Personal tools

MCL coexpression mm9:1768: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0.571902655016543,-0.0760643312862458,-0.102065137762676,-0.0609740041038556,-0.102065137762676,-0.0415437353122214,-0.0559325517041774,-0.102065137762676,-0.102065137762676,-0.102065137762676,-0.102065137762676,-0.102065137762676,-0.0883388708864462,-0.102065137762676,-0.102065137762676,-0.0860499072560528,-0.102065137762676,-0.102065137762676,-0.102065137762676,-0.102065137762676,-0.010744890955062,-0.0938426071437084,-0.102065137762676,-0.0891741072879408,-0.0565789260384412,-0.102065137762676,-0.102065137762676,-0.0709407033201384,-0.062881320384103,-0.0531557645426072,-0.046914346193792,-0.0593599568601367,-0.102065137762676,-0.102065137762676,-0.0060073569922682,-0.0350280363369471,-0.0179632607340093,-0.102065137762676,-0.102065137762676,-0.102065137762676,-0.102065137762676,-0.102065137762676,-0.102065137762676,0.000741893951281403,0.0159857692193638,-0.0060921044917048,0.129203127088645,-0.014381946165302,-0.00318696107978958,0.0207217880277022,-0.00326793234218685,0.015590353213208,-0.102065137762676,-0.102065137762676,-0.102065137762676,-0.0209768559832056,0.0014338857183094,-0.0048445759110736,-0.015348371096456,0.0431815519926456,-0.0594236899065855,0.0035101015209044,0.0296740832395544,-0.102065137762676,-0.102065137762676,-0.102065137762676,0.0182599821708988,0.0199336610818584,0.0221400953221575,-0.0164512334558455,0.00743226299059306,0.0776659305753671,0.0477421898130806,-0.0225661685723228,-0.0500271306837568,0.0111846566966676,-0.102065137762676,-0.0244925671925301,-0.0458765442761789,0.009895551817513,0.015543001498025,-0.0292233466215876,-0.0421447092538921,-0.0632865353748775,-0.0665526810866427,0.142450703313761,0.0639780874668721,0.0387340117694583,-0.0842835845220706,-0.069586351942067,0.0841905941558062,-0.0481427568264816,-0.102065137762676,-0.0384772631992117,-0.102065137762676,-0.0699098125714456,0.00116287862510674,-0.000612890607932798,-0.0520124700370058,-0.0556347612382812,0.48965621930673,0.0083840275275934,0.107718029091888,-0.102065137762676,0.0091444986656738,-0.0216622657609474,0.0384932453446486,-0.0473484589238288,-0.0820642772780028,0.0232940979601269,0.542590359351767,0.441280977626126,0.423665203503369,0.331026241513005,0.438453863821547,0.0393218307827408,-0.0423477946247444,-0.0311242665305094,-0.01359361123111,0.576415006761865,0.0809024328857278,0.153232886604263,-0.102065137762676,0.119730725285354,0.145814252854991,-0.0305816501244217,-0.0922358719847672,-0.102065137762676,-0.102065137762676,-0.0455816617827125,-0.0366216405409936,-0.0173743814078036,-0.0761498022653318,-0.0464092295111421,-0.0856669924875692,-0.0515373750998876,0.971705333721381,0.0731334134310594,-0.0824941442828976,-0.0124565154763236,0.530178263545641,0.598101024812551,0.636585431315993,0.678150028645762,0.462823310436821,0.394216684367341,0.355597068968431,0.134020758051131,0.356956982132297,0.705353919549696,0.915773024170496,0.997218899796683,1.04162736220551,0.890980472910436,0.815955806091386,0.898540913408724,-0.102065137762676,-0.102065137762676,-0.102065137762676,0.194533215599586,0.326355824887245,0.276249477655244,0.393362044807376,0.251766965320905,0.278429287367218,0.130008616943478,0.222848016605371,0.0746868537198965,0.120527766883725,0.0341001461063192,0.0076131323544942,-0.00122535918580119,-0.0408742387217475,-0.0172069589432577,-0.0185537083305578,0.0371073504088755,-0.102065137762676,-0.0816847666841472,0.65159396797346,0.85494977203428,0.674318210132594,0.572800592878949,0.541517915992955,0.478239458007192,0.0486939036785193,0.399418766120642,0.220632069891568,0.27910848011047,0.224845284568274,-0.102065137762676,-0.00453696175966506,-0.0420458092189814,0.512815736953786,0.456142776479678,0.231229392602697,0.345183874898051,0.334884266275265,0.305423242148823,0.0530321523116612,-0.0343387366606587,-0.0054623261053498,-0.0270783368148592,-0.0616271488062152,0.0967850548804662,0.270924076613928,0.0513610454003384,0.0920737150862031,0.0340208791642889,0.0967720816791476,0.0289710237410536,-0.0646184667285475,0.00921411513773284,0.130121099503556,-0.0471056478351875,-0.0784758767012612,-0.0665487336007812,-0.0877331035600562,-0.0678695064721076,-0.0232439827850995,0.642206992873764,0.57164609786013,0.505815054357124,0.403325613951446,0.264779051203569,0.248612623197361,0.130278832259162,0.0226022053989951,0.0881577514435958,0.105541216932747,0.0102303162743494,0.00423680001852368,-0.0296500535926317,-0.102065137762676,-0.102065137762676,-0.102065137762676,-0.0808993087495544,-0.08913232242365,-0.0837723105066628,-0.0029242440987732,0.0178217551502461,-0.054427711385862,0.0700972034766704,-0.0022863566354058,-0.0248077040347433,-0.0204310324248382,-0.0146447147123279,-0.0184299857888176,-0.079795435854697,-0.0514666074805694,-0.0589565197154026,0.0455044482263157,1.20084077530284,1.05898650533119,0.0615126387074297,0.0105100277763054,0.589372957666704,0.494659462402183,0.358539350159922,0.497112451752703,0.442206938600146,0.280764372237683,0.277641348519326,0.165242196273677,0.0626062207975937,-0.102065137762676,-0.102065137762676,-0.040938173955483,0.486305695476276,0.542740660509248,0.634760035236936,0.612837528565459,0.737642453876306,0.716689565581571,0.592135812719028,-0.0503301761806402,0.03846571139258,-0.0674459823195373,-0.0640529638788734,0.29923944669935,0.218071624801048,0.0852800651621647,0.0563773030113199,0.0403406021381492,-0.0725154606864188,-0.102065137762676,0.501772780717979,0.285127998141073,-0.0465247548945279,-0.0810729561175392,-0.0566763917222208,-0.0884295667503664,-0.0501809731368298,-0.102065137762676,-0.0438504207953671,0.741319704087456,0.759958612674668,0.749450197249425,0.726935125188913,0.578782385717686,0.443842806023088,0.313916690938689,0.0110015051078487,0.0454422997691568,-0.0600903551038542,-0.0364958833917072,0.764011452157814,0.911173563259122,0.961470683428639,0.967967910968437,0.958647237546505,1.0262161754063,0.760494264587238,0.528980844356051,0.0771573039979693,0.0333417286635498,-0.0441458597019711,0.557609065317025,0.43239853740697,0.143715025784238,0.180623117289995,0.0310155677973854,-0.0263297730639986,-0.0263854654959935,-0.0701130485389796,-0.0833643148843978,-0.0694218676770275,-0.0865976798211816,-0.072060219983266,-0.0838194367914546,0.0285978967933692,-0.102065137762676,-0.0871401484249384,-0.088585150192278,-0.0523352285516796,-0.0445759029188767,-0.00387950166262622,-0.0482806116933492,-0.066755899475613,-0.102065137762676,-0.102065137762676,-0.0151933103428446,-0.0607412155104749,-0.0271094201837316,-0.0531902209221698,-0.102065137762676,-0.0139922155384822,-0.0696035022526428,-0.0658244993272812,0.0613972270154355,0.405783335505393,0.64509327910936,0.700669435119312,0.458045679497372,0.370590499647045,0.490706068689555,0.527115641693327,0.576000136208419,0.520368597474506,0.505179449405125,0.519569673198701,0.513675435876663,0.515690113509944,0.541759187179901,0.553705069404026,0.565115408742231,0.534705113780024,0.494167909174824,0.493948604992882,0.591819100839963,0.571362698355504,0.533426879894359,0.512056922363361,0.483903280985191,0.505128078683403,0.490449754982124,0.47724389042364,0.508390356654781,0.488218427669255,0.524412287917495,0.525097864085655,0.504431464642188,0.469369697173584,0.609629283554604,0.656738305474059,0.583205659815438,0.402782722252484,0.605607453179975,0.403437844614557,0.304844826661459
|coexpression_dpi_cluster_scores_mean=0.571902655016543,-0.0760643312862458,-0.102065137762676,-0.0609740041038556,-0.102065137762676,-0.0415437353122214,-0.0559325517041774,-0.102065137762676,-0.102065137762676,-0.102065137762676,-0.102065137762676,-0.102065137762676,-0.0883388708864462,-0.102065137762676,-0.102065137762676,-0.0860499072560528,-0.102065137762676,-0.102065137762676,-0.102065137762676,-0.102065137762676,-0.010744890955062,-0.0938426071437084,-0.102065137762676,-0.0891741072879408,-0.0565789260384412,-0.102065137762676,-0.102065137762676,-0.0709407033201384,-0.062881320384103,-0.0531557645426072,-0.046914346193792,-0.0593599568601367,-0.102065137762676,-0.102065137762676,-0.0060073569922682,-0.0350280363369471,-0.0179632607340093,-0.102065137762676,-0.102065137762676,-0.102065137762676,-0.102065137762676,-0.102065137762676,-0.102065137762676,0.000741893951281403,0.0159857692193638,-0.0060921044917048,0.129203127088645,-0.014381946165302,-0.00318696107978958,0.0207217880277022,-0.00326793234218685,0.015590353213208,-0.102065137762676,-0.102065137762676,-0.102065137762676,-0.0209768559832056,0.0014338857183094,-0.0048445759110736,-0.015348371096456,0.0431815519926456,-0.0594236899065855,0.0035101015209044,0.0296740832395544,-0.102065137762676,-0.102065137762676,-0.102065137762676,0.0182599821708988,0.0199336610818584,0.0221400953221575,-0.0164512334558455,0.00743226299059306,0.0776659305753671,0.0477421898130806,-0.0225661685723228,-0.0500271306837568,0.0111846566966676,-0.102065137762676,-0.0244925671925301,-0.0458765442761789,0.009895551817513,0.015543001498025,-0.0292233466215876,-0.0421447092538921,-0.0632865353748775,-0.0665526810866427,0.142450703313761,0.0639780874668721,0.0387340117694583,-0.0842835845220706,-0.069586351942067,0.0841905941558062,-0.0481427568264816,-0.102065137762676,-0.0384772631992117,-0.102065137762676,-0.0699098125714456,0.00116287862510674,-0.000612890607932798,-0.0520124700370058,-0.0556347612382812,0.48965621930673,0.0083840275275934,0.107718029091888,-0.102065137762676,0.0091444986656738,-0.0216622657609474,0.0384932453446486,-0.0473484589238288,-0.0820642772780028,0.0232940979601269,0.542590359351767,0.441280977626126,0.423665203503369,0.331026241513005,0.438453863821547,0.0393218307827408,-0.0423477946247444,-0.0311242665305094,-0.01359361123111,0.576415006761865,0.0809024328857278,0.153232886604263,-0.102065137762676,0.119730725285354,0.145814252854991,-0.0305816501244217,-0.0922358719847672,-0.102065137762676,-0.102065137762676,-0.0455816617827125,-0.0366216405409936,-0.0173743814078036,-0.0761498022653318,-0.0464092295111421,-0.0856669924875692,-0.0515373750998876,0.971705333721381,0.0731334134310594,-0.0824941442828976,-0.0124565154763236,0.530178263545641,0.598101024812551,0.636585431315993,0.678150028645762,0.462823310436821,0.394216684367341,0.355597068968431,0.134020758051131,0.356956982132297,0.705353919549696,0.915773024170496,0.997218899796683,1.04162736220551,0.890980472910436,0.815955806091386,0.898540913408724,-0.102065137762676,-0.102065137762676,-0.102065137762676,0.194533215599586,0.326355824887245,0.276249477655244,0.393362044807376,0.251766965320905,0.278429287367218,0.130008616943478,0.222848016605371,0.0746868537198965,0.120527766883725,0.0341001461063192,0.0076131323544942,-0.00122535918580119,-0.0408742387217475,-0.0172069589432577,-0.0185537083305578,0.0371073504088755,-0.102065137762676,-0.0816847666841472,0.65159396797346,0.85494977203428,0.674318210132594,0.572800592878949,0.541517915992955,0.478239458007192,0.0486939036785193,0.399418766120642,0.220632069891568,0.27910848011047,0.224845284568274,-0.102065137762676,-0.00453696175966506,-0.0420458092189814,0.512815736953786,0.456142776479678,0.231229392602697,0.345183874898051,0.334884266275265,0.305423242148823,0.0530321523116612,-0.0343387366606587,-0.0054623261053498,-0.0270783368148592,-0.0616271488062152,0.0967850548804662,0.270924076613928,0.0513610454003384,0.0920737150862031,0.0340208791642889,0.0967720816791476,0.0289710237410536,-0.0646184667285475,0.00921411513773284,0.130121099503556,-0.0471056478351875,-0.0784758767012612,-0.0665487336007812,-0.0877331035600562,-0.0678695064721076,-0.0232439827850995,0.642206992873764,0.57164609786013,0.505815054357124,0.403325613951446,0.264779051203569,0.248612623197361,0.130278832259162,0.0226022053989951,0.0881577514435958,0.105541216932747,0.0102303162743494,0.00423680001852368,-0.0296500535926317,-0.102065137762676,-0.102065137762676,-0.102065137762676,-0.0808993087495544,-0.08913232242365,-0.0837723105066628,-0.0029242440987732,0.0178217551502461,-0.054427711385862,0.0700972034766704,-0.0022863566354058,-0.0248077040347433,-0.0204310324248382,-0.0146447147123279,-0.0184299857888176,-0.079795435854697,-0.0514666074805694,-0.0589565197154026,0.0455044482263157,1.20084077530284,1.05898650533119,0.0615126387074297,0.0105100277763054,0.589372957666704,0.494659462402183,0.358539350159922,0.497112451752703,0.442206938600146,0.280764372237683,0.277641348519326,0.165242196273677,0.0626062207975937,-0.102065137762676,-0.102065137762676,-0.040938173955483,0.486305695476276,0.542740660509248,0.634760035236936,0.612837528565459,0.737642453876306,0.716689565581571,0.592135812719028,-0.0503301761806402,0.03846571139258,-0.0674459823195373,-0.0640529638788734,0.29923944669935,0.218071624801048,0.0852800651621647,0.0563773030113199,0.0403406021381492,-0.0725154606864188,-0.102065137762676,0.501772780717979,0.285127998141073,-0.0465247548945279,-0.0810729561175392,-0.0566763917222208,-0.0884295667503664,-0.0501809731368298,-0.102065137762676,-0.0438504207953671,0.741319704087456,0.759958612674668,0.749450197249425,0.726935125188913,0.578782385717686,0.443842806023088,0.313916690938689,0.0110015051078487,0.0454422997691568,-0.0600903551038542,-0.0364958833917072,0.764011452157814,0.911173563259122,0.961470683428639,0.967967910968437,0.958647237546505,1.0262161754063,0.760494264587238,0.528980844356051,0.0771573039979693,0.0333417286635498,-0.0441458597019711,0.557609065317025,0.43239853740697,0.143715025784238,0.180623117289995,0.0310155677973854,-0.0263297730639986,-0.0263854654959935,-0.0701130485389796,-0.0833643148843978,-0.0694218676770275,-0.0865976798211816,-0.072060219983266,-0.0838194367914546,0.0285978967933692,-0.102065137762676,-0.0871401484249384,-0.088585150192278,-0.0523352285516796,-0.0445759029188767,-0.00387950166262622,-0.0482806116933492,-0.066755899475613,-0.102065137762676,-0.102065137762676,-0.0151933103428446,-0.0607412155104749,-0.0271094201837316,-0.0531902209221698,-0.102065137762676,-0.0139922155384822,-0.0696035022526428,-0.0658244993272812,0.0613972270154355,0.405783335505393,0.64509327910936,0.700669435119312,0.458045679497372,0.370590499647045,0.490706068689555,0.527115641693327,0.576000136208419,0.520368597474506,0.505179449405125,0.519569673198701,0.513675435876663,0.515690113509944,0.541759187179901,0.553705069404026,0.565115408742231,0.534705113780024,0.494167909174824,0.493948604992882,0.591819100839963,0.571362698355504,0.533426879894359,0.512056922363361,0.483903280985191,0.505128078683403,0.490449754982124,0.47724389042364,0.508390356654781,0.488218427669255,0.524412287917495,0.525097864085655,0.504431464642188,0.469369697173584,0.609629283554604,0.656738305474059,0.583205659815438,0.402782722252484,0.605607453179975,0.403437844614557,0.304844826661459
|coexpression_dpi_cluster_scores_median=0.706218206213242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0588161983067597,0.0852421440134277,0,0,0,0,0,0,0,0.0380188235580625,0,0,0,0,0.112145192034931,0.0578074284787346,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473020729479289,0,0,0,0,0,0,0,0,0,0.474762831188607,0.346414898835908,0.391851756712524,0.244854712220002,0.313679263065914,0,0,0,0,0.392600344203966,0,0.0152066995971033,0,0.111524892460631,0,0,0,0,0,0,0,0,0,0,0,0,0.762889434073482,0,0,0,0.389730529617859,0.31615567691858,0.499789536222348,0.532916996968362,0.241137703252629,0.306405674159287,0.161305512620779,0,0.399496498460001,0.620329244755724,0.766496556618525,0.923000147629427,0.868943271921835,0.696949444375289,0.560423206441025,0.554785308251162,0,0,0,0.192557798916774,0.323055818145874,0.252701676528431,0.418199995893421,0.367599073325196,0.219732757804328,0.0942887348921155,0.256433944073506,0.0479619276176895,0.125191740196053,0,0,0,0,0,0,0,0,0,0.357883319705812,0.521447567632625,0.334414974944823,0.344412150110516,0.276349694709285,0.289326005657568,0,0.219792932025556,0.0973736644748266,0.25426422794663,0.148911839016382,0,0,0,0.462791223855579,0.397006231109102,0.266817670107609,0.258782177730611,0.39228908734947,0.336016642444751,0,0,0,0,0,0.0670132089181356,0.143987900583469,0,0.0802151268900158,0,0.098514232005992,0,0,0,0.0121984742156629,0,0,0,0,0,0,0.366691834396838,0.362429657171615,0.300485615707015,0.257239477962456,0.246669706782798,0.237429429200081,0.143098306652819,0,0.086880916817156,0.0787188238380582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.964348266048413,0.905810081782504,0.0484183194018338,0,0.503112944474164,0.391424268083954,0.208315420740789,0.404827438906034,0.283822395835769,0.313322907550766,0.254351333793915,0,0,0,0,0,0.447252781008151,0.574166146598742,0.6345232328953,0.495278240780772,0.613783582149288,0.541156893580964,0.589978410115453,0,0,0,0,0.159497153085998,0.0938598562066058,0,0,0,0,0,0.469401449360588,0.107686195276258,0,0,0,0,0,0,0,0.507093428051258,0.476454314936822,0.468951987094879,0.39157338123778,0.272642165925968,0.304304070849569,0.19664652540205,0,0,0,0,0.450103753439059,0.599692380199934,0.631225352553604,0.626237231950594,0.592715573144853,0.746395373056255,0.489011579469477,0.444452162873441,0,0,0,0.511143917480386,0.224953628793491,0.10031596050676,0.0715236385554987,0.0787037500278776,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.493536506601392,0.55526724410964,0.489778450228879,0.220120264217601,0.239393094866555,0.368004151215568,0.455744745841848,0.358634647190438,0.303366467725811,0.329000027259646,0.249157564870574,0.334510570565896,0.348651240068894,0.340622107803992,0.482060099676277,0.378509079066757,0.328606831004004,0.334564230728938,0.274894951296473,0.485326054812979,0.461336661923834,0.467887103127322,0.37735327736438,0.311722242318998,0.350752870580521,0.293473054890413,0.319479534405166,0.342053094353359,0.513609141024204,0.28982969741047,0.464716362227009,0.503035851531996,0.411469823011351,0.371131851656515,0.476901826078693,0.380860325368858,0.272402531660609,0.387315145005212,0.220572027003917,0.229324306108569
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
}}
}}

Revision as of 13:02, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr2:160738028..160738080,-p1@Emilin3
Mm9::chr2:160738085..160738091,-p2@Emilin3
Mm9::chr5:137791599..137791707,+p4@Ephb4
Mm9::chr7:150273020..150273060,-p1@Trpm5
Mm9::chr7:150273113..150273124,-p2@Trpm5


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:1768&oldid=2151054"