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|coexpression_dpi_cluster_scores_median=0.235226759826756,0,0,0,0,0.0965629555749047,0.0911788108631387,0,0,0,0,0,0,0,0.062432954297476,0,0,0,0,0,0.166466236071921,0,0,0,0,0,0,0,0,0,0.0434877098916977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0431240519609854,0,0.0284498392435444,0,0,0,0,0,0,0,0.240313045995953,0.092202461586495,0,0,0,0,0,0,0.0569048698027435,0,0,0,0,0.054561543345514,0.189837656856989,0.154723820694495,0.24460708586725,0,0.413961641748644,0.533585047083531,0.373384414880407,0.663115445536321,0.657539297434113,0.734120336103095,0.237981199454182,0.204349628102662,0.359328950614534,0.338160423388235,0.290518816978796,0.31917600204287,0,0,0.274082878733269,0.309598407182041,0.225301871178984,0.831897848927622,0.801443652948655,0.800854893360875,0.336795734338535,0,0,0,0.212793857154164,0,0,0,0,0,0,0.504564612190348,0,0.278574973191572,0.154912135417404,0.342881809208389,0.308458710718639,0.279743541756844,0.30186216259022,0.288133580180653,0,0,0,0.0651189800845078,0,0,0,0.500447385247731,0.362222008439255,0,0,0,0,0.356405712032311,0.345812834677552,0.273088265317754,0.17941127145157,0.0957393479823483,0.595264091848745,0.449873790554719,0.0210591418683525,0,0,0.318731165299228,0.2771595238184,0.391130361939049,0.513624121616578,0.632100405278148,0.781713968911514,0.779470253081398,0.743383807426021,0.711687386996755,0,0.10726833862762,0.100667280964444,0,0,0.120200172919135,0.0812688455295622,0,0,0,0,0.25929134656181,0.334440716491798,0.485552821023364,0.423084591891462,0.426622584961527,0.499900768754987,0.536513236912633,0.457182614932553,0.437996458440954,0.592289189098375,0.495581492582984,0.402886731139061,0.331231133453368,0.179970797219254,0.269860264917005,0.689775029403477,0.469529291232108,0,0,0,0.0453470647143469,0,0,0,0.0378146482960409,0,0.0157683696989603,0.0486868322374133,0.0394017081901728,0,0,0,0,0,0.0234910315133595,0,0,0,0.0432236120246624,0.0973785717588737,0.0298971899647678,0.167611545958962,0.0731640704872308,0.921868603901038,0.226002150769665,0.336554168646818,0.325181764778332,0.316777019253745,0.514712409409207,0.405138286675742,0.613219607299753,0.723534493647321,0.674032133218031,1.38455615213926,0.739013611293025,0.983944666990294,0.874930246278989,0.775382908600017,0.861301409332028,0,0.0376806553706894,0.0327833179115153,0.0340456146751302,0.045779009027853,0,0,0.019496163578598,0.0317858514275138,0.043440458408578,0,0,0,0,0,0,0,0,0.467777374588622,0.439044312363253,0,0.0977676536600382,0.059546782971018,0,0.0847275925579778,0.0465301846457956,0,0.054126280606808,0,0,0,0,0,0,0,0,0,0.31398946287023,0.197531454999281,0.107018899878872,0.0561855000898185,0.260385353017406,0.278778877868351,0.278790247153346,0.339094580369551,0.166003868525548,0,0,0.368675995933936,0.133577925442038,0.0528318955547673,0.0421696201982708,0.230483875976734,0.274946426260665,0.260725940132822,0.473505943339038,0,0,0,0,0,0.037447345818524,0,0,0,0.588440654787126,0,0,0,0,0,0,0,0,0,0,0,0.0401904713554668,0,0,0,0.054943952156948,0.13457259800403,0.050487679316216,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196699873644339,0.148047262367312,0.156196241170702,0,0,0.161464196262218,0.0413955590367985,0.0906015960884875,0.145749265693823,0.200313569576141,0.0980190734489225,0.224570417791558,0.290674067921189,0.357840172284299,0.249048427323574,0.235032483595276,0.180768210719057,0.171443809206049,0.212433815656951,0.219456453609925,0.237147796056226,0.214579344970772,0.325975237476737,0.084586381933092,0.179413081493513,0.208615626048489,0.14986111676545,0.156567915037224,0.113395103429383,0.275859125630462,0.251611094145607,0.128987329753943,0.227762701970225,0.265809426958642,0.236038963822174,0.142510765959715,0.259501143696576,0.321491210143674,0.215606646836597,0.238671808696655,0.074491100723522,0.285472027502138,0.244688881372748,0.278430659321311,0.12898833846516,0.251058770419829,0.0760168881589905,0.102745693585021,0.00403967838795605
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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0010314!3.59e-18!92;UBERON:0000025!7.73e-16!114;UBERON:0004111!6.95e-14!122;UBERON:0002107!6.95e-14!22;UBERON:0007499!6.95e-14!22;UBERON:0006925!6.95e-14!22;UBERON:0009497!6.95e-14!22;UBERON:0000015!6.95e-14!22;UBERON:0002423!6.95e-14!22;UBERON:0006235!6.95e-14!22;UBERON:0008835!6.95e-14!22;UBERON:0003894!6.95e-14!22;UBERON:0004161!6.95e-14!22;UBERON:0008836!6.95e-14!22;UBERON:0003914!5.25e-13!47;UBERON:0009854!9.25e-13!23;UBERON:0009856!9.25e-13!23;UBERON:0002365!8.13e-11!25;UBERON:0002330!8.13e-11!25;UBERON:0002346!1.42e-10!64;UBERON:0003075!1.42e-10!64;UBERON:0007284!1.42e-10!64;UBERON:0003056!1.90e-08!49;UBERON:0010371!1.93e-08!73;UBERON:0000073!1.16e-07!54;UBERON:0000483!2.74e-07!174;UBERON:0001049!6.66e-07!52;UBERON:0005068!6.66e-07!52;UBERON:0006241!6.66e-07!52;UBERON:0007135!6.66e-07!52;UBERON:0000119!7.37e-07!176
}}
}}

Revision as of 18:15, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr1:191994057..191994091,-p@chr1:191994057..191994091
-
Mm9::chr1:191994160..191994180,+p1@ENSMUST00000110279
p1@uc007ebd.1
Mm9::chr1:191994220..191994237,+p2@ENSMUST00000110279
p2@uc007ebd.1
Mm9::chr1:191994550..191994623,-p1@Prox1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
structure with developmental contribution from neural crest3.59e-1892
tube7.73e-16114
anatomical conduit6.95e-14122
liver6.95e-1422
epithelial sac6.95e-1422
digestive gland6.95e-1422
epithelium of foregut-midgut junction6.95e-1422
anatomical boundary6.95e-1422
hepatobiliary system6.95e-1422
foregut-midgut junction6.95e-1422
hepatic diverticulum6.95e-1422
liver primordium6.95e-1422
septum transversum6.95e-1422
liver bud6.95e-1422
epithelial tube5.25e-1347
digestive tract diverticulum9.25e-1323
sac9.25e-1323
exocrine gland8.13e-1125
exocrine system8.13e-1125
neurectoderm1.42e-1064
neural plate1.42e-1064
presumptive neural plate1.42e-1064
pre-chordal neural plate1.90e-0849
ecto-epithelium1.93e-0873
regional part of nervous system1.16e-0754
epithelium2.74e-07174
neural tube6.66e-0752
neural rod6.66e-0752
future spinal cord6.66e-0752
neural keel6.66e-0752
cell layer7.37e-07176


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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