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MCL coexpression mm9:463: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000117!3.21e-09!23;CL:0000337!3.21e-09!23;CL:0000540!3.08e-08!33;CL:0000047!3.08e-08!33;CL:0000031!3.08e-08!33;CL:0000404!3.08e-08!33;CL:0000393!4.91e-07!39;CL:0000211!4.91e-07!39
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002346!1.11e-25!64;UBERON:0003075!1.11e-25!64;UBERON:0007284!1.11e-25!64;UBERON:0000073!6.47e-23!54;UBERON:0010371!1.10e-22!73;UBERON:0001017!1.83e-22!73;UBERON:0001049!3.18e-22!52;UBERON:0005068!3.18e-22!52;UBERON:0006241!3.18e-22!52;UBERON:0007135!3.18e-22!52;UBERON:0003056!3.82e-22!49;UBERON:0001016!1.85e-21!75;UBERON:0004121!3.08e-21!95;UBERON:0000924!3.08e-21!95;UBERON:0006601!3.08e-21!95;UBERON:0000955!7.77e-20!47;UBERON:0006238!7.77e-20!47;UBERON:0002616!3.15e-19!46;UBERON:0003080!1.41e-18!40;UBERON:0010314!2.69e-18!92;UBERON:0002780!7.12e-18!39;UBERON:0001890!7.12e-18!39;UBERON:0006240!7.12e-18!39;UBERON:0002020!7.63e-15!34;UBERON:0003528!1.08e-12!29;UBERON:0002791!1.08e-12!29;UBERON:0001893!1.08e-12!29;UBERON:0000956!5.86e-09!21;UBERON:0001869!5.86e-09!21;UBERON:0000203!5.86e-09!21;UBERON:0000468!7.91e-09!333;UBERON:0000025!1.08e-08!114;UBERON:0004111!2.09e-08!122;UBERON:0002619!8.74e-08!17;UBERON:0002021!1.54e-07!10;UBERON:0000411!1.54e-07!10;UBERON:0001950!1.54e-07!10;UBERON:0000922!3.45e-07!320
}}
}}

Revision as of 20:44, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:63892980..63893029,+p1@2810001G20Rik
Mm9::chr14:58042891..58042930,+p1@Ift88
Mm9::chr15:84867509..84867573,+p1@Fam118a
Mm9::chr15:89422286..89422347,-p1@Rabl2
Mm9::chr16:32099990..32100059,+p2@1500031L02Rik
Mm9::chr16:59638950..59639017,-p1@Arl6
Mm9::chr1:59176923..59176979,-p2@Als2cr4
Mm9::chr1:63319777..63319804,+p2@Zdbf2
Mm9::chr1:88051327..88051396,+p1@Armc9
Mm9::chr2:5816371..5816454,-p1@Sec61a2
Mm9::chr4:10801685..10801754,+p1@2610301B20Rik
Mm9::chr4:12015059..12015158,-p1@Tmem67
Mm9::chr5:141178195..141178275,-p1@Iqce
Mm9::chr5:65590930..65590974,+p1@Wdr19
Mm9::chr6:34730412..34730467,+p1@Agbl3
Mm9::chr9:114549293..114549336,-p2@Cnot10


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)3.21e-0923
neuroblast (sensu Vertebrata)3.21e-0923
neuron3.08e-0833
neuronal stem cell3.08e-0833
neuroblast3.08e-0833
electrically signaling cell3.08e-0833
electrically responsive cell4.91e-0739
electrically active cell4.91e-0739

Uber Anatomy
Ontology termp-valuen
neurectoderm1.11e-2564
neural plate1.11e-2564
presumptive neural plate1.11e-2564
regional part of nervous system6.47e-2354
ecto-epithelium1.10e-2273
central nervous system1.83e-2273
neural tube3.18e-2252
neural rod3.18e-2252
future spinal cord3.18e-2252
neural keel3.18e-2252
pre-chordal neural plate3.82e-2249
nervous system1.85e-2175
ectoderm-derived structure3.08e-2195
ectoderm3.08e-2195
presumptive ectoderm3.08e-2195
brain7.77e-2047
future brain7.77e-2047
regional part of brain3.15e-1946
anterior neural tube1.41e-1840
structure with developmental contribution from neural crest2.69e-1892
regional part of forebrain7.12e-1839
forebrain7.12e-1839
future forebrain7.12e-1839
gray matter7.63e-1534
brain grey matter1.08e-1229
regional part of telencephalon1.08e-1229
telencephalon1.08e-1229
cerebral cortex5.86e-0921
cerebral hemisphere5.86e-0921
pallium5.86e-0921
multi-cellular organism7.91e-09333
tube1.08e-08114
anatomical conduit2.09e-08122
regional part of cerebral cortex8.74e-0817
occipital lobe1.54e-0710
visual cortex1.54e-0710
neocortex1.54e-0710
embryo3.45e-07320


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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