Personal tools

MCL coexpression mm9:2929: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=0.0293474950327623,-0.804930915799197,-0.788686126859426,-0.690825245800634,-0.972082653859065,-0.376801115372706,-0.18634781704251,-0.0327684203207013,-0.312018273321805,-0.343731612243648,0.119481670658995,0.121289839651513,-0.027688070535653,-0.00101502151102584,-0.209799301759174,-0.110175684764582,-0.205770193602584,-0.00511291215849541,0.0147046260439672,-0.0698412725265334,-0.0450805273397887,0.0178832957804615,0.0214243802922973,-0.29782411782572,-0.325603817412111,-0.710419329273447,-0.591765643999385,-0.444477855061628,-0.261440551812379,-0.259630135744449,-0.228265898773337,0.0305448530201227,0.0313718398790452,0.111414301405939,0.00489615102364471,-0.0320897698528426,-0.107316180492941,-0.602956858140467,-0.591005053180996,-0.459413338872291,-0.58956054727036,-0.644617611961202,-0.631815252986993,-0.248796740955877,-0.165887785809437,-0.181130507356647,-0.497231452992459,-0.342006410328626,-0.294074831687436,-0.139390559008283,-0.173021140398953,-0.512422051090611,-0.11963187263268,-0.167243429295623,-0.22863235459412,-0.183243100731126,-0.101176554138185,-0.204367741683034,0.191596844504908,0.276128938312611,0.187022484760202,-0.386603669106038,-0.541410974757548,-0.632548635997248,-0.510337329974916,-0.74969966458311,-0.561059707026601,-0.617186269559281,0.140538642372301,0.159851004886318,0.152578882156365,0.0892845680478871,0.130242970727979,0.206368958325208,0.23812336985701,0.194893863754796,0.099663818876494,0.0769360866443636,0.110697239307238,0.234585216839919,0.298635457879583,0.29713184654126,0.105634620787306,0.0659159868854879,0.0622016394009099,0.148289849906693,0.19150698190613,0.204066491964486,-0.168096406859874,-0.134988697292354,-0.0615717292631943,-0.275233173463534,-0.344296186139173,-0.210590866883546,-0.23641183227431,-0.0958456034029245,-0.0945399772635467,-0.125804756677381,-0.193929728229899,-0.284537259028156,-0.0384212804313897,-0.189081898861323,-0.436730755905109,-0.638255339086366,-0.148842290359301,-0.170691383351382,-0.103379678468464,-0.234367927319908,-0.0381296181826469,0.00800758285530323,0.0585754918134731,0.0494790374484551,-0.0212210725043931,-0.0118949459524269,0.0567006148510525,-0.162630267822071,0.0994504179649749,-0.138291447819003,-0.210826915283568,-0.0137660269012967,-0.162619091899433,0.00313027445214953,-0.202706466842624,0.107921638072582,0.125508634341484,-0.204023591761245,0.0134536243080439,-0.0775961640723719,-0.0118105987820034,0.185853979285988,0.143216970015172,0.186225031500156,0.14790525304191,0.180405538422211,0.152511108338093,0.154440319949294,0.0624153375535026,-0.100211077252702,-0.0803709426094528,-0.0289669571560072,0.259518567366797,0.141597057219737,0.172833235417846,0.18391064354931,0.0890523888956758,0.15280338249655,0.0957069692826333,0.0337972951013625,0.311444248412009,0.282092387194766,0.211850228097956,0.129102702357664,0.211018269213915,0.145991442491678,0.150065052509981,0.158809722248183,-0.105081484835521,-0.0958497350395637,-0.146706625710681,0.0855624803385937,0.103525631667455,0.137178535236526,0.126973032256477,0.0498009936465278,0.0735266701798363,0.0503902363603894,-0.0364766817520761,0.0121534158450405,-0.000576699677622194,0.0298754530960841,-0.0773229488790628,-0.0194677440326834,-0.0427518036363594,-0.0660477653585845,0.188616675163396,0.233392908601129,-0.536798985937782,-0.334277989816142,0.22064680790983,0.231020630704796,0.110327947681956,-0.0148620526389704,-0.0104450873427815,-0.0799330845965167,-0.274105018433217,-0.0837115133534987,-0.160381997133199,-0.0744989483333744,-0.132087990798648,-0.125307663630975,-0.158551192304315,-0.203603136287706,0.137685742507166,0.15392297641313,0.0346781467194142,0.0664188151406515,0.0768745701965561,0.0233689280938427,0.00642538279382521,-0.146076351417234,-0.0259345365692003,-0.0940703447352205,-0.214179793741793,-0.0111447484301768,-0.0105637697086485,-0.00943674281203943,-0.0945483420840565,-0.0615853376863746,-0.112535966575825,-0.14047074841128,-0.0537541561783337,-0.0675527969057144,-0.170980615852597,-0.0591664087112738,-0.131191046016625,-0.18128369072872,-0.12897196999285,-0.255203621930146,-0.106332665520137,0.1346733081486,0.175359132454235,0.130584550058314,0.13074735226825,0.0111124036277448,-0.0451668084380767,-0.126245028692631,0.0347729836068027,0.00938886720624033,-0.0640120414060987,-0.0440583835104402,-0.0716445477983363,-0.0628923666645285,-0.122573878057666,-0.218246012807291,-0.107107229172133,-0.0665966528432005,0.175504841580794,0.175062352292248,0,0.0945654230945965,-0.036969530845806,-0.00851540766307024,-0.00525535245829767,0.010939101360538,0.0295857710794787,-0.0919446047905388,-0.00319300897040597,0.0129964811945873,0.00704028859988837,0.164051914030027,0.014296315152643,0.131636659313499,0.0814227900683413,-0.0288150758801589,-0.0557234564892395,0.162900319787818,0.0710134452459596,0.0980176255301566,-0.0282366940017584,0.0721517543437351,-0.0901595858812523,0.0250179123002072,0.119735899665709,0.00462034480698348,-0.127348467211699,-0.0302270035264767,0.105096018135946,0.183876728811892,0.218067098125529,0.100105984928672,0.105711188537637,0.135391651286567,0.0857523635598427,0.137801937212689,0.0397603490034053,-0.0607894837868468,-0.112058904350416,-0.132316317864355,0.0402203784074056,-0.0121097938264019,-0.0581540868664012,-0.0600391258467718,-0.153799594331086,0.149632775515647,-0.175176744793367,0.0590152063809577,0.0433614103306119,-0.0585298011418036,-0.041357766539355,-0.152468569477268,-0.0244286529173596,-0.0185697098951996,-0.0777408804037634,-0.251513222183146,0.170098675297976,0.143248348356803,0.106120890909499,0.0580857990226844,0.00345529025783531,-0.00342209888649281,-0.0884715263190905,-0.157610120520569,-0.193223242522078,-0.12720418693315,-0.0190394120314783,0.188446094941575,0.147812487954971,0.0282527475004324,0.121454012085151,0.128601251821959,0.120865133139906,-0.0260421184790474,0.101535063532912,0.0591024664865818,-0.0453541884736826,-0.110459988410712,0.0880792448243157,0.115382011568451,0.0697448205408449,0.0122147973279696,0.0201693155302807,0.0127109875821052,-0.0713830738410073,0.0292299277298813,0.011602211753579,0.00393530517989271,-0.0237667044389733,-0.0695045619842229,-0.0541670523790152,-0.0818540308199278,0.0530896236220235,0.201529453653021,0.00394567280961078,-0.0725670367575693,-0.111538449703373,-0.0162509823241888,-0.112880498837025,-0.0396692668709866,0.232701963918369,0.201351426729853,0.246853838355938,0.0767709023623251,0.14444958271108,0.169972888458345,0.114819245443242,0.147800704367355,0.239921369483201,0.126416055053791,0.258080830217855,0.229051521232175,0.226799814822721,0.0806165999937958,0.0371650308296223,-0.0748540537223357,0.0437993566988457,0.0651625441254762,-0.00302756542663385,0.027204156323702,-0.00366314914085408,0.0299746018287936,0.0319035741876674,0.00770641448732978,-0.0030260615905271,0.028736902333369,-0.0559050537119252,-0.0387647712639883,0.0153566998439876,0.0390457945992448,0.043261262561783,0.0380436555629826,0.0486375049447145,0.0236504485115352,0.038708446388424,0.0417741568110992,0.00604084102998348,0.0570028776088891,0.0226223723839363,0.0298142702289581,-0.033463718856964,0.000260676615158273,0.0561246648565858,0.00914877825111549,-0.00866592324449011,0.108449188746822,-0.0117480394862133,0.0238107565007626,0.00394163340679432,-0.0332055069109649,-0.0182780071979785
|coexpression_dpi_cluster_scores_median=0.0293474950327623,-0.804930915799197,-0.788686126859426,-0.690825245800634,-0.972082653859065,-0.376801115372706,-0.18634781704251,-0.0327684203207013,-0.312018273321805,-0.343731612243648,0.119481670658995,0.121289839651513,-0.027688070535653,-0.00101502151102584,-0.209799301759174,-0.110175684764582,-0.205770193602584,-0.00511291215849541,0.0147046260439672,-0.0698412725265334,-0.0450805273397887,0.0178832957804615,0.0214243802922973,-0.29782411782572,-0.325603817412111,-0.710419329273447,-0.591765643999385,-0.444477855061628,-0.261440551812379,-0.259630135744449,-0.228265898773337,0.0305448530201227,0.0313718398790452,0.111414301405939,0.00489615102364471,-0.0320897698528426,-0.107316180492941,-0.602956858140467,-0.591005053180996,-0.459413338872291,-0.58956054727036,-0.644617611961202,-0.631815252986993,-0.248796740955877,-0.165887785809437,-0.181130507356647,-0.497231452992459,-0.342006410328626,-0.294074831687436,-0.139390559008283,-0.173021140398953,-0.512422051090611,-0.11963187263268,-0.167243429295623,-0.22863235459412,-0.183243100731126,-0.101176554138185,-0.204367741683034,0.191596844504908,0.276128938312611,0.187022484760202,-0.386603669106038,-0.541410974757548,-0.632548635997248,-0.510337329974916,-0.74969966458311,-0.561059707026601,-0.617186269559281,0.140538642372301,0.159851004886318,0.152578882156365,0.0892845680478871,0.130242970727979,0.206368958325208,0.23812336985701,0.194893863754796,0.099663818876494,0.0769360866443636,0.110697239307238,0.234585216839919,0.298635457879583,0.29713184654126,0.105634620787306,0.0659159868854879,0.0622016394009099,0.148289849906693,0.19150698190613,0.204066491964486,-0.168096406859874,-0.134988697292354,-0.0615717292631943,-0.275233173463534,-0.344296186139173,-0.210590866883546,-0.23641183227431,-0.0958456034029245,-0.0945399772635467,-0.125804756677381,-0.193929728229899,-0.284537259028156,-0.0384212804313897,-0.189081898861323,-0.436730755905109,-0.638255339086366,-0.148842290359301,-0.170691383351382,-0.103379678468464,-0.234367927319908,-0.0381296181826469,0.00800758285530323,0.0585754918134731,0.0494790374484551,-0.0212210725043931,-0.0118949459524269,0.0567006148510525,-0.162630267822071,0.0994504179649749,-0.138291447819003,-0.210826915283568,-0.0137660269012967,-0.162619091899433,0.00313027445214953,-0.202706466842624,0.107921638072582,0.125508634341484,-0.204023591761245,0.0134536243080439,-0.0775961640723719,-0.0118105987820034,0.185853979285988,0.143216970015172,0.186225031500156,0.14790525304191,0.180405538422211,0.152511108338093,0.154440319949294,0.0624153375535026,-0.100211077252702,-0.0803709426094528,-0.0289669571560072,0.259518567366797,0.141597057219737,0.172833235417846,0.18391064354931,0.0890523888956758,0.15280338249655,0.0957069692826333,0.0337972951013625,0.311444248412009,0.282092387194766,0.211850228097956,0.129102702357664,0.211018269213915,0.145991442491678,0.150065052509981,0.158809722248183,-0.105081484835521,-0.0958497350395637,-0.146706625710681,0.0855624803385937,0.103525631667455,0.137178535236526,0.126973032256477,0.0498009936465278,0.0735266701798363,0.0503902363603894,-0.0364766817520761,0.0121534158450405,-0.000576699677622194,0.0298754530960841,-0.0773229488790628,-0.0194677440326834,-0.0427518036363594,-0.0660477653585845,0.188616675163396,0.233392908601129,-0.536798985937782,-0.334277989816142,0.22064680790983,0.231020630704796,0.110327947681956,-0.0148620526389704,-0.0104450873427815,-0.0799330845965167,-0.274105018433217,-0.0837115133534987,-0.160381997133199,-0.0744989483333744,-0.132087990798648,-0.125307663630975,-0.158551192304315,-0.203603136287706,0.137685742507166,0.15392297641313,0.0346781467194142,0.0664188151406515,0.0768745701965561,0.0233689280938427,0.00642538279382521,-0.146076351417234,-0.0259345365692003,-0.0940703447352205,-0.214179793741793,-0.0111447484301768,-0.0105637697086485,-0.00943674281203943,-0.0945483420840565,-0.0615853376863746,-0.112535966575825,-0.14047074841128,-0.0537541561783337,-0.0675527969057144,-0.170980615852597,-0.0591664087112738,-0.131191046016625,-0.18128369072872,-0.12897196999285,-0.255203621930146,-0.106332665520137,0.1346733081486,0.175359132454235,0.130584550058314,0.13074735226825,0.0111124036277448,-0.0451668084380767,-0.126245028692631,0.0347729836068027,0.00938886720624033,-0.0640120414060987,-0.0440583835104402,-0.0716445477983363,-0.0628923666645285,-0.122573878057666,-0.218246012807291,-0.107107229172133,-0.0665966528432005,0.175504841580794,0.175062352292248,0,0.0945654230945965,-0.036969530845806,-0.00851540766307024,-0.00525535245829767,0.010939101360538,0.0295857710794787,-0.0919446047905388,-0.00319300897040597,0.0129964811945873,0.00704028859988837,0.164051914030027,0.014296315152643,0.131636659313499,0.0814227900683413,-0.0288150758801589,-0.0557234564892395,0.162900319787818,0.0710134452459596,0.0980176255301566,-0.0282366940017584,0.0721517543437351,-0.0901595858812523,0.0250179123002072,0.119735899665709,0.00462034480698348,-0.127348467211699,-0.0302270035264767,0.105096018135946,0.183876728811892,0.218067098125529,0.100105984928672,0.105711188537637,0.135391651286567,0.0857523635598427,0.137801937212689,0.0397603490034053,-0.0607894837868468,-0.112058904350416,-0.132316317864355,0.0402203784074056,-0.0121097938264019,-0.0581540868664012,-0.0600391258467718,-0.153799594331086,0.149632775515647,-0.175176744793367,0.0590152063809577,0.0433614103306119,-0.0585298011418036,-0.041357766539355,-0.152468569477268,-0.0244286529173596,-0.0185697098951996,-0.0777408804037634,-0.251513222183146,0.170098675297976,0.143248348356803,0.106120890909499,0.0580857990226844,0.00345529025783531,-0.00342209888649281,-0.0884715263190905,-0.157610120520569,-0.193223242522078,-0.12720418693315,-0.0190394120314783,0.188446094941575,0.147812487954971,0.0282527475004324,0.121454012085151,0.128601251821959,0.120865133139906,-0.0260421184790474,0.101535063532912,0.0591024664865818,-0.0453541884736826,-0.110459988410712,0.0880792448243157,0.115382011568451,0.0697448205408449,0.0122147973279696,0.0201693155302807,0.0127109875821052,-0.0713830738410073,0.0292299277298813,0.011602211753579,0.00393530517989271,-0.0237667044389733,-0.0695045619842229,-0.0541670523790152,-0.0818540308199278,0.0530896236220235,0.201529453653021,0.00394567280961078,-0.0725670367575693,-0.111538449703373,-0.0162509823241888,-0.112880498837025,-0.0396692668709866,0.232701963918369,0.201351426729853,0.246853838355938,0.0767709023623251,0.14444958271108,0.169972888458345,0.114819245443242,0.147800704367355,0.239921369483201,0.126416055053791,0.258080830217855,0.229051521232175,0.226799814822721,0.0806165999937958,0.0371650308296223,-0.0748540537223357,0.0437993566988457,0.0651625441254762,-0.00302756542663385,0.027204156323702,-0.00366314914085408,0.0299746018287936,0.0319035741876674,0.00770641448732978,-0.0030260615905271,0.028736902333369,-0.0559050537119252,-0.0387647712639883,0.0153566998439876,0.0390457945992448,0.043261262561783,0.0380436555629826,0.0486375049447145,0.0236504485115352,0.038708446388424,0.0417741568110992,0.00604084102998348,0.0570028776088891,0.0226223723839363,0.0298142702289581,-0.033463718856964,0.000260676615158273,0.0561246648565858,0.00914877825111549,-0.00866592324449011,0.108449188746822,-0.0117480394862133,0.0238107565007626,0.00394163340679432,-0.0332055069109649,-0.0182780071979785
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000117!1.28e-10!23;CL:0000337!1.28e-10!23;CL:0000540!3.72e-08!33;CL:0000047!3.72e-08!33;CL:0000031!3.72e-08!33;CL:0000404!3.72e-08!33
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002346!7.69e-19!64;UBERON:0003075!7.69e-19!64;UBERON:0007284!7.69e-19!64;UBERON:0003056!1.30e-17!49;UBERON:0000073!2.53e-17!54;UBERON:0001049!4.52e-17!52;UBERON:0005068!4.52e-17!52;UBERON:0006241!4.52e-17!52;UBERON:0007135!4.52e-17!52;UBERON:0010371!8.19e-16!73;UBERON:0010314!3.22e-15!92;UBERON:0003080!4.07e-15!40;UBERON:0000955!5.47e-15!47;UBERON:0006238!5.47e-15!47;UBERON:0001017!1.27e-14!73;UBERON:0002780!1.39e-14!39;UBERON:0001890!1.39e-14!39;UBERON:0006240!1.39e-14!39;UBERON:0002616!1.65e-14!46;UBERON:0001016!1.81e-13!75;UBERON:0004121!2.16e-13!95;UBERON:0000924!2.16e-13!95;UBERON:0006601!2.16e-13!95;UBERON:0002020!4.42e-13!34;UBERON:0003528!4.54e-11!29;UBERON:0002791!4.54e-11!29;UBERON:0001893!4.54e-11!29;UBERON:0000956!6.29e-08!21;UBERON:0001869!6.29e-08!21;UBERON:0000203!6.29e-08!21
}}
}}

Revision as of 19:15, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr14:66211853..66211911,-p1@Elp3
Mm9::chr4:106351479..106351521,-p1@Ttc4
Mm9::chr4:56815137..56815194,-p1@Ikbkap


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.28e-1023
neuroblast (sensu Vertebrata)1.28e-1023
neuron3.72e-0833
neuronal stem cell3.72e-0833
neuroblast3.72e-0833
electrically signaling cell3.72e-0833

Uber Anatomy
Ontology termp-valuen
neurectoderm7.69e-1964
neural plate7.69e-1964
presumptive neural plate7.69e-1964
pre-chordal neural plate1.30e-1749
regional part of nervous system2.53e-1754
neural tube4.52e-1752
neural rod4.52e-1752
future spinal cord4.52e-1752
neural keel4.52e-1752
ecto-epithelium8.19e-1673
structure with developmental contribution from neural crest3.22e-1592
anterior neural tube4.07e-1540
brain5.47e-1547
future brain5.47e-1547
central nervous system1.27e-1473
regional part of forebrain1.39e-1439
forebrain1.39e-1439
future forebrain1.39e-1439
regional part of brain1.65e-1446
nervous system1.81e-1375
ectoderm-derived structure2.16e-1395
ectoderm2.16e-1395
presumptive ectoderm2.16e-1395
gray matter4.42e-1334
brain grey matter4.54e-1129
regional part of telencephalon4.54e-1129
telencephalon4.54e-1129
cerebral cortex6.29e-0821
cerebral hemisphere6.29e-0821
pallium6.29e-0821


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:2929&oldid=2155209"