0.209006745960922,0.120876255993453,0.245041507634362,0.178101321237085,0.244154700692047,0.166787449282399,0.16039651392818,0.155481117085,0,0.18195093890136,0.141706336142815,0.14986111676545,0.179955924056412,0.177411968389294,0.209175722594613,0.201842612947909,0.235680926832432,0.123377838061112,0.213268521121219,0.189990830607665,0.282448737636239,0.203628016202925,0.096721241723504,0.18546004356206,0.17392086126324,0.148982201447044,0.165781451382873,0.137455755156708,0.175981558593572,0.166685587652774,0.0845301845292944,0.0760168881589905,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000540!8.41e-08!33;CL:0000047!8.41e-08!33;CL:0000031!8.41e-08!33;CL:0000404!8.41e-08!33;CL:0000117!1.12e-07!23;CL:0000337!1.12e-07!23
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002346!9.61e-26!64;UBERON:0003075!9.61e-26!64;UBERON:0007284!9.61e-26!64;UBERON:0010371!1.46e-22!73;UBERON:0001049!3.14e-21!52;UBERON:0005068!3.14e-21!52;UBERON:0006241!3.14e-21!52;UBERON:0007135!3.14e-21!52;UBERON:0000073!4.73e-21!54;UBERON:0003056!5.72e-21!49;UBERON:0001017!2.79e-20!73;UBERON:0004121!3.34e-20!95;UBERON:0000924!3.34e-20!95;UBERON:0006601!3.34e-20!95;UBERON:0001016!3.60e-19!75;UBERON:0000955!4.35e-19!47;UBERON:0006238!4.35e-19!47;UBERON:0002616!3.41e-18!46;UBERON:0002020!9.50e-18!34;UBERON:0003080!9.08e-17!40;UBERON:0010314!1.44e-16!92;UBERON:0002780!4.97e-16!39;UBERON:0001890!4.97e-16!39;UBERON:0006240!4.97e-16!39;UBERON:0003528!1.35e-15!29;UBERON:0002791!1.35e-15!29;UBERON:0001893!1.35e-15!29;UBERON:0000956!5.72e-12!21;UBERON:0001869!5.72e-12!21;UBERON:0000203!5.72e-12!21;UBERON:0002619!1.06e-10!17;UBERON:0002021!2.21e-10!10;UBERON:0000411!2.21e-10!10;UBERON:0001950!2.21e-10!10;UBERON:0000025!4.10e-07!114
}}
}}

Revision as of 20:51, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:71370224..71370227,-p@chr12:71370224..71370227
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Mm9::chr12:89961310..89961337,+p1@LOC100505240
p1@Nrxn3
Mm9::chr12:90101490..90101498,+p@chr12:90101490..90101498
+
Mm9::chr12:90195865..90195874,+p@chr12:90195865..90195874
+
Mm9::chr12:90284364..90284369,+p@chr12:90284364..90284369
+
Mm9::chr12:90327898..90327900,+p@chr12:90327898..90327900
+
Mm9::chr12:90529035..90529036,+p@chr12:90529035..90529036
+
Mm9::chr12:90642180..90642186,+p@chr12:90642180..90642186
+
Mm9::chr12:90692461..90692464,+p@chr12:90692461..90692464
+
Mm9::chr12:90840435..90840439,+p@chr12:90840435..90840439
+
Mm9::chr12:90880825..90880838,+p@chr12:90880825..90880838
+
Mm9::chr19:46400679..46400701,-p@chr19:46400679..46400701
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Mm9::chr6:37095977..37095979,-p@chr6:37095977..37095979
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Mm9::chr8:60736612..60736623,-p@chr8:60736612..60736623
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
neuron8.41e-0833
neuronal stem cell8.41e-0833
neuroblast8.41e-0833
electrically signaling cell8.41e-0833
CNS neuron (sensu Vertebrata)1.12e-0723
neuroblast (sensu Vertebrata)1.12e-0723

Uber Anatomy
Ontology termp-valuen
neurectoderm9.61e-2664
neural plate9.61e-2664
presumptive neural plate9.61e-2664
ecto-epithelium1.46e-2273
neural tube3.14e-2152
neural rod3.14e-2152
future spinal cord3.14e-2152
neural keel3.14e-2152
regional part of nervous system4.73e-2154
pre-chordal neural plate5.72e-2149
central nervous system2.79e-2073
ectoderm-derived structure3.34e-2095
ectoderm3.34e-2095
presumptive ectoderm3.34e-2095
nervous system3.60e-1975
brain4.35e-1947
future brain4.35e-1947
regional part of brain3.41e-1846
gray matter9.50e-1834
anterior neural tube9.08e-1740
structure with developmental contribution from neural crest1.44e-1692
regional part of forebrain4.97e-1639
forebrain4.97e-1639
future forebrain4.97e-1639
brain grey matter1.35e-1529
regional part of telencephalon1.35e-1529
telencephalon1.35e-1529
cerebral cortex5.72e-1221
cerebral hemisphere5.72e-1221
pallium5.72e-1221
regional part of cerebral cortex1.06e-1017
occipital lobe2.21e-1010
visual cortex2.21e-1010
neocortex2.21e-1010
tube4.10e-07114


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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