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|coexpression_dpi_cluster_scores_median=0.032256856393288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127160916153114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0453421604699641,0,0,0,0,0,0,0,0.440600448846001,0.561692158611993,0.548429419791112,0,0,0,0,0,0.0569048698027435,0.10709558895384,0.134153895493424,0.121262776601361,0.174696795136421,0.95040492965884,0.912302541335176,0.174675982941185,0.181948649422053,0.252594941239839,0.505464404962115,0.563495646123444,0.549634302593413,0.41149609379925,0.461074949486332,0.448885067922008,0.577668497461746,0.535305103370291,0.549649578064229,0.904311985500488,0.811092356859674,0.592395711471904,0,0.00866639374009615,0,0,0,0,0,0,0.0172163972625205,0,0,0,0.0572260417947564,0,0,0,0,0,0,0.0388428813195469,0,0,0.0694776635602275,0.0813235910843315,0,0.06097065795378,0,0,0,0,0,0,0,0,0,0.0843992686510426,0.174013454297431,0,0,0,0,0.382148356177952,0.17420206515257,0.50605856533091,0.510453197517881,0.575549140016121,0.389965922625323,0.454582350290123,0.00614629348060485,0,0,0,0,0.0898705446131073,0.0719048733411253,0.0609639314262262,0.0806659819199616,0.0523528812100954,0.0742264115928523,0.140512702207538,0,0,0,0,0,0,0,0.00530679818949045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262240092373978,0.402005141458476,0,0,0.0498549926872301,0.0112380654838837,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0234910315133595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357697805298242,0.31225202673023,0,0,0.0363793972937674,0.0601109820583185,0.0847275925579778,0,0.00956848033736545,0,0.104080531352405,0,0.061560945055533,0.254338300902001,0,0.0370604767192275,0.0125479033153733,0,0,0.0863034939928199,0,0,0,0,0,0,0,0,0,0,0,0,0.0528318955547673,0.0611093024506184,0,0.0443289836789829,0.135933995072293,0.115432414129512,0,0,0,0,0,0,0,0,0,0.284910225716314,0,0,0,0,0,0,0,0,0,0,0,0,0.0222709268946923,0.00712000937678835,0,0.027471976078474,0,0,0,0,0,0,0,0,0.0275863651313604,0,0.0116742709548253,0.0161467088955627,0.0433069931089932,0,0,0,0.00597420882242785,0.0212308449966822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.933610950677934,0.897895201718068,0.909332673458454,0.905578974402761,0.794897018656374,0.761229855168097,0.747880814409732,0.618283328781554,0.59537657737362,0.639263227353081,0.0214427057787972,0,0.127580061998599,0.0945084131504676,0.117349081168505,0.163373524380168,0.0871588832444397,0.081359932135904,0.215330413983256,0.0978461107777356,0.236140820892932,0.107029488765471,0.0745542549075041,0.108743595332079,0.0581328665260699,0,0.110053611258545,0.121319945057269,0.20546342740088,0.201068050435521,0.128033729919821,0.131923786075207,0.114921113763601,0.157166310227119,0.117100061478079,0.164315199042335,0.189990830607665,0.101427320830301,0.104353329269123,0.159333484216545,0.0924644954689594,0.133722242527698,0.148982201447044,0.17154810583286,0.0604687407658124,0.232759563348709,0.091291089277545,0.136973902602214,0.0255572237894399,0.0432851562487011,0.0905641158318875
|coexpression_dpi_cluster_scores_median=0.032256856393288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127160916153114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0453421604699641,0,0,0,0,0,0,0,0.440600448846001,0.561692158611993,0.548429419791112,0,0,0,0,0,0.0569048698027435,0.10709558895384,0.134153895493424,0.121262776601361,0.174696795136421,0.95040492965884,0.912302541335176,0.174675982941185,0.181948649422053,0.252594941239839,0.505464404962115,0.563495646123444,0.549634302593413,0.41149609379925,0.461074949486332,0.448885067922008,0.577668497461746,0.535305103370291,0.549649578064229,0.904311985500488,0.811092356859674,0.592395711471904,0,0.00866639374009615,0,0,0,0,0,0,0.0172163972625205,0,0,0,0.0572260417947564,0,0,0,0,0,0,0.0388428813195469,0,0,0.0694776635602275,0.0813235910843315,0,0.06097065795378,0,0,0,0,0,0,0,0,0,0.0843992686510426,0.174013454297431,0,0,0,0,0.382148356177952,0.17420206515257,0.50605856533091,0.510453197517881,0.575549140016121,0.389965922625323,0.454582350290123,0.00614629348060485,0,0,0,0,0.0898705446131073,0.0719048733411253,0.0609639314262262,0.0806659819199616,0.0523528812100954,0.0742264115928523,0.140512702207538,0,0,0,0,0,0,0,0.00530679818949045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262240092373978,0.402005141458476,0,0,0.0498549926872301,0.0112380654838837,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0234910315133595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357697805298242,0.31225202673023,0,0,0.0363793972937674,0.0601109820583185,0.0847275925579778,0,0.00956848033736545,0,0.104080531352405,0,0.061560945055533,0.254338300902001,0,0.0370604767192275,0.0125479033153733,0,0,0.0863034939928199,0,0,0,0,0,0,0,0,0,0,0,0,0.0528318955547673,0.0611093024506184,0,0.0443289836789829,0.135933995072293,0.115432414129512,0,0,0,0,0,0,0,0,0,0.284910225716314,0,0,0,0,0,0,0,0,0,0,0,0,0.0222709268946923,0.00712000937678835,0,0.027471976078474,0,0,0,0,0,0,0,0,0.0275863651313604,0,0.0116742709548253,0.0161467088955627,0.0433069931089932,0,0,0,0.00597420882242785,0.0212308449966822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.933610950677934,0.897895201718068,0.909332673458454,0.905578974402761,0.794897018656374,0.761229855168097,0.747880814409732,0.618283328781554,0.59537657737362,0.639263227353081,0.0214427057787972,0,0.127580061998599,0.0945084131504676,0.117349081168505,0.163373524380168,0.0871588832444397,0.081359932135904,0.215330413983256,0.0978461107777356,0.236140820892932,0.107029488765471,0.0745542549075041,0.108743595332079,0.0581328665260699,0,0.110053611258545,0.121319945057269,0.20546342740088,0.201068050435521,0.128033729919821,0.131923786075207,0.114921113763601,0.157166310227119,0.117100061478079,0.164315199042335,0.189990830607665,0.101427320830301,0.104353329269123,0.159333484216545,0.0924644954689594,0.133722242527698,0.148982201447044,0.17154810583286,0.0604687407658124,0.232759563348709,0.091291089277545,0.136973902602214,0.0255572237894399,0.0432851562487011,0.0905641158318875
|gostat_on_MCL_coexpression=GO:0005094;Rho GDP-dissociation inhibitor activity;0.0321723846106605;14570!GO:0008047;enzyme activator activity;0.0321723846106605;14570,22628!GO:0005092;GDP-dissociation inhibitor activity;0.0321723846106605;14570!GO:0004994;somatostatin receptor activity;0.0321723846106605;20605!GO:0005080;protein kinase C binding;0.0360251744030527;22628!GO:0007215;glutamate signaling pathway;0.0428730156033363;20605!
|gostat_on_MCL_coexpression=GO:0005094;Rho GDP-dissociation inhibitor activity;0.0321723846106605;14570!GO:0008047;enzyme activator activity;0.0321723846106605;14570,22628!GO:0005092;GDP-dissociation inhibitor activity;0.0321723846106605;14570!GO:0004994;somatostatin receptor activity;0.0321723846106605;20605!GO:0005080;protein kinase C binding;0.0360251744030527;22628!GO:0007215;glutamate signaling pathway;0.0428730156033363;20605!
|ontology_enrichment_celltype=CL:0000117!1.67e-18!23;CL:0000337!1.67e-18!23;CL:0000540!1.18e-16!33;CL:0000047!1.18e-16!33;CL:0000031!1.18e-16!33;CL:0000404!1.18e-16!33;CL:0000221!1.44e-13!44;CL:0000133!1.44e-13!44;CL:0002319!2.62e-13!43;CL:0000393!2.65e-12!39;CL:0000211!2.65e-12!39;CL:0000055!3.26e-10!49
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001017!3.27e-32!73;UBERON:0001016!1.40e-31!75;UBERON:0002346!2.45e-28!64;UBERON:0003075!2.45e-28!64;UBERON:0007284!2.45e-28!64;UBERON:0000073!2.55e-28!54;UBERON:0004121!4.67e-27!95;UBERON:0000924!4.67e-27!95;UBERON:0006601!4.67e-27!95;UBERON:0001049!1.77e-26!52;UBERON:0005068!1.77e-26!52;UBERON:0006241!1.77e-26!52;UBERON:0007135!1.77e-26!52;UBERON:0002020!2.97e-24!34;UBERON:0010371!6.45e-24!73;UBERON:0000955!9.55e-22!47;UBERON:0006238!9.55e-22!47;UBERON:0003056!4.16e-21!49;UBERON:0002616!4.75e-21!46;UBERON:0003080!2.38e-20!40;UBERON:0002780!1.26e-19!39;UBERON:0001890!1.26e-19!39;UBERON:0006240!1.26e-19!39;UBERON:0003528!1.88e-19!29;UBERON:0002791!1.88e-19!29;UBERON:0001893!1.88e-19!29;UBERON:0010314!8.94e-17!92;UBERON:0000956!2.19e-13!21;UBERON:0001869!2.19e-13!21;UBERON:0000203!2.19e-13!21;UBERON:0002619!4.02e-11!17;UBERON:0002021!1.91e-10!10;UBERON:0000411!1.91e-10!10;UBERON:0001950!1.91e-10!10;UBERON:0002420!2.61e-07!8;UBERON:0007245!2.61e-07!8;UBERON:0010009!2.61e-07!8;UBERON:0010011!2.61e-07!8;UBERON:0000454!2.61e-07!8
}}
}}

Revision as of 20:51, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:59313278..59313296,+p@chr12:59313278..59313296
+
Mm9::chr15:25293506..25293560,-p@chr15:25293506..25293560
-
Mm9::chr17:26338134..26338172,-p2@Arhgdig
Mm9::chr19:42330304..42330357,+p2@Golga7b
Mm9::chr19:7008681..7008708,-p@chr19:7008681..7008708
-
Mm9::chr4:126287178..126287185,+p4@5730409E04Rik
Mm9::chr4:126287189..126287196,+p5@5730409E04Rik
Mm9::chr5:108796914..108796941,-p@chr5:108796914..108796941
-
Mm9::chr5:136384758..136384876,-p@chr5:136384758..136384876
-
Mm9::chr5:136386488..136386525,-p@chr5:136386488..136386525
-
Mm9::chr6:38613278..38613296,+p@chr6:38613278..38613296
+
Mm9::chr7:133991422..133991433,+p4@Doc2a
Mm9::chr7:134165127..134165149,-p8@Prrt2
Mm9::chr7:31836450..31836507,-p1@Fxyd7


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0005094Rho GDP-dissociation inhibitor activity0.0321723846106605
GO:0008047enzyme activator activity0.0321723846106605
GO:0005092GDP-dissociation inhibitor activity0.0321723846106605
GO:0004994somatostatin receptor activity0.0321723846106605
GO:0005080protein kinase C binding0.0360251744030527
GO:0007215glutamate signaling pathway0.0428730156033363



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
central nervous system3.27e-3273
nervous system1.40e-3175
neurectoderm2.45e-2864
neural plate2.45e-2864
presumptive neural plate2.45e-2864
regional part of nervous system2.55e-2854
ectoderm-derived structure4.67e-2795
ectoderm4.67e-2795
presumptive ectoderm4.67e-2795
neural tube1.77e-2652
neural rod1.77e-2652
future spinal cord1.77e-2652
neural keel1.77e-2652
gray matter2.97e-2434
ecto-epithelium6.45e-2473
brain9.55e-2247
future brain9.55e-2247
pre-chordal neural plate4.16e-2149
regional part of brain4.75e-2146
anterior neural tube2.38e-2040
regional part of forebrain1.26e-1939
forebrain1.26e-1939
future forebrain1.26e-1939
brain grey matter1.88e-1929
regional part of telencephalon1.88e-1929
telencephalon1.88e-1929
structure with developmental contribution from neural crest8.94e-1792
cerebral cortex2.19e-1321
cerebral hemisphere2.19e-1321
pallium2.19e-1321
regional part of cerebral cortex4.02e-1117
occipital lobe1.91e-1010
visual cortex1.91e-1010
neocortex1.91e-1010
basal ganglion2.61e-078
nuclear complex of neuraxis2.61e-078
aggregate regional part of brain2.61e-078
collection of basal ganglia2.61e-078
cerebral subcortex2.61e-078


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}