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|gostat_on_MCL_coexpression=GO:0019695;choline metabolic process;0.0098589613379595;320981!GO:0042439;ethanolamine and derivative metabolic process;0.0098589613379595;320981!GO:0008889;glycerophosphodiester phosphodiesterase activity;0.0098589613379595;320981!GO:0001573;ganglioside metabolic process;0.0098589613379595;320910!GO:0006629;lipid metabolic process;0.0098589613379595;320910,320981!GO:0006687;glycosphingolipid metabolic process;0.0098589613379595;320910!GO:0006664;glycolipid metabolic process;0.0135186383516479;320910!GO:0006672;ceramide metabolic process;0.0164248485915314;320910!GO:0046519;sphingoid metabolic process;0.0164248485915314;320910!GO:0008305;integrin complex;0.0200990548039927;320910!GO:0006665;sphingolipid metabolic process;0.0225661800323921;320910!GO:0007160;cell-matrix adhesion;0.0265739732497567;320910!GO:0008081;phosphoric diester hydrolase activity;0.0265739732497567;320981!GO:0031589;cell-substrate adhesion;0.0265739732497567;320910!GO:0043235;receptor complex;0.0265739732497567;320910!GO:0006576;biogenic amine metabolic process;0.0265739732497567;320981!GO:0006575;amino acid derivative metabolic process;0.0288883626643423;320981!GO:0007229;integrin-mediated signaling pathway;0.0288883626643423;320910!GO:0016042;lipid catabolic process;0.0288883626643423;320981!GO:0005886;plasma membrane;0.0289955740435956;320910,320981!GO:0006643;membrane lipid metabolic process;0.0423700426692558;320910!GO:0009117;nucleotide metabolic process;0.0484393834823058;320981!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0496433578567692;320981!
|gostat_on_MCL_coexpression=GO:0019695;choline metabolic process;0.0098589613379595;320981!GO:0042439;ethanolamine and derivative metabolic process;0.0098589613379595;320981!GO:0008889;glycerophosphodiester phosphodiesterase activity;0.0098589613379595;320981!GO:0001573;ganglioside metabolic process;0.0098589613379595;320910!GO:0006629;lipid metabolic process;0.0098589613379595;320910,320981!GO:0006687;glycosphingolipid metabolic process;0.0098589613379595;320910!GO:0006664;glycolipid metabolic process;0.0135186383516479;320910!GO:0006672;ceramide metabolic process;0.0164248485915314;320910!GO:0046519;sphingoid metabolic process;0.0164248485915314;320910!GO:0008305;integrin complex;0.0200990548039927;320910!GO:0006665;sphingolipid metabolic process;0.0225661800323921;320910!GO:0007160;cell-matrix adhesion;0.0265739732497567;320910!GO:0008081;phosphoric diester hydrolase activity;0.0265739732497567;320981!GO:0031589;cell-substrate adhesion;0.0265739732497567;320910!GO:0043235;receptor complex;0.0265739732497567;320910!GO:0006576;biogenic amine metabolic process;0.0265739732497567;320981!GO:0006575;amino acid derivative metabolic process;0.0288883626643423;320981!GO:0007229;integrin-mediated signaling pathway;0.0288883626643423;320910!GO:0016042;lipid catabolic process;0.0288883626643423;320981!GO:0005886;plasma membrane;0.0289955740435956;320910,320981!GO:0006643;membrane lipid metabolic process;0.0423700426692558;320910!GO:0009117;nucleotide metabolic process;0.0484393834823058;320981!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0496433578567692;320981!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000025!4.60e-10!114;UBERON:0003103!2.66e-09!43;UBERON:0004111!1.08e-08!122;UBERON:0010314!1.81e-08!92;UBERON:0002021!1.69e-07!10;UBERON:0000411!1.69e-07!10;UBERON:0001950!1.69e-07!10;UBERON:0007100!2.59e-07!18;UBERON:0000948!2.59e-07!18;UBERON:0005498!2.59e-07!18;UBERON:0004140!2.59e-07!18;UBERON:0009881!2.59e-07!18;UBERON:0004141!2.59e-07!18;UBERON:0003084!2.59e-07!18;UBERON:0007005!2.59e-07!18;UBERON:0004139!2.59e-07!18;UBERON:0004291!2.59e-07!18
}}
}}

Revision as of 17:10, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:120476799..120476810,-p12@Itgb8
Mm9::chr8:48072237..48072245,+p3@Enpp6
Mm9::chr8:48072252..48072264,+p2@Enpp6
Mm9::chr8:48072267..48072316,+p1@Enpp6
Mm9::chr8:48180161..48180170,+p@chr8:48180161..48180170
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0019695choline metabolic process0.0098589613379595
GO:0042439ethanolamine and derivative metabolic process0.0098589613379595
GO:0008889glycerophosphodiester phosphodiesterase activity0.0098589613379595
GO:0001573ganglioside metabolic process0.0098589613379595
GO:0006629lipid metabolic process0.0098589613379595
GO:0006687glycosphingolipid metabolic process0.0098589613379595
GO:0006664glycolipid metabolic process0.0135186383516479
GO:0006672ceramide metabolic process0.0164248485915314
GO:0046519sphingoid metabolic process0.0164248485915314
GO:0008305integrin complex0.0200990548039927
GO:0006665sphingolipid metabolic process0.0225661800323921
GO:0007160cell-matrix adhesion0.0265739732497567
GO:0008081phosphoric diester hydrolase activity0.0265739732497567
GO:0031589cell-substrate adhesion0.0265739732497567
GO:0043235receptor complex0.0265739732497567
GO:0006576biogenic amine metabolic process0.0265739732497567
GO:0006575amino acid derivative metabolic process0.0288883626643423
GO:0007229integrin-mediated signaling pathway0.0288883626643423
GO:0016042lipid catabolic process0.0288883626643423
GO:0005886plasma membrane0.0289955740435956
GO:0006643membrane lipid metabolic process0.0423700426692558
GO:0009117nucleotide metabolic process0.0484393834823058
GO:0055086nucleobase, nucleoside and nucleotide metabolic process0.0496433578567692



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
tube4.60e-10114
compound organ2.66e-0943
anatomical conduit1.08e-08122
structure with developmental contribution from neural crest1.81e-0892
occipital lobe1.69e-0710
visual cortex1.69e-0710
neocortex1.69e-0710
primary circulatory organ2.59e-0718
heart2.59e-0718
primitive heart tube2.59e-0718
primary heart field2.59e-0718
anterior lateral plate mesoderm2.59e-0718
heart tube2.59e-0718
heart primordium2.59e-0718
cardiac mesoderm2.59e-0718
cardiogenic plate2.59e-0718
heart rudiment2.59e-0718


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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