Personal tools

MCL coexpression mm9:1526: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0.0783719107176729,-0.178651816394185,-0.211268732759061,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.278755382555404,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,0.283585136800854,-0.210352633294535,-0.143182398138385,-0.2619210889276,-0.268095580494032,-0.182412989170688,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,0.612358591104726,0.638323031449205,0.548953365857277,0.417550658581379,0.855709740992946,0.860440012907141,0.771267764357783,0.689806381750971,0.721474684756281,-0.286034877969406,-0.286034877969406,-0.286034877969406,0.52321179216245,0.576240833219977,0.733469272698944,-0.286034877969406,-0.286034877969406,-0.286034877969406,0.56428735799107,0.594187605668031,0.0286460660851086,0.033429086266943,0.028154194317853,0.500950746581459,0.569242108897478,-0.269666138234716,-0.265273321503372,-0.286034877969406,-0.0279164019379821,0.0700457900765474,-0.27599831999274,-0.286034877969406,-0.286034877969406,0.313205575166615,0.279716742669393,0.336441105790016,-0.275274318233562,-0.253316847224212,-0.286034877969406,0.436744364099738,0.32221080655049,0.345422359364795,0.00887708319054762,0.055333474742358,-0.2004858998919,1.34155988070568,1.31501662947427,0.4785618912476,-0.156525121370965,-0.171928967370322,-0.286034877969406,-0.286034877969406,-0.286034877969406,0.758763565238253,0.037689393522116,0.0374703949234249,-0.00599992060574681,0.391431060764588,-0.0981351344224974,-0.0986903468119008,-0.286034877969406,0.0267761152207248,0.0137732874056794,-0.055922666441972,0.288423718752964,-0.21389009538247,-0.0830114728121222,-0.0352789827329964,0.105864921112449,0.0382292015884562,0.0093949282547112,0.170462010650034,-0.0639297537627295,0.433512271307439,0.173199122181146,0.530074689224744,0.455687231681599,0.521124730154892,0.364724724267802,0.063981879048984,0.206906146457732,0.44098468851498,-0.0637338384411838,-0.286034877969406,-0.286034877969406,-0.286034877969406,0.346562265850645,0.389337819841455,-0.275753867009298,0.192877480400686,0.0663061149889708,0.400661229091418,0.311938293675522,0.0630895726313491,0.392250677796773,-0.197568426415013,0.942006076487797,0.327212488713915,0.505983828485173,0.68152595869389,0.651711506449246,1.02075201797417,1.04856770766943,1.15712547767285,1.46747335698664,-0.237942846300065,-0.0638376288897187,-0.00995194241849468,0.0935434791286356,0.027167250452689,0.325269948900633,0.175626697305835,-0.13435298275076,-0.286034877969406,-0.286034877969406,-0.286034877969406,0.569739921849098,0.556147599860102,0.532710563714397,0.641891899780442,0.660167220083005,0.623918191380654,0.732930370040725,0.643945256419188,0.77272174252745,0.537740225604083,0.768195525525992,0.833045842738604,0.947156214115617,0.868307930962502,0.986064110949632,0.171230869064107,-0.109210190102237,-0.212874588056731,-0.0720076284276512,-0.20668980371055,-0.175876647810905,-0.0458099495150478,-0.144732282875427,-0.166920678712738,-0.0940871154836673,0.0298658300619766,-0.130981014096658,-0.0563493914124077,-0.0992617501409244,-0.0448334300769807,-0.116780985021931,-0.0384398698646636,-0.0186291649848889,-0.128206374672053,-0.0299933356203194,-0.00760589113973894,0.100563034358214,0.0832348071039513,0.206706402740568,0.335290615807459,0.352156793267151,0.391085565097996,0.525714850059265,-0.230772032056216,-0.0653959987402398,-0.170451590267548,-0.202973836052756,-0.136473580198567,-0.105480553746518,-0.06710060702838,-0.114289890181444,-0.108147952024321,0.0355351076839296,0.0860685590679486,0.0590637927916554,0.0619493610363248,-0.159674608403784,0.20679785111837,-0.227367360221064,0.310529355516192,-0.00853723881613504,-0.014567853519797,-0.0503036950967908,-0.031611559532658,0.0844872275798984,0.23217559351949,0.248177568779901,0.149787042506204,0.167892461425838,0.138096990804522,0.318582329173087,0.251841495656137,0.250316083843053,-0.286034877969406,-0.286034877969406,0.0117756567927417,0.0215911814732723,0.51088821065329,0.45567123848077,0.0971114580013496,1.02723643483899,0.22688241513335,0.201540341073629,0.262476707928439,0.34468846817123,0.500516386006505,0.467808594602312,0.418971659630947,0.415570361805594,0.242203116944599,0.222527819511936,0.108250953058158,0.109223412023482,0.11970316928041,0.144606203434486,0.000204288120929608,-0.0912340000543707,-0.114469874950619,-0.169829302400304,-0.0224094251413367,-0.136218663201626,-0.0845019073832313,-0.122251741988438,0.180874423581166,-0.0573863900373736,-0.12500031890426,0.0558239672541802,-0.025610583504027,0.0662011328695515,-0.139585160248316,-0.192690015680758,-0.104688123493798,-0.0724899478597289,-0.0271791053085555,-0.0098091961092754,0.850111254860757,0.868177913932138,0.114836909415198,0.458732377941307,0.351535329460038,0.193936396212889,0.239906344948728,0.118179315516818,-0.00629512068778439,0.564501946556988,-0.191290926741162,-0.0114266556119956,-0.0805825604379935,-0.232135938452849,-0.154359455008938,-0.240646131928952,-0.286034877969406,-0.286034877969406,-0.286034877969406,0.333541405432883,-0.235423521513274,-0.0836359203187245,-0.0848940543964338,0.000928290267057302,0.0300648284224646,0.0993971723901746,0.141343889226373,0.244036778895369,0.00623570935456374,-0.0314477305136976,-0.247204582972418,-0.206615007963628,-0.191031408010343,-0.10106722018405,-0.0997776283470983,-0.200098590007091,-0.149824824357071,-0.137064399834096,-0.191027884138149,-0.17091762079779,0.288198570682097,-0.0754423237509411,-0.138597069495138,-0.0811131937797836,-0.0631077410878015,-0.0803409367320714,-0.00455273523084632,-0.126324086750058,-0.0426931987855644,-0.0803545905092885,-0.178354795133151,-0.206017370735681,-0.100335736141379,-0.2075903762756,-0.188467729869315,0.886815828791507,-0.0092631300390964,-0.05455945516401,0.213342373183976,0.265007551960773,0.704120235041198,0.118851313771407,0.0617684585924286,-0.031092745531873,-0.076458984776244,0.0437726635900644,0.0480329172894722,-0.0351209108890703,0.0520332736166545,0.116677072214575,0.180767353672849,0.0833602154133958,0.15183820106735,0.0564434954144106,-0.0984825769246187,-0.051014480979983,0.007966592509234,0.283583975476126,0.198117981092437,0.31062373120834,0.352522036193889,0.308811888452398,0.280474828122403,0.350012169016722,0.309215171858764,0.355081940470248,0.332391676161891,0.360326810241378,0.323585315566989,0.335762777426673,0.265377414724698,0.322384839797615,0.330395335668376,0.320187304499586,0.299863981783652,0.335043549467867,0.320798590072442,0.337979591801964,0.325328814068547,0.316358855978316,0.337919585572118,0.319730223368212,0.354099950939359,0.311326769944013,0.303414886078433,0.357930866356917,0.23560113392031,0.334431615687542,0.369974207515069,0.437946795270612,0.360055868893749,0.527217331529684,0.712974651674482,0.757174825880724,0.640239182320452
|coexpression_dpi_cluster_scores_mean=0.0783719107176729,-0.178651816394185,-0.211268732759061,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.278755382555404,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,0.283585136800854,-0.210352633294535,-0.143182398138385,-0.2619210889276,-0.268095580494032,-0.182412989170688,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,-0.286034877969406,0.612358591104726,0.638323031449205,0.548953365857277,0.417550658581379,0.855709740992946,0.860440012907141,0.771267764357783,0.689806381750971,0.721474684756281,-0.286034877969406,-0.286034877969406,-0.286034877969406,0.52321179216245,0.576240833219977,0.733469272698944,-0.286034877969406,-0.286034877969406,-0.286034877969406,0.56428735799107,0.594187605668031,0.0286460660851086,0.033429086266943,0.028154194317853,0.500950746581459,0.569242108897478,-0.269666138234716,-0.265273321503372,-0.286034877969406,-0.0279164019379821,0.0700457900765474,-0.27599831999274,-0.286034877969406,-0.286034877969406,0.313205575166615,0.279716742669393,0.336441105790016,-0.275274318233562,-0.253316847224212,-0.286034877969406,0.436744364099738,0.32221080655049,0.345422359364795,0.00887708319054762,0.055333474742358,-0.2004858998919,1.34155988070568,1.31501662947427,0.4785618912476,-0.156525121370965,-0.171928967370322,-0.286034877969406,-0.286034877969406,-0.286034877969406,0.758763565238253,0.037689393522116,0.0374703949234249,-0.00599992060574681,0.391431060764588,-0.0981351344224974,-0.0986903468119008,-0.286034877969406,0.0267761152207248,0.0137732874056794,-0.055922666441972,0.288423718752964,-0.21389009538247,-0.0830114728121222,-0.0352789827329964,0.105864921112449,0.0382292015884562,0.0093949282547112,0.170462010650034,-0.0639297537627295,0.433512271307439,0.173199122181146,0.530074689224744,0.455687231681599,0.521124730154892,0.364724724267802,0.063981879048984,0.206906146457732,0.44098468851498,-0.0637338384411838,-0.286034877969406,-0.286034877969406,-0.286034877969406,0.346562265850645,0.389337819841455,-0.275753867009298,0.192877480400686,0.0663061149889708,0.400661229091418,0.311938293675522,0.0630895726313491,0.392250677796773,-0.197568426415013,0.942006076487797,0.327212488713915,0.505983828485173,0.68152595869389,0.651711506449246,1.02075201797417,1.04856770766943,1.15712547767285,1.46747335698664,-0.237942846300065,-0.0638376288897187,-0.00995194241849468,0.0935434791286356,0.027167250452689,0.325269948900633,0.175626697305835,-0.13435298275076,-0.286034877969406,-0.286034877969406,-0.286034877969406,0.569739921849098,0.556147599860102,0.532710563714397,0.641891899780442,0.660167220083005,0.623918191380654,0.732930370040725,0.643945256419188,0.77272174252745,0.537740225604083,0.768195525525992,0.833045842738604,0.947156214115617,0.868307930962502,0.986064110949632,0.171230869064107,-0.109210190102237,-0.212874588056731,-0.0720076284276512,-0.20668980371055,-0.175876647810905,-0.0458099495150478,-0.144732282875427,-0.166920678712738,-0.0940871154836673,0.0298658300619766,-0.130981014096658,-0.0563493914124077,-0.0992617501409244,-0.0448334300769807,-0.116780985021931,-0.0384398698646636,-0.0186291649848889,-0.128206374672053,-0.0299933356203194,-0.00760589113973894,0.100563034358214,0.0832348071039513,0.206706402740568,0.335290615807459,0.352156793267151,0.391085565097996,0.525714850059265,-0.230772032056216,-0.0653959987402398,-0.170451590267548,-0.202973836052756,-0.136473580198567,-0.105480553746518,-0.06710060702838,-0.114289890181444,-0.108147952024321,0.0355351076839296,0.0860685590679486,0.0590637927916554,0.0619493610363248,-0.159674608403784,0.20679785111837,-0.227367360221064,0.310529355516192,-0.00853723881613504,-0.014567853519797,-0.0503036950967908,-0.031611559532658,0.0844872275798984,0.23217559351949,0.248177568779901,0.149787042506204,0.167892461425838,0.138096990804522,0.318582329173087,0.251841495656137,0.250316083843053,-0.286034877969406,-0.286034877969406,0.0117756567927417,0.0215911814732723,0.51088821065329,0.45567123848077,0.0971114580013496,1.02723643483899,0.22688241513335,0.201540341073629,0.262476707928439,0.34468846817123,0.500516386006505,0.467808594602312,0.418971659630947,0.415570361805594,0.242203116944599,0.222527819511936,0.108250953058158,0.109223412023482,0.11970316928041,0.144606203434486,0.000204288120929608,-0.0912340000543707,-0.114469874950619,-0.169829302400304,-0.0224094251413367,-0.136218663201626,-0.0845019073832313,-0.122251741988438,0.180874423581166,-0.0573863900373736,-0.12500031890426,0.0558239672541802,-0.025610583504027,0.0662011328695515,-0.139585160248316,-0.192690015680758,-0.104688123493798,-0.0724899478597289,-0.0271791053085555,-0.0098091961092754,0.850111254860757,0.868177913932138,0.114836909415198,0.458732377941307,0.351535329460038,0.193936396212889,0.239906344948728,0.118179315516818,-0.00629512068778439,0.564501946556988,-0.191290926741162,-0.0114266556119956,-0.0805825604379935,-0.232135938452849,-0.154359455008938,-0.240646131928952,-0.286034877969406,-0.286034877969406,-0.286034877969406,0.333541405432883,-0.235423521513274,-0.0836359203187245,-0.0848940543964338,0.000928290267057302,0.0300648284224646,0.0993971723901746,0.141343889226373,0.244036778895369,0.00623570935456374,-0.0314477305136976,-0.247204582972418,-0.206615007963628,-0.191031408010343,-0.10106722018405,-0.0997776283470983,-0.200098590007091,-0.149824824357071,-0.137064399834096,-0.191027884138149,-0.17091762079779,0.288198570682097,-0.0754423237509411,-0.138597069495138,-0.0811131937797836,-0.0631077410878015,-0.0803409367320714,-0.00455273523084632,-0.126324086750058,-0.0426931987855644,-0.0803545905092885,-0.178354795133151,-0.206017370735681,-0.100335736141379,-0.2075903762756,-0.188467729869315,0.886815828791507,-0.0092631300390964,-0.05455945516401,0.213342373183976,0.265007551960773,0.704120235041198,0.118851313771407,0.0617684585924286,-0.031092745531873,-0.076458984776244,0.0437726635900644,0.0480329172894722,-0.0351209108890703,0.0520332736166545,0.116677072214575,0.180767353672849,0.0833602154133958,0.15183820106735,0.0564434954144106,-0.0984825769246187,-0.051014480979983,0.007966592509234,0.283583975476126,0.198117981092437,0.31062373120834,0.352522036193889,0.308811888452398,0.280474828122403,0.350012169016722,0.309215171858764,0.355081940470248,0.332391676161891,0.360326810241378,0.323585315566989,0.335762777426673,0.265377414724698,0.322384839797615,0.330395335668376,0.320187304499586,0.299863981783652,0.335043549467867,0.320798590072442,0.337979591801964,0.325328814068547,0.316358855978316,0.337919585572118,0.319730223368212,0.354099950939359,0.311326769944013,0.303414886078433,0.357930866356917,0.23560113392031,0.334431615687542,0.369974207515069,0.437946795270612,0.360055868893749,0.527217331529684,0.712974651674482,0.757174825880724,0.640239182320452
|coexpression_dpi_cluster_scores_median=0.064513712786576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188702307856018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576310245250905,0.64804912655518,0.392410966276837,0.390012408190697,0.746519639359509,0.694986797074431,0.634004254828137,0.45022192265598,0.694644486951226,0,0,0,0.447284586825931,0.553737545102264,0.751359859116211,0,0,0,0.481882031468506,0.658696105011154,0,0,0,0.27847929887979,0.583536872599671,0,0,0,0,0.0866689030825281,0,0,0,0.322458878535173,0.179192416738202,0.208018178957679,0,0,0,0.292673810223179,0.193893011938994,0.163875090269313,0,0.0578074284787346,0,1.23374922918418,1.1219730229636,0.437621671121112,0,0,0,0,0,0.626363124942102,0,0,0,0.317268531338488,0,0,0,0,0,0,0.16338070954688,0,0,0,0.115432590314795,0,0.06097065795378,0.131222718281153,0.0514097768499148,0.174463933976285,0.0586534975690397,0.275221618407307,0.194196260805656,0.274934742957371,0.171689969376673,0,0,0.311167386762041,0,0,0,0,0.207426036152262,0.375206552143423,0,0.129576677486723,0,0.309404493414426,0.172230290669061,0.0440799957494139,0.210060181764701,0,0.741765442260801,0.217642423519386,0.283212645702645,0.433645213868639,0.448467904704167,0.827050280941452,0.768513889382883,0.946566297360366,1.01339854988223,0,0,0,0,0,0.229554973214759,0.0812688455295622,0,0,0,0,0.487316261901596,0.389764070010982,0.433645093568245,0.461492206609059,0.551198011236247,0.477912753847809,0.539326083229387,0.497784561380323,0.523135795067498,0.362163897811994,0.587009069080865,0.643935067665807,0.806817344500826,0.675077037008078,0.74531048373838,0.0177997791317449,0,0,0,0,0,0,0,0,0,0,0,0.0973736644748266,0,0.0773548534010084,0,0,0.0788703512227347,0,0,0,0,0,0.130552179598174,0.177793911775826,0.112343641145276,0.118594524292246,0.324400681597989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0523447307478577,0,0.284152233790825,0,0,0,0,0.125485336951101,0.169112038294096,0.143098306652819,0.119015009568782,0.159245076116426,0.120215008744062,0.312879187502961,0.135646011151032,0.303745256767005,0,0,0,0,0.327124685314961,0.336883187795113,0,0.832944988855649,0.21245833826791,0.202057193716509,0.269908203649581,0.34140365587969,0.508931742159443,0.431115853574368,0.58361528276474,0.439890624399625,0.144663790035931,0.215543090236368,0.108524491213051,0.0711694759496908,0.122469471105573,0.0663147875126409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0395821034283191,0,0.698049979756107,0.79905104545369,0.0865478886078475,0.288393534409083,0.0650059127791652,0.0938598562066058,0.169524366740626,0.0392259604170287,0,0.361345699164688,0,0,0,0,0.055643654597214,0,0,0,0,0,0,0,0,0,0,0.103710933695783,0.164588884355745,0.182845846232878,0,0,0,0,0,0,0,0,0,0,0,0,0.109925980570702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642620869917376,0,0,0.0673999378519914,0.198538541943989,0.602376868023714,0.0730404042754446,0,0,0,0,0,0.0459071191971665,0,0.109708698731061,0.2193851848801,0.161464196262218,0.0276422920786958,0,0,0,0,0.0945084131504676,0.077212403894809,0.135986724295729,0.159715578577694,0.081359932135904,0.120876255993453,0.17765030293269,0.110954824249407,0.139013627015232,0.107523539997041,0.160821365870842,0.128597245627104,0.169172763866184,0.0905291472420136,0.141706336142815,0.14986111676545,0.112067779638927,0.128033729919821,0.185379913858661,0.0996763719249625,0.157166310227119,0.138756502969784,0.0982434449953899,0.147421211565212,0.117995221205447,0.148421355017489,0.193442483447008,0.132229279644795,0.201677520895557,0,0.150806142030667,0.236465966185043,0.263076642413381,0.166685587652774,0.26939249630118,0.608591634163232,0.534851447236649,0.489509971759237
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
}}
}}

Revision as of 12:58, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:69250179..69250206,+p@chr10:69250179..69250206
+
Mm9::chr9:50561313..50561355,+p1@Cryab
Mm9::chr9:50561384..50561387,+p9@Cryab
Mm9::chr9:50561416..50561430,+p7@Cryab
Mm9::chr9:50564557..50564607,-p@chr9:50564557..50564607
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:1526&oldid=2150812"