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MCL coexpression mm9:482: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0019961;interferon binding;0.0441693570460601;15975!GO:0006868;glutamine transport;0.0441693570460601;105727!GO:0015186;L-glutamine transmembrane transporter activity;0.0441693570460601;105727!GO:0004637;phosphoribosylamine-glycine ligase activity;0.0441693570460601;15975!GO:0004904;interferon receptor activity;0.0441693570460601;15975!GO:0043149;stress fiber formation;0.0473139401846565;20411!GO:0015802;basic amino acid transport;0.0473139401846565;105727!
|gostat_on_MCL_coexpression=GO:0019961;interferon binding;0.0441693570460601;15975!GO:0006868;glutamine transport;0.0441693570460601;105727!GO:0015186;L-glutamine transmembrane transporter activity;0.0441693570460601;105727!GO:0004637;phosphoribosylamine-glycine ligase activity;0.0441693570460601;15975!GO:0004904;interferon receptor activity;0.0441693570460601;15975!GO:0043149;stress fiber formation;0.0473139401846565;20411!GO:0015802;basic amino acid transport;0.0473139401846565;105727!
}}
}}

Revision as of 12:42, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:80164681..80164731,-p2@Mob3a
Mm9::chr12:109149819..109149825,-p@chr12:109149819..109149825
-
Mm9::chr12:109242296..109242307,-p3@Bcl11b
Mm9::chr15:96473695..96473724,-p9@Slc38a1
Mm9::chr15:98764953..98765017,-p2@Gm5620
p2@Tuba1b
Mm9::chr16:91485298..91485311,+p5@Ifnar1
Mm9::chr16:91485312..91485350,+p2@Ifnar1
Mm9::chr17:13185451..13185464,-p5@Wtap
Mm9::chr17:13185469..13185514,-p3@Wtap
Mm9::chr17:74738040..74738089,+p1@Spast
Mm9::chr19:40588323..40588370,-p4@Sorbs1
Mm9::chr1:127332321..127332330,-p6@Actr3
Mm9::chr1:157005814..157005831,+p2@Stx6
Mm9::chr9:110019834..110019857,-p3@Dhx30
Mm9::chrX:20195322..20195344,-p@chrX:20195322..20195344
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0019961interferon binding0.0441693570460601
GO:0006868glutamine transport0.0441693570460601
GO:0015186L-glutamine transmembrane transporter activity0.0441693570460601
GO:0004637phosphoribosylamine-glycine ligase activity0.0441693570460601
GO:0004904interferon receptor activity0.0441693570460601
GO:0043149stress fiber formation0.0473139401846565
GO:0015802basic amino acid transport0.0473139401846565



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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