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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0.0288882413812148,0.153941996340868,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313676059294704,0,0,0,0,0,0,0,0.0377777541586983,0.0488073900885761,0.0434877098916977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0189014495992595,0,0,0,0,0,0,0,0.0801664182159629,0.0386902153001233,0,0.176782520138305,0.124721544820624,0.224709479815194,0,0,0,0,0,0,0.0706022940921515,0,0.0274990668782,0,0.0384464489813198,0.0940456956549411,0.14654722243275,0.162556183304497,0,0.262775500182807,0.248711350831692,0.24749028480297,0.223318388327051,0.189271744910599,0.182104477852721,0.361860514254001,0,0.22150675447437,0.133916498936968,0.144870538218689,0.297192316448445,0,0.0158196551188907,0,0,0,0,0,0,0.264181617703996,0,0,0,0,0,0,0,0,0,0,0.177278761328052,0,0.140348896228953,0.0347388317801137,0,0,0.06097065795378,0.0458646709052479,0.0743913690609267,0,0.0293267487845199,0,0,0,0,0.168796881766918,1.2840131791918,1.24717587118394,0.113258535777885,0,0,0,0.201979015107649,0.451786805560604,0.571789212974101,0.633382544014738,0.714330206408164,0.317836824666907,0.351369573982277,0,0.0737106338258954,0,0.0165958895339888,0,0,0,0.0609639314262262,0,0.0371146282733351,0.0910915455917895,0.0499616976077144,0,0,0,0,0,0,0,0,0,0,0,0,0.0457501310086346,0,0,0.0780086007519514,0.082592674552347,0,0.103212884397651,0.0235407623675509,0.033080906512311,0.0660154575426048,0.0338533374824575,0,0.0430998257964463,0,0.660384370401697,0.0710938680493486,0,0.0325063229415207,0.047720637118597,0.197780545732055,0.447341291671094,0.418452908810665,0.342010172732651,0.366199961346164,0,0.19961803372627,0.273109589838008,0.360036160107572,0.304095483770298,0.139241831090348,0.120504810807486,0.203420156066496,0,0,0,0,0,0.00559271144672095,0,0,0,0,0,0.0625274818480945,0,0,0,0,0.049257116002996,0.054906696497384,0,0,0,0.0777153464663561,0,0,0,0,0.0368139433955263,0,0.0655666358230307,0.0296950927596762,0,0.091469243494325,0,0,0.143594936745884,0.130567239465391,0.167240466750389,0.0271413450555241,0,0.0394521528874482,0,0,0,0,0.231866796898933,0.111161792300979,0,0,1.02200907161712,1.03387791863141,1.15572355644096,0.481281919153013,0.554020428330563,0.562825083112408,1.25521212000917,1.37318350849695,1.37632622145194,1.0691159850449,0.0542622456065255,0,0,0,0,0.166012069309488,0.057359448163414,0.0752056703916167,0,0.200121275907959,0.184933733288939,0.185987593418638,0.116878016827302,0.224138793426632,0,0,0.342792944516679,0.070055070239307,0.0572875799965257,0.0421696201982708,0.0416860488756511,0.116270959815786,0.193845921508111,0.160984768121272,0,0,0.077639537193663,0,0,0,0.0244872863598586,0.0330027737817202,0,0.132980393264954,0,0,0,0,0,0,0,0,0,0,0.138335250703313,0.378193236433456,0.459008166659794,0.345453730384552,0.355742547956528,0.303272105222752,0.409778714535038,0.116655990069707,0.162028540023894,0.670897837137063,0,0,0,0,0,0,0,0.0579336718663056,0.0629956915955694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.304728196826736,0,0,0,0.0383547285828163,0,0,0,0,0.758775464467768,0.679071061454889,0.51072496385796,0.654719158830401,0.286454964896855,0.514040340140897,0.425905624201957,0.587549142734338,0.481540585963464,0.52111754717041,0,0.145825435924841,0.127694003742845,0.17208118264908,0.122281595480239,0.187689909581142,0.079857789288847,0,0.168103334988355,0.17765030293269,0.211861015478982,0.226762927648423,0.265471974098906,0.169401016664449,0.204883445828931,0.170208242887946,0.18195093890136,0.163657587285562,0.130532869018156,0.135455788658115,0.226790206858766,0.170936141392196,0.169342968499384,0.191573477079952,0.19175208935726,0.190168443418861,0.189990830607665,0.222765359283873,0.206741431078382,0.133759105094642,0.0661146398223975,0.112441925220423,0.204343226098226,0.147767889464584,0.195038427344882,0.175981558593572,0.166685587652774,0.26939249630118,0.161399662038218,0.0865703124974023,0.197472739556388
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|gostat_on_MCL_coexpression=GO:0007638;mechanosensory behavior;0.0455778022205458;14009!
|gostat_on_MCL_coexpression=GO:0007638;mechanosensory behavior;0.0455778022205458;14009!
|ontology_enrichment_celltype=CL:0000540!1.43e-08!33;CL:0000047!1.43e-08!33;CL:0000031!1.43e-08!33;CL:0000404!1.43e-08!33;CL:0000107!4.36e-08!9
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001017!1.10e-18!73;UBERON:0001016!6.28e-18!75;UBERON:0004121!1.78e-13!95;UBERON:0000924!1.78e-13!95;UBERON:0006601!1.78e-13!95;UBERON:0000073!3.28e-13!54;UBERON:0001049!4.90e-12!52;UBERON:0005068!4.90e-12!52;UBERON:0006241!4.90e-12!52;UBERON:0007135!4.90e-12!52;UBERON:0002346!9.55e-12!64;UBERON:0003075!9.55e-12!64;UBERON:0007284!9.55e-12!64;UBERON:0000955!1.31e-11!47;UBERON:0006238!1.31e-11!47;UBERON:0002616!5.70e-11!46;UBERON:0003080!7.10e-10!40;UBERON:0002780!1.64e-09!39;UBERON:0001890!1.64e-09!39;UBERON:0006240!1.64e-09!39;UBERON:0010314!1.11e-08!92;UBERON:0010371!1.19e-08!73;UBERON:0002020!2.52e-08!34;UBERON:0002410!4.36e-08!9;UBERON:0002021!5.95e-08!10;UBERON:0000411!5.95e-08!10;UBERON:0001950!5.95e-08!10;UBERON:0003056!8.15e-08!49;UBERON:0003528!1.62e-07!29;UBERON:0002791!1.62e-07!29;UBERON:0001893!1.62e-07!29
}}
}}

Revision as of 17:38, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:79460208..79460246,+p3@Abca7
Mm9::chr12:39510090..39510114,+p6@Etv1
Mm9::chr12:39510206..39510249,+p3@Etv1
Mm9::chr12:39510954..39510998,+p@chr12:39510954..39510998
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0007638mechanosensory behavior0.0455778022205458



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
neuron1.43e-0833
neuronal stem cell1.43e-0833
neuroblast1.43e-0833
electrically signaling cell1.43e-0833
autonomic neuron4.36e-089

Uber Anatomy
Ontology termp-valuen
central nervous system1.10e-1873
nervous system6.28e-1875
ectoderm-derived structure1.78e-1395
ectoderm1.78e-1395
presumptive ectoderm1.78e-1395
regional part of nervous system3.28e-1354
neural tube4.90e-1252
neural rod4.90e-1252
future spinal cord4.90e-1252
neural keel4.90e-1252
neurectoderm9.55e-1264
neural plate9.55e-1264
presumptive neural plate9.55e-1264
brain1.31e-1147
future brain1.31e-1147
regional part of brain5.70e-1146
anterior neural tube7.10e-1040
regional part of forebrain1.64e-0939
forebrain1.64e-0939
future forebrain1.64e-0939
structure with developmental contribution from neural crest1.11e-0892
ecto-epithelium1.19e-0873
gray matter2.52e-0834
autonomic nervous system4.36e-089
occipital lobe5.95e-0810
visual cortex5.95e-0810
neocortex5.95e-0810
pre-chordal neural plate8.15e-0849
brain grey matter1.62e-0729
regional part of telencephalon1.62e-0729
telencephalon1.62e-0729


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}