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|gostat_on_MCL_coexpression=GO:0016898;oxidoreductase activity, acting on the CH-OH group of donors, cytochrome as acceptor;0.0051498383827316;52815!GO:0008720;D-lactate dehydrogenase activity;0.0051498383827316;52815!GO:0004458;D-lactate dehydrogenase (cytochrome) activity;0.0051498383827316;52815!GO:0001891;phagocytic cup;0.00772433434609092;18826!GO:0004457;lactate dehydrogenase activity;0.0154461295096576;52815!GO:0051017;actin filament bundle formation;0.0334519460528467;18826!GO:0005884;actin filament;0.0370630103427486;18826!GO:0051015;actin filament binding;0.0370630103427486;18826!GO:0001726;ruffle;0.0370630103427486;18826!GO:0006754;ATP biosynthetic process;0.0370630103427486;52815!GO:0006753;nucleoside phosphate metabolic process;0.0370630103427486;52815!GO:0046034;ATP metabolic process;0.0370630103427486;52815!GO:0007015;actin filament organization;0.0370630103427486;18826!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.0370630103427486;52815!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.0370630103427486;52815!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.0370630103427486;52815!GO:0009142;nucleoside triphosphate biosynthetic process;0.0370630103427486;52815!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.0370630103427486;52815!GO:0009199;ribonucleoside triphosphate metabolic process;0.0370630103427486;52815!GO:0009144;purine nucleoside triphosphate metabolic process;0.0370630103427486;52815!GO:0006752;group transfer coenzyme metabolic process;0.0370630103427486;52815!GO:0009141;nucleoside triphosphate metabolic process;0.0370630103427486;52815!GO:0009152;purine ribonucleotide biosynthetic process;0.0370630103427486;52815!GO:0050660;FAD binding;0.0370630103427486;52815!GO:0009260;ribonucleotide biosynthetic process;0.0370630103427486;52815!GO:0009150;purine ribonucleotide metabolic process;0.0370630103427486;52815!GO:0006164;purine nucleotide biosynthetic process;0.0370630103427486;52815!GO:0009259;ribonucleotide metabolic process;0.0384779555486205;52815!GO:0006163;purine nucleotide metabolic process;0.0389781624273876;52815!GO:0031252;leading edge;0.0389781624273876;18826!GO:0009108;coenzyme biosynthetic process;0.0411792677516855;52815!GO:0051188;cofactor biosynthetic process;0.0461077196418848;52815!
|gostat_on_MCL_coexpression=GO:0016898;oxidoreductase activity, acting on the CH-OH group of donors, cytochrome as acceptor;0.0051498383827316;52815!GO:0008720;D-lactate dehydrogenase activity;0.0051498383827316;52815!GO:0004458;D-lactate dehydrogenase (cytochrome) activity;0.0051498383827316;52815!GO:0001891;phagocytic cup;0.00772433434609092;18826!GO:0004457;lactate dehydrogenase activity;0.0154461295096576;52815!GO:0051017;actin filament bundle formation;0.0334519460528467;18826!GO:0005884;actin filament;0.0370630103427486;18826!GO:0051015;actin filament binding;0.0370630103427486;18826!GO:0001726;ruffle;0.0370630103427486;18826!GO:0006754;ATP biosynthetic process;0.0370630103427486;52815!GO:0006753;nucleoside phosphate metabolic process;0.0370630103427486;52815!GO:0046034;ATP metabolic process;0.0370630103427486;52815!GO:0007015;actin filament organization;0.0370630103427486;18826!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.0370630103427486;52815!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.0370630103427486;52815!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.0370630103427486;52815!GO:0009142;nucleoside triphosphate biosynthetic process;0.0370630103427486;52815!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.0370630103427486;52815!GO:0009199;ribonucleoside triphosphate metabolic process;0.0370630103427486;52815!GO:0009144;purine nucleoside triphosphate metabolic process;0.0370630103427486;52815!GO:0006752;group transfer coenzyme metabolic process;0.0370630103427486;52815!GO:0009141;nucleoside triphosphate metabolic process;0.0370630103427486;52815!GO:0009152;purine ribonucleotide biosynthetic process;0.0370630103427486;52815!GO:0050660;FAD binding;0.0370630103427486;52815!GO:0009260;ribonucleotide biosynthetic process;0.0370630103427486;52815!GO:0009150;purine ribonucleotide metabolic process;0.0370630103427486;52815!GO:0006164;purine nucleotide biosynthetic process;0.0370630103427486;52815!GO:0009259;ribonucleotide metabolic process;0.0384779555486205;52815!GO:0006163;purine nucleotide metabolic process;0.0389781624273876;52815!GO:0031252;leading edge;0.0389781624273876;18826!GO:0009108;coenzyme biosynthetic process;0.0411792677516855;52815!GO:0051188;cofactor biosynthetic process;0.0461077196418848;52815!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005177!8.89e-10!79;UBERON:0002100!2.67e-09!90;UBERON:0000466!5.25e-09!79;UBERON:0007023!1.38e-08!51;UBERON:0004111!2.07e-08!122;UBERON:0002365!2.64e-07!25;UBERON:0002330!2.64e-07!25;UBERON:0000025!4.71e-07!114
}}
}}

Revision as of 17:57, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr14:75531033..75531048,+p16@Lcp1
Mm9::chr16:43235969..43235989,+p20@Zbtb20
Mm9::chr16:43236037..43236050,+p35@Zbtb20
Mm9::chr8:114154225..114154244,-p1@Ldhd


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0016898oxidoreductase activity, acting on the CH-OH group of donors, cytochrome as acceptor0.0051498383827316
GO:0008720D-lactate dehydrogenase activity0.0051498383827316
GO:0004458D-lactate dehydrogenase (cytochrome) activity0.0051498383827316
GO:0001891phagocytic cup0.00772433434609092
GO:0004457lactate dehydrogenase activity0.0154461295096576
GO:0051017actin filament bundle formation0.0334519460528467
GO:0005884actin filament0.0370630103427486
GO:0051015actin filament binding0.0370630103427486
GO:0001726ruffle0.0370630103427486
GO:0006754ATP biosynthetic process0.0370630103427486
GO:0006753nucleoside phosphate metabolic process0.0370630103427486
GO:0046034ATP metabolic process0.0370630103427486
GO:0007015actin filament organization0.0370630103427486
GO:0009206purine ribonucleoside triphosphate biosynthetic process0.0370630103427486
GO:0009201ribonucleoside triphosphate biosynthetic process0.0370630103427486
GO:0009145purine nucleoside triphosphate biosynthetic process0.0370630103427486
GO:0009142nucleoside triphosphate biosynthetic process0.0370630103427486
GO:0009205purine ribonucleoside triphosphate metabolic process0.0370630103427486
GO:0009199ribonucleoside triphosphate metabolic process0.0370630103427486
GO:0009144purine nucleoside triphosphate metabolic process0.0370630103427486
GO:0006752group transfer coenzyme metabolic process0.0370630103427486
GO:0009141nucleoside triphosphate metabolic process0.0370630103427486
GO:0009152purine ribonucleotide biosynthetic process0.0370630103427486
GO:0050660FAD binding0.0370630103427486
GO:0009260ribonucleotide biosynthetic process0.0370630103427486
GO:0009150purine ribonucleotide metabolic process0.0370630103427486
GO:0006164purine nucleotide biosynthetic process0.0370630103427486
GO:0009259ribonucleotide metabolic process0.0384779555486205
GO:0006163purine nucleotide metabolic process0.0389781624273876
GO:0031252leading edge0.0389781624273876
GO:0009108coenzyme biosynthetic process0.0411792677516855
GO:0051188cofactor biosynthetic process0.0461077196418848



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
trunk region element8.89e-1079
trunk2.67e-0990
immaterial anatomical entity5.25e-0979
adult organism1.38e-0851
anatomical conduit2.07e-08122
exocrine gland2.64e-0725
exocrine system2.64e-0725
tube4.71e-07114


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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