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MCL coexpression mm9:2202: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000073!3.79e-11!54;UBERON:0001049!3.50e-10!52;UBERON:0005068!3.50e-10!52;UBERON:0006241!3.50e-10!52;UBERON:0007135!3.50e-10!52;UBERON:0000955!1.76e-09!47;UBERON:0006238!1.76e-09!47;UBERON:0003056!3.70e-09!49;UBERON:0002616!4.08e-09!46;UBERON:0002346!5.31e-09!64;UBERON:0003075!5.31e-09!64;UBERON:0007284!5.31e-09!64;UBERON:0003080!6.71e-09!40;UBERON:0010371!1.28e-08!73;UBERON:0002780!2.14e-08!39;UBERON:0001890!2.14e-08!39;UBERON:0006240!2.14e-08!39;UBERON:0004121!1.44e-07!95;UBERON:0000924!1.44e-07!95;UBERON:0006601!1.44e-07!95;UBERON:0001017!2.15e-07!73;UBERON:0002390!2.63e-07!45;UBERON:0003061!2.63e-07!45;UBERON:0002193!7.19e-07!48;UBERON:0002405!7.19e-07!48
}}
}}

Revision as of 18:05, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr17:31194631..31194644,+p2@Abcg1
Mm9::chr17:31194649..31194658,+p4@Abcg1
Mm9::chr17:31194664..31194679,+p1@Abcg1
Mm9::chr17:31194685..31194694,+p3@Abcg1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
regional part of nervous system3.79e-1154
neural tube3.50e-1052
neural rod3.50e-1052
future spinal cord3.50e-1052
neural keel3.50e-1052
brain1.76e-0947
future brain1.76e-0947
pre-chordal neural plate3.70e-0949
regional part of brain4.08e-0946
neurectoderm5.31e-0964
neural plate5.31e-0964
presumptive neural plate5.31e-0964
anterior neural tube6.71e-0940
ecto-epithelium1.28e-0873
regional part of forebrain2.14e-0839
forebrain2.14e-0839
future forebrain2.14e-0839
ectoderm-derived structure1.44e-0795
ectoderm1.44e-0795
presumptive ectoderm1.44e-0795
central nervous system2.15e-0773
hematopoietic system2.63e-0745
blood island2.63e-0745
hemolymphoid system7.19e-0748
immune system7.19e-0748


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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