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MCL coexpression mm9:2783: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0010314!2.20e-22!92;UBERON:0001017!9.49e-15!73;UBERON:0004121!1.46e-14!95;UBERON:0000924!1.46e-14!95;UBERON:0006601!1.46e-14!95;UBERON:0001016!1.65e-14!75;UBERON:0002346!2.10e-14!64;UBERON:0003075!2.10e-14!64;UBERON:0007284!2.10e-14!64;UBERON:0003056!1.18e-12!49;UBERON:0010371!4.03e-12!73;UBERON:0000955!6.19e-12!47;UBERON:0006238!6.19e-12!47;UBERON:0002616!2.27e-11!46;UBERON:0000073!4.03e-11!54;UBERON:0002780!4.31e-11!39;UBERON:0001890!4.31e-11!39;UBERON:0006240!4.31e-11!39;UBERON:0003080!4.81e-11!40;UBERON:0001049!5.77e-11!52;UBERON:0005068!5.77e-11!52;UBERON:0006241!5.77e-11!52;UBERON:0007135!5.77e-11!52;UBERON:0004111!2.06e-09!122;UBERON:0000025!6.43e-09!114;UBERON:0002021!2.02e-07!10;UBERON:0000411!2.02e-07!10;UBERON:0001950!2.02e-07!10;UBERON:0000468!6.07e-07!333
}}
}}

Revision as of 19:01, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:39506841..39506848,+p7@Etv1
Mm9::chr12:39506873..39506913,+p1@Etv1
Mm9::chr12:39594611..39594626,+p@chr12:39594611..39594626
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
structure with developmental contribution from neural crest2.20e-2292
central nervous system9.49e-1573
ectoderm-derived structure1.46e-1495
ectoderm1.46e-1495
presumptive ectoderm1.46e-1495
nervous system1.65e-1475
neurectoderm2.10e-1464
neural plate2.10e-1464
presumptive neural plate2.10e-1464
pre-chordal neural plate1.18e-1249
ecto-epithelium4.03e-1273
brain6.19e-1247
future brain6.19e-1247
regional part of brain2.27e-1146
regional part of nervous system4.03e-1154
regional part of forebrain4.31e-1139
forebrain4.31e-1139
future forebrain4.31e-1139
anterior neural tube4.81e-1140
neural tube5.77e-1152
neural rod5.77e-1152
future spinal cord5.77e-1152
neural keel5.77e-1152
anatomical conduit2.06e-09122
tube6.43e-09114
occipital lobe2.02e-0710
visual cortex2.02e-0710
neocortex2.02e-0710
multi-cellular organism6.07e-07333


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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