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MCL coexpression mm9:3037: Difference between revisions

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|coexpression_dpi_cluster_scores_median=0.064513712786576,0,0,0,0,0,0,0.0384474379550213,0,0,0,0.0333321253665857,0,0,0,0,0,0,0,0,0.267273341778078,0.175063590862376,0.100783889465809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.779768124052708,0.524267052362793,0.668820572136136,0.52542396233457,0.644953078647111,0.729941382989106,0,0,0,0,0.0856562580541553,0.321894675570492,0.249863259792521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113809739605487,0,0.23699733111204,0.187527419446322,0.265124516696068,0.268800900821362,0.323116468687679,0.0501827898833331,0.0761636383140293,0.28312448614836,0.505464404962115,0.501153063455708,0.641409034001154,0,0,0,0.545634506877518,0.641134440747991,0.709740702364694,0.393249215744114,0.496317222511774,0.192901363035279,0,0,0,0,0,0,0,0,0.107511441879825,0,0,0,0,0,0,0,0,0,0,0.0469568706916304,0.187015146601241,0.241100675518586,0.0689298789952095,0,0,0.114425913041783,0.260815481684814,0.0514097768499148,0,0.303670173088072,0.275221618407307,0,0.22076806852419,0.224089462352464,0,1.18600252506402,1.11885668939896,0,0,0.0791086169899956,0.0519509775191307,0.370719502440887,0.668386366133206,0.235757590732755,0.597147964022695,0.660867033365574,0.351550549444719,0.610935129016157,0.0421182837367051,0.17540391704926,0.303388537662931,0.15255853577271,0,0,0.106311701759432,0.0609639314262262,0.259220576357588,0.141243132041307,0.131014437195483,0.406918145805405,0,0,0,0,0,0,0,0,0,0.180325425270187,0,0,0,0,0,0,0,0,0,0,0,0.0660154575426048,0.0338533374824575,0.0592603993571966,0.0861996515928926,0,1.23533463862729,0.552986254947576,0,0,0,0,0.0379241007584563,0.139651895123661,0.0396664995404507,0.0756292965920817,0.016454496166584,0,0.17686373673239,0,0,0,0,0.0788703512227347,0,0,0,0,0,0.0294389011296462,0,0.0597943799295356,0,0,0,0,0,0,0,0.0614639068346955,0.098514232005992,0,0,0,0,0,0,0,0,0,0.0736278867910527,0,0,0,0,0,0,0,0,0,0,0.0795409217588648,0,0,0,0,0,0,0.511577009843473,0.440621864783354,0,0,0.119093565942036,0,0.360316995131492,0,0.0873549591356574,0.108252561213616,0.1476178069765,0.273410491217492,0.411813430771597,0.906823427125398,0.0404632395641337,0,0,0,0,0,0,0,0,0,0,0,0.175502875205899,0,0,0,0.225536506026914,0,0,0,0,0,0.123557017950668,0,0,0,0.0865478886078475,0,0,0,0,0,0.111087966368681,0.48282762626599,0.0685090053637401,0,0.0737896374598673,0.138850957170371,0.055643654597214,0,0.178958335501038,0.230386905221361,0.262261155392021,0,0,0,0.0445418537893845,0,0,0,0.0419992070256968,0,0,0.456975733921281,0,0,0,0,0,0,0,0,0,0,0,0.547539527857878,0.0801664161057822,0.0811390825906054,0.155556961500029,0.132916844396872,0.413207670179413,0.387807081478324,0.338758445881025,0.465139243436776,0.607269713251688,0.521007547889348,0.582776582160892,0.480071460295954,0.735704449401555,0.0887491219977394,0,0,0,0.0767094571656325,0.364321561268577,0.0730404042754446,0.0843504501108034,0.176546191435317,0.741782856327806,0.625546686111023,0.434359137099159,0.709649495381685,0.485046405834616,0.604396236116953,0.568212287967179,0.806441451730728,0.66512481471733,0.554949444870281,0,0,0,0.0226908451501952,0,0,0,0,0,0.0978461107777356,0.178101321237085,0,0.0610286279332345,0.133993266572362,0.0898139621139603,0.169172763866184,0.0905291472420136,0.0691409865545244,0.0549701797403976,0.0596387295197733,0.0656610974331507,0.151454401337264,0.092873634605593,0,0.132303110250762,0.0982434449953899,0.135404897539632,0.0855416720360144,0.0553034373508932,0,0,0.112441925220423,0.148982201447044,0,0.0766064454112358,0,0,0.0845301845292944,0.140689222355642,0.0865703124974023,0.0905641158318875
|coexpression_dpi_cluster_scores_median=0.064513712786576,0,0,0,0,0,0,0.0384474379550213,0,0,0,0.0333321253665857,0,0,0,0,0,0,0,0,0.267273341778078,0.175063590862376,0.100783889465809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.779768124052708,0.524267052362793,0.668820572136136,0.52542396233457,0.644953078647111,0.729941382989106,0,0,0,0,0.0856562580541553,0.321894675570492,0.249863259792521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113809739605487,0,0.23699733111204,0.187527419446322,0.265124516696068,0.268800900821362,0.323116468687679,0.0501827898833331,0.0761636383140293,0.28312448614836,0.505464404962115,0.501153063455708,0.641409034001154,0,0,0,0.545634506877518,0.641134440747991,0.709740702364694,0.393249215744114,0.496317222511774,0.192901363035279,0,0,0,0,0,0,0,0,0.107511441879825,0,0,0,0,0,0,0,0,0,0,0.0469568706916304,0.187015146601241,0.241100675518586,0.0689298789952095,0,0,0.114425913041783,0.260815481684814,0.0514097768499148,0,0.303670173088072,0.275221618407307,0,0.22076806852419,0.224089462352464,0,1.18600252506402,1.11885668939896,0,0,0.0791086169899956,0.0519509775191307,0.370719502440887,0.668386366133206,0.235757590732755,0.597147964022695,0.660867033365574,0.351550549444719,0.610935129016157,0.0421182837367051,0.17540391704926,0.303388537662931,0.15255853577271,0,0,0.106311701759432,0.0609639314262262,0.259220576357588,0.141243132041307,0.131014437195483,0.406918145805405,0,0,0,0,0,0,0,0,0,0.180325425270187,0,0,0,0,0,0,0,0,0,0,0,0.0660154575426048,0.0338533374824575,0.0592603993571966,0.0861996515928926,0,1.23533463862729,0.552986254947576,0,0,0,0,0.0379241007584563,0.139651895123661,0.0396664995404507,0.0756292965920817,0.016454496166584,0,0.17686373673239,0,0,0,0,0.0788703512227347,0,0,0,0,0,0.0294389011296462,0,0.0597943799295356,0,0,0,0,0,0,0,0.0614639068346955,0.098514232005992,0,0,0,0,0,0,0,0,0,0.0736278867910527,0,0,0,0,0,0,0,0,0,0,0.0795409217588648,0,0,0,0,0,0,0.511577009843473,0.440621864783354,0,0,0.119093565942036,0,0.360316995131492,0,0.0873549591356574,0.108252561213616,0.1476178069765,0.273410491217492,0.411813430771597,0.906823427125398,0.0404632395641337,0,0,0,0,0,0,0,0,0,0,0,0.175502875205899,0,0,0,0.225536506026914,0,0,0,0,0,0.123557017950668,0,0,0,0.0865478886078475,0,0,0,0,0,0.111087966368681,0.48282762626599,0.0685090053637401,0,0.0737896374598673,0.138850957170371,0.055643654597214,0,0.178958335501038,0.230386905221361,0.262261155392021,0,0,0,0.0445418537893845,0,0,0,0.0419992070256968,0,0,0.456975733921281,0,0,0,0,0,0,0,0,0,0,0,0.547539527857878,0.0801664161057822,0.0811390825906054,0.155556961500029,0.132916844396872,0.413207670179413,0.387807081478324,0.338758445881025,0.465139243436776,0.607269713251688,0.521007547889348,0.582776582160892,0.480071460295954,0.735704449401555,0.0887491219977394,0,0,0,0.0767094571656325,0.364321561268577,0.0730404042754446,0.0843504501108034,0.176546191435317,0.741782856327806,0.625546686111023,0.434359137099159,0.709649495381685,0.485046405834616,0.604396236116953,0.568212287967179,0.806441451730728,0.66512481471733,0.554949444870281,0,0,0,0.0226908451501952,0,0,0,0,0,0.0978461107777356,0.178101321237085,0,0.0610286279332345,0.133993266572362,0.0898139621139603,0.169172763866184,0.0905291472420136,0.0691409865545244,0.0549701797403976,0.0596387295197733,0.0656610974331507,0.151454401337264,0.092873634605593,0,0.132303110250762,0.0982434449953899,0.135404897539632,0.0855416720360144,0.0553034373508932,0,0,0.112441925220423,0.148982201447044,0,0.0766064454112358,0,0,0.0845301845292944,0.140689222355642,0.0865703124974023,0.0905641158318875
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000073!3.17e-17!54;UBERON:0002346!6.32e-17!64;UBERON:0003075!6.32e-17!64;UBERON:0007284!6.32e-17!64;UBERON:0001017!1.51e-16!73;UBERON:0001049!6.65e-16!52;UBERON:0005068!6.65e-16!52;UBERON:0006241!6.65e-16!52;UBERON:0007135!6.65e-16!52;UBERON:0001016!1.70e-15!75;UBERON:0002020!2.39e-15!34;UBERON:0000955!1.21e-13!47;UBERON:0006238!1.21e-13!47;UBERON:0004121!2.04e-13!95;UBERON:0000924!2.04e-13!95;UBERON:0006601!2.04e-13!95;UBERON:0002616!6.38e-13!46;UBERON:0003528!6.68e-13!29;UBERON:0002791!6.68e-13!29;UBERON:0001893!6.68e-13!29;UBERON:0010371!8.21e-13!73;UBERON:0000956!1.71e-12!21;UBERON:0001869!1.71e-12!21;UBERON:0000203!1.71e-12!21;UBERON:0003056!1.06e-11!49;UBERON:0010314!5.84e-11!92;UBERON:0003080!6.94e-11!40;UBERON:0002619!1.04e-10!17;UBERON:0002780!2.09e-10!39;UBERON:0001890!2.09e-10!39;UBERON:0006240!2.09e-10!39;UBERON:0002021!2.13e-08!10;UBERON:0000411!2.13e-08!10;UBERON:0001950!2.13e-08!10
}}
}}

Revision as of 19:25, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr16:22469336..22469353,-p@chr16:22469336..22469353
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Mm9::chr16:22657238..22657251,-p3@Dgkg
Mm9::chr16:22657255..22657315,-p1@Dgkg


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
regional part of nervous system3.17e-1754
neurectoderm6.32e-1764
neural plate6.32e-1764
presumptive neural plate6.32e-1764
central nervous system1.51e-1673
neural tube6.65e-1652
neural rod6.65e-1652
future spinal cord6.65e-1652
neural keel6.65e-1652
nervous system1.70e-1575
gray matter2.39e-1534
brain1.21e-1347
future brain1.21e-1347
ectoderm-derived structure2.04e-1395
ectoderm2.04e-1395
presumptive ectoderm2.04e-1395
regional part of brain6.38e-1346
brain grey matter6.68e-1329
regional part of telencephalon6.68e-1329
telencephalon6.68e-1329
ecto-epithelium8.21e-1373
cerebral cortex1.71e-1221
cerebral hemisphere1.71e-1221
pallium1.71e-1221
pre-chordal neural plate1.06e-1149
structure with developmental contribution from neural crest5.84e-1192
anterior neural tube6.94e-1140
regional part of cerebral cortex1.04e-1017
regional part of forebrain2.09e-1039
forebrain2.09e-1039
future forebrain2.09e-1039
occipital lobe2.13e-0810
visual cortex2.13e-0810
neocortex2.13e-0810


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}