Personal tools

MCL coexpression mm9:342: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0,0,0.00708098983876852,0,0,0,0,0.00663074609133363,0,0,0,0,0.0055601050339303,0,0,0,0,0,0.00242626835427754,0,0.0334914956566919,0,0,0.00280239792929033,0,0,0,0.00368455150361753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.029023785239076,0.029425223295284,0.0298322989911153,0.0396111609848822,0,0.00374991756182482,0.00335481157176973,0.0518213438046995,0,0,0,0,0.575369407517673,0.100095449224719,1.17785479291616,0.00347907795889093,0,0,0.0195401281418278,0,0.481334056300386,0.452353811663748,0.491641366140717,0.28004237528209,0.327237220843226,0,0,0,0,0,0,0,0,0,0,0.00269816117112815,0,0,0.00791758599359657,0,0,0,0,0,0,0.0170014553107869,0.0116799113068954,0.0134402900412594,0,0,0,0,0,0.133165909143559,0,0.00436072953536948,0,0,0,0,0,0,0,0,0.00204160307354915,0.0165758622786897,0.0069550408974277,0.00562426668897152,0,0,0.00265089817190348,0,0.00223520768912673,0.020602629736682,0.0294595187047389,0,0,0,0,0,0,0,0.00429573311343226,0,0,0,0,0,0,0,0,0,0,0.00960278978076483,0.00221406649104769,0.0042545637999519,0.0455249146571706,0,0,0,0,0.00248574735261276,0,0.00169125638760521,0.0078740003999847,0,0,0,0,0,0,0.0035334280665027,0.00632732439763483,0,0,0.00472262267498909,0.0516709537574146,0.0508012183831397,0.0338746373151083,0.0453168346668179,0.02600945652256,0.0347524024150467,0.029899727570309,0.0552105732008493,0.0434818211208573,0.0317101544135303,0.0259041027405528,0.069152936954143,0.0641486474278395,0.0564837742436015,0.0835209856096708,0,0,0,0.00801649576468578,0.0261104853506456,0.0145518093432925,0.0185812502336856,0.00986788617832537,0.00379154524239104,0.0065764605732245,0,0,0.00423363758586203,0.00342623549479763,0,0,0,0,0.00327938016604067,0.00710685992844291,0.0142514471497624,0.0215266771053098,0.0128006022183268,0.00663206559958935,0,0,0,0,0.00879086716444809,0.0143680844582685,0.0109538623124139,0,0,0,0,0,0,0.00458090288085565,0,0,0.00512810023074243,0,0.00311565960926527,0,0.00913878029135912,0.0307237421023637,0.0156935333981263,0.015544081932529,0.00398078339372635,0.0198686650572367,0,0.0062216655066443,0,0.0037774311659633,0.00558728792153614,0,0.00601577072538737,0.00255097197495971,0,0.0082009028715747,0.0205359088298405,0.00829810065447804,0,0,0.00535458797624435,0,0,0,0,0,0,0,0,0.00484123954521287,0,0,0.00471845613969787,0.00884657330564903,0.00569891307444796,0,0,0.0103317243805903,0.00498777810116643,0.00326250356416236,0.00488569565998422,0,0.00434036843225727,0.00585503849875965,0,0.00518556607094996,0,0,0,0,0,0,0,0,0,0,0.0205744971562608,0.0430299941098358,0,0,0.00282634403387675,0.00110582849443196,0.00425865849736671,0.00756051503863048,0,0,0.0170589515415057,0.0126424578024095,0,0.0032587441633989,0.00456351774894287,0,0,0,0,0.0201649853280123,0.0283151537465354,0.0069896471922551,0.00529970611793909,0,0.0074588300955908,0,0.00299908403987252,0,0.00230132349624159,0.00912495275191787,0,0.0135233185790383,0.00761046002683404,0.00335514812417902,0.00229371378962794,0.00844460180706671,0.00209530638505692,0.00622636231678361,0.00188291274386927,0.00744306163334961,0,0,0.00348549635242531,0,0.00666799881340218,0,0.0182418156593757,0.00214320887550879,0,0,0.00406539627788663,0,0.00351198795443951,0.0033230692682909,0,0.0141220272610597,0,0.00324456289950824,0.00293043208052137,0.0108108498284776,0.0124976597486521,0.00317566975110629,0.00366741087438276,0.00767592136675291,0,0,0,0,0,0,0,0,0,0,0.0134424876844049,0.0063402363445583,0.00554695921733039,0,0.00661094166517083,0.012285883409277,0.0283248238238565,0.0233418221889185,0.0202696681497895,0.0231490489948444,0.0154577161656583,0.024472821741,0.0235853051697138,0.0238817647679761,0.0305555933516718,0.0201379244846166,0.0202745606386926,0.0189116765681957,0.00651570072893261,0.0222749577515313,0.0322345006370705,0.0254403959367612,0.0185372717997629,0.0218458226550322,0.0266427754615873,0.0220762796901278,0.0280993397699619,0.0241292671339949,0.0237082980966447,0.0405628976730603,0.0175525921780479,0.0205238061244767,0.0264156354862171,0.0165900954385777,0.0297843617366156,0.0222458908939273,0.0389626449152969,0.0576114869874056,0,0.00376392663032184,0.00719402855296391
|coexpression_dpi_cluster_scores_mean=0,0,0.00708098983876852,0,0,0,0,0.00663074609133363,0,0,0,0,0.0055601050339303,0,0,0,0,0,0.00242626835427754,0,0.0334914956566919,0,0,0.00280239792929033,0,0,0,0.00368455150361753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.029023785239076,0.029425223295284,0.0298322989911153,0.0396111609848822,0,0.00374991756182482,0.00335481157176973,0.0518213438046995,0,0,0,0,0.575369407517673,0.100095449224719,1.17785479291616,0.00347907795889093,0,0,0.0195401281418278,0,0.481334056300386,0.452353811663748,0.491641366140717,0.28004237528209,0.327237220843226,0,0,0,0,0,0,0,0,0,0,0.00269816117112815,0,0,0.00791758599359657,0,0,0,0,0,0,0.0170014553107869,0.0116799113068954,0.0134402900412594,0,0,0,0,0,0.133165909143559,0,0.00436072953536948,0,0,0,0,0,0,0,0,0.00204160307354915,0.0165758622786897,0.0069550408974277,0.00562426668897152,0,0,0.00265089817190348,0,0.00223520768912673,0.020602629736682,0.0294595187047389,0,0,0,0,0,0,0,0.00429573311343226,0,0,0,0,0,0,0,0,0,0,0.00960278978076483,0.00221406649104769,0.0042545637999519,0.0455249146571706,0,0,0,0,0.00248574735261276,0,0.00169125638760521,0.0078740003999847,0,0,0,0,0,0,0.0035334280665027,0.00632732439763483,0,0,0.00472262267498909,0.0516709537574146,0.0508012183831397,0.0338746373151083,0.0453168346668179,0.02600945652256,0.0347524024150467,0.029899727570309,0.0552105732008493,0.0434818211208573,0.0317101544135303,0.0259041027405528,0.069152936954143,0.0641486474278395,0.0564837742436015,0.0835209856096708,0,0,0,0.00801649576468578,0.0261104853506456,0.0145518093432925,0.0185812502336856,0.00986788617832537,0.00379154524239104,0.0065764605732245,0,0,0.00423363758586203,0.00342623549479763,0,0,0,0,0.00327938016604067,0.00710685992844291,0.0142514471497624,0.0215266771053098,0.0128006022183268,0.00663206559958935,0,0,0,0,0.00879086716444809,0.0143680844582685,0.0109538623124139,0,0,0,0,0,0,0.00458090288085565,0,0,0.00512810023074243,0,0.00311565960926527,0,0.00913878029135912,0.0307237421023637,0.0156935333981263,0.015544081932529,0.00398078339372635,0.0198686650572367,0,0.0062216655066443,0,0.0037774311659633,0.00558728792153614,0,0.00601577072538737,0.00255097197495971,0,0.0082009028715747,0.0205359088298405,0.00829810065447804,0,0,0.00535458797624435,0,0,0,0,0,0,0,0,0.00484123954521287,0,0,0.00471845613969787,0.00884657330564903,0.00569891307444796,0,0,0.0103317243805903,0.00498777810116643,0.00326250356416236,0.00488569565998422,0,0.00434036843225727,0.00585503849875965,0,0.00518556607094996,0,0,0,0,0,0,0,0,0,0,0.0205744971562608,0.0430299941098358,0,0,0.00282634403387675,0.00110582849443196,0.00425865849736671,0.00756051503863048,0,0,0.0170589515415057,0.0126424578024095,0,0.0032587441633989,0.00456351774894287,0,0,0,0,0.0201649853280123,0.0283151537465354,0.0069896471922551,0.00529970611793909,0,0.0074588300955908,0,0.00299908403987252,0,0.00230132349624159,0.00912495275191787,0,0.0135233185790383,0.00761046002683404,0.00335514812417902,0.00229371378962794,0.00844460180706671,0.00209530638505692,0.00622636231678361,0.00188291274386927,0.00744306163334961,0,0,0.00348549635242531,0,0.00666799881340218,0,0.0182418156593757,0.00214320887550879,0,0,0.00406539627788663,0,0.00351198795443951,0.0033230692682909,0,0.0141220272610597,0,0.00324456289950824,0.00293043208052137,0.0108108498284776,0.0124976597486521,0.00317566975110629,0.00366741087438276,0.00767592136675291,0,0,0,0,0,0,0,0,0,0,0.0134424876844049,0.0063402363445583,0.00554695921733039,0,0.00661094166517083,0.012285883409277,0.0283248238238565,0.0233418221889185,0.0202696681497895,0.0231490489948444,0.0154577161656583,0.024472821741,0.0235853051697138,0.0238817647679761,0.0305555933516718,0.0201379244846166,0.0202745606386926,0.0189116765681957,0.00651570072893261,0.0222749577515313,0.0322345006370705,0.0254403959367612,0.0185372717997629,0.0218458226550322,0.0266427754615873,0.0220762796901278,0.0280993397699619,0.0241292671339949,0.0237082980966447,0.0405628976730603,0.0175525921780479,0.0205238061244767,0.0264156354862171,0.0165900954385777,0.0297843617366156,0.0222458908939273,0.0389626449152969,0.0576114869874056,0,0.00376392663032184,0.00719402855296391
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66291189434764,0,1.18861406399318,0,0,0,0,0,0.568166410011289,0.473885713829627,0.495744142636618,0.203902841136986,0.247589497206297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=GO:0045794;negative regulation of cell volume;0.00890264614036049;16531!GO:0032344;regulation of aldosterone metabolic process;0.00890264614036049;16531!GO:0060082;eye blink reflex;0.00890264614036049;16531!GO:0004058;aromatic-L-amino-acid decarboxylase activity;0.00890264614036049;13195!GO:0032196;transposition;0.00890264614036049;17276!GO:0006313;transposition, DNA-mediated;0.00890264614036049;17276!GO:0019228;generation of action potential;0.00890264614036049;16531!GO:0060072;large conductance calcium-activated potassium channel activity;0.00890264614036049;16531!GO:0032341;aldosterone metabolic process;0.0129482392672005;16531!GO:0060083;smooth muscle contraction involved in micturition;0.0129482392672005;16531!GO:0008212;mineralocorticoid metabolic process;0.0129482392672005;16531!GO:0007423;sensory organ development;0.0133517743582362;16531,14173!GO:0046541;saliva secretion;0.0133517743582362;16531!GO:0060087;relaxation of vascular smooth muscle;0.0133517743582362;16531!GO:0045475;locomotor rhythm;0.0133517743582362;16531!GO:0032350;regulation of hormone metabolic process;0.0133517743582362;16531!GO:0035295;tube development;0.0136405841796192;16531,14173!GO:0046668;regulation of retinal cell programmed cell death;0.0149902338833339;14173!GO:0006884;regulation of cell volume;0.0149902338833339;16531!GO:0060073;micturition;0.0161813088807534;16531!GO:0048512;circadian behavior;0.0161813088807534;16531!GO:0045986;negative regulation of smooth muscle contraction;0.0161813088807534;16531!GO:0043195;terminal button;0.0166100798772788;16531!GO:0046666;retinal cell programmed cell death;0.0166100798772788;14173!GO:0045932;negative regulation of muscle contraction;0.0166100798772788;16531!GO:0006519;amino acid and derivative metabolic process;0.0166100798772788;14173,13195!GO:0019218;regulation of steroid metabolic process;0.0166100798772788;16531!GO:0045766;positive regulation of angiogenesis;0.0166100798772788;14173!GO:0003964;RNA-directed DNA polymerase activity;0.0166100798772788;17276!GO:0007622;rhythmic behavior;0.0166100798772788;16531!GO:0060004;reflex;0.0169448824132453;16531!GO:0007267;cell-cell signaling;0.0169448824132453;16531,14173!GO:0009308;amine metabolic process;0.0169448824132453;14173,13195!GO:0021940;positive regulation of granule cell precursor proliferation;0.0169448824132453;14173!GO:0019031;viral envelope;0.0169448824132453;17276!GO:0033267;axon part;0.0169448824132453;16531!GO:0021936;regulation of granule cell precursor proliferation;0.0169448824132453;14173!GO:0006807;nitrogen compound metabolic process;0.0169448824132453;14173,13195!GO:0042423;catecholamine biosynthetic process;0.0169448824132453;13195!GO:0021930;granule cell precursor proliferation;0.0169448824132453;14173!GO:0021534;cell proliferation in hindbrain;0.0169448824132453;14173!GO:0021924;cell proliferation in the external granule layer;0.0169448824132453;14173!GO:0000186;activation of MAPKK activity;0.0173953161140378;14173!GO:0015269;calcium-activated potassium channel activity;0.0173953161140378;16531!GO:0007589;fluid secretion;0.0173953161140378;16531!GO:0010092;specification of organ identity;0.0181096647399395;14173!GO:0022600;digestive system process;0.0181096647399395;16531!GO:0022839;ion gated channel activity;0.0181096647399395;16531!GO:0001759;induction of an organ;0.0181096647399395;14173!GO:0031128;induction;0.0181096647399395;14173!GO:0042311;vasodilation;0.0181096647399395;16531!GO:0044423;virion part;0.0181096647399395;17276!GO:0045168;cell-cell signaling during cell fate commitment;0.0181096647399395;14173!GO:0005227;calcium activated cation channel activity;0.0181096647399395;16531!GO:0003014;renal system process;0.0181096647399395;16531!GO:0050679;positive regulation of epithelial cell proliferation;0.0190551599685365;14173!GO:0019752;carboxylic acid metabolic process;0.0195566751615055;14173,13195!GO:0006082;organic acid metabolic process;0.0195566751615055;14173,13195!GO:0006940;regulation of smooth muscle contraction;0.0204943845685066;16531!GO:0004190;aspartic-type endopeptidase activity;0.021336517097799;17276!GO:0019216;regulation of lipid metabolic process;0.0217935754465432;16531!GO:0005104;fibroblast growth factor receptor binding;0.0217935754465432;14173!GO:0051260;protein homooligomerization;0.0233310614519163;16531!GO:0001666;response to hypoxia;0.0233310614519163;16531!GO:0007628;adult walking behavior;0.0240640544446906;16531!GO:0042491;auditory receptor cell differentiation;0.0247746585682556;16531!GO:0042401;biogenic amine biosynthetic process;0.0250894075588815;13195!GO:0050678;regulation of epithelial cell proliferation;0.0250894075588815;14173!GO:0016831;carboxy-lyase activity;0.025930627077134;13195!GO:0006939;smooth muscle contraction;0.025930627077134;16531!GO:0001934;positive regulation of protein amino acid phosphorylation;0.025930627077134;14173!GO:0033240;positive regulation of amine metabolic process;0.025930627077134;14173!GO:0045764;positive regulation of amino acid metabolic process;0.025930627077134;14173!GO:0060113;inner ear receptor cell differentiation;0.025930627077134;16531!GO:0042398;amino acid derivative biosynthetic process;0.0259944882515241;13195!GO:0051241;negative regulation of multicellular organismal process;0.0259944882515241;16531!GO:0018958;phenol metabolic process;0.0259944882515241;13195!GO:0007623;circadian rhythm;0.0259944882515241;16531!GO:0006584;catecholamine metabolic process;0.0259944882515241;13195!GO:0051259;protein oligomerization;0.0259944882515241;16531!GO:0045765;regulation of angiogenesis;0.0259944882515241;14173!GO:0032147;activation of protein kinase activity;0.0259944882515241;14173!GO:0050673;epithelial cell proliferation;0.0265351635456519;14173!GO:0050885;neuromuscular process controlling balance;0.027062826715482;16531!GO:0006937;regulation of muscle contraction;0.0271343841043562;16531!GO:0042490;mechanoreceptor differentiation;0.0271343841043562;16531!GO:0035150;regulation of tube size;0.0271343841043562;16531!GO:0050880;regulation of blood vessel size;0.0271343841043562;16531!GO:0003018;vascular process in circulatory system;0.0271343841043562;16531!GO:0010001;glial cell differentiation;0.0296503924151127;14173!GO:0016830;carbon-carbon lyase activity;0.0296503924151127;13195!GO:0007586;digestion;0.0308666142778457;16531!GO:0042063;gliogenesis;0.0310544238753382;14173!GO:0008344;adult locomotory behavior;0.0310544238753382;16531!GO:0030902;hindbrain development;0.0310544238753382;14173!GO:0042391;regulation of membrane potential;0.0310544238753382;16531!GO:0048592;eye morphogenesis;0.0314634567007677;14173!GO:0030170;pyridoxal phosphate binding;0.0329704769089509;13195!GO:0045597;positive regulation of cell differentiation;0.0329704769089509;14173!GO:0050905;neuromuscular process;0.0333476121965123;16531!GO:0016324;apical plasma membrane;0.0344167751500116;16531!GO:0033238;regulation of amine metabolic process;0.0354616015674823;14173!GO:0001932;regulation of protein amino acid phosphorylation;0.0354616015674823;14173!GO:0006521;regulation of amino acid metabolic process;0.0354616015674823;14173!GO:0008076;voltage-gated potassium channel complex;0.0364687924247634;16531!GO:0042325;regulation of phosphorylation;0.0367629008567103;14173!GO:0051174;regulation of phosphorus metabolic process;0.0367629008567103;14173!GO:0019220;regulation of phosphate metabolic process;0.0367629008567103;14173!GO:0044238;primary metabolic process;0.0375257099524355;16531,14173,17276,13195!GO:0009309;amine biosynthetic process;0.0375257099524355;13195!GO:0008201;heparin binding;0.0375257099524355;14173!GO:0048519;negative regulation of biological process;0.0375257099524355;16531,14173!GO:0044237;cellular metabolic process;0.0375257099524355;16531,14173,17276,13195!GO:0030534;adult behavior;0.0379220605897542;16531!GO:0030424;axon;0.0382054290145383;16531!GO:0030324;lung development;0.0390914509679259;14173!GO:0030323;respiratory tube development;0.0393596825726832;14173!GO:0044463;cell projection part;0.040817260730519;16531!GO:0051094;positive regulation of developmental process;0.0409692666526285;14173!GO:0050878;regulation of body fluid levels;0.0409692666526285;16531!GO:0048839;inner ear development;0.0409692666526285;16531!GO:0006576;biogenic amine metabolic process;0.0417875351795504;13195!GO:0006310;DNA recombination;0.0419106468578885;17276!GO:0005539;glycosaminoglycan binding;0.0419106468578885;14173!GO:0048469;cell maturation;0.0419106468578885;16531!GO:0043583;ear development;0.0423585509541974;16531!GO:0044271;nitrogen compound biosynthetic process;0.0423585509541974;13195!GO:0045177;apical part of cell;0.0425771180631387;16531!GO:0042445;hormone metabolic process;0.0438181956187094;16531!GO:0030247;polysaccharide binding;0.0438181956187094;14173!GO:0045860;positive regulation of protein kinase activity;0.0438181956187094;14173!GO:0003012;muscle system process;0.0438181956187094;16531!GO:0006936;muscle contraction;0.0438181956187094;16531!GO:0005249;voltage-gated potassium channel activity;0.0438181956187094;16531!GO:0001871;pattern binding;0.0442068707507138;14173!GO:0004519;endonuclease activity;0.0442068707507138;17276!GO:0006575;amino acid derivative metabolic process;0.0449093739861729;13195!GO:0033674;positive regulation of kinase activity;0.0450926938268783;14173!GO:0051347;positive regulation of transferase activity;0.0452732925550205;14173!GO:0021700;developmental maturation;0.045952462281696;16531!GO:0007605;sensory perception of sound;0.046124155030082;16531!GO:0048468;cell development;0.0463028947904052;16531,14173!GO:0009653;anatomical structure morphogenesis;0.0463028947904052;16531,14173!GO:0008015;blood circulation;0.0463028947904052;16531!GO:0003013;circulatory system process;0.0463028947904052;16531!GO:0050954;sensory perception of mechanical stimulus;0.0469461488761132;16531!GO:0045165;cell fate commitment;0.0480569921767356;14173!GO:0001654;eye development;0.0496252425198387;14173!GO:0019842;vitamin binding;0.0497620568061787;13195!GO:0016779;nucleotidyltransferase activity;0.049896969746898;17276!
|gostat_on_MCL_coexpression=GO:0045794;negative regulation of cell volume;0.00890264614036049;16531!GO:0032344;regulation of aldosterone metabolic process;0.00890264614036049;16531!GO:0060082;eye blink reflex;0.00890264614036049;16531!GO:0004058;aromatic-L-amino-acid decarboxylase activity;0.00890264614036049;13195!GO:0032196;transposition;0.00890264614036049;17276!GO:0006313;transposition, DNA-mediated;0.00890264614036049;17276!GO:0019228;generation of action potential;0.00890264614036049;16531!GO:0060072;large conductance calcium-activated potassium channel activity;0.00890264614036049;16531!GO:0032341;aldosterone metabolic process;0.0129482392672005;16531!GO:0060083;smooth muscle contraction involved in micturition;0.0129482392672005;16531!GO:0008212;mineralocorticoid metabolic process;0.0129482392672005;16531!GO:0007423;sensory organ development;0.0133517743582362;16531,14173!GO:0046541;saliva secretion;0.0133517743582362;16531!GO:0060087;relaxation of vascular smooth muscle;0.0133517743582362;16531!GO:0045475;locomotor rhythm;0.0133517743582362;16531!GO:0032350;regulation of hormone metabolic process;0.0133517743582362;16531!GO:0035295;tube development;0.0136405841796192;16531,14173!GO:0046668;regulation of retinal cell programmed cell death;0.0149902338833339;14173!GO:0006884;regulation of cell volume;0.0149902338833339;16531!GO:0060073;micturition;0.0161813088807534;16531!GO:0048512;circadian behavior;0.0161813088807534;16531!GO:0045986;negative regulation of smooth muscle contraction;0.0161813088807534;16531!GO:0043195;terminal button;0.0166100798772788;16531!GO:0046666;retinal cell programmed cell death;0.0166100798772788;14173!GO:0045932;negative regulation of muscle contraction;0.0166100798772788;16531!GO:0006519;amino acid and derivative metabolic process;0.0166100798772788;14173,13195!GO:0019218;regulation of steroid metabolic process;0.0166100798772788;16531!GO:0045766;positive regulation of angiogenesis;0.0166100798772788;14173!GO:0003964;RNA-directed DNA polymerase activity;0.0166100798772788;17276!GO:0007622;rhythmic behavior;0.0166100798772788;16531!GO:0060004;reflex;0.0169448824132453;16531!GO:0007267;cell-cell signaling;0.0169448824132453;16531,14173!GO:0009308;amine metabolic process;0.0169448824132453;14173,13195!GO:0021940;positive regulation of granule cell precursor proliferation;0.0169448824132453;14173!GO:0019031;viral envelope;0.0169448824132453;17276!GO:0033267;axon part;0.0169448824132453;16531!GO:0021936;regulation of granule cell precursor proliferation;0.0169448824132453;14173!GO:0006807;nitrogen compound metabolic process;0.0169448824132453;14173,13195!GO:0042423;catecholamine biosynthetic process;0.0169448824132453;13195!GO:0021930;granule cell precursor proliferation;0.0169448824132453;14173!GO:0021534;cell proliferation in hindbrain;0.0169448824132453;14173!GO:0021924;cell proliferation in the external granule layer;0.0169448824132453;14173!GO:0000186;activation of MAPKK activity;0.0173953161140378;14173!GO:0015269;calcium-activated potassium channel activity;0.0173953161140378;16531!GO:0007589;fluid secretion;0.0173953161140378;16531!GO:0010092;specification of organ identity;0.0181096647399395;14173!GO:0022600;digestive system process;0.0181096647399395;16531!GO:0022839;ion gated channel activity;0.0181096647399395;16531!GO:0001759;induction of an organ;0.0181096647399395;14173!GO:0031128;induction;0.0181096647399395;14173!GO:0042311;vasodilation;0.0181096647399395;16531!GO:0044423;virion part;0.0181096647399395;17276!GO:0045168;cell-cell signaling during cell fate commitment;0.0181096647399395;14173!GO:0005227;calcium activated cation channel activity;0.0181096647399395;16531!GO:0003014;renal system process;0.0181096647399395;16531!GO:0050679;positive regulation of epithelial cell proliferation;0.0190551599685365;14173!GO:0019752;carboxylic acid metabolic process;0.0195566751615055;14173,13195!GO:0006082;organic acid metabolic process;0.0195566751615055;14173,13195!GO:0006940;regulation of smooth muscle contraction;0.0204943845685066;16531!GO:0004190;aspartic-type endopeptidase activity;0.021336517097799;17276!GO:0019216;regulation of lipid metabolic process;0.0217935754465432;16531!GO:0005104;fibroblast growth factor receptor binding;0.0217935754465432;14173!GO:0051260;protein homooligomerization;0.0233310614519163;16531!GO:0001666;response to hypoxia;0.0233310614519163;16531!GO:0007628;adult walking behavior;0.0240640544446906;16531!GO:0042491;auditory receptor cell differentiation;0.0247746585682556;16531!GO:0042401;biogenic amine biosynthetic process;0.0250894075588815;13195!GO:0050678;regulation of epithelial cell proliferation;0.0250894075588815;14173!GO:0016831;carboxy-lyase activity;0.025930627077134;13195!GO:0006939;smooth muscle contraction;0.025930627077134;16531!GO:0001934;positive regulation of protein amino acid phosphorylation;0.025930627077134;14173!GO:0033240;positive regulation of amine metabolic process;0.025930627077134;14173!GO:0045764;positive regulation of amino acid metabolic process;0.025930627077134;14173!GO:0060113;inner ear receptor cell differentiation;0.025930627077134;16531!GO:0042398;amino acid derivative biosynthetic process;0.0259944882515241;13195!GO:0051241;negative regulation of multicellular organismal process;0.0259944882515241;16531!GO:0018958;phenol metabolic process;0.0259944882515241;13195!GO:0007623;circadian rhythm;0.0259944882515241;16531!GO:0006584;catecholamine metabolic process;0.0259944882515241;13195!GO:0051259;protein oligomerization;0.0259944882515241;16531!GO:0045765;regulation of angiogenesis;0.0259944882515241;14173!GO:0032147;activation of protein kinase activity;0.0259944882515241;14173!GO:0050673;epithelial cell proliferation;0.0265351635456519;14173!GO:0050885;neuromuscular process controlling balance;0.027062826715482;16531!GO:0006937;regulation of muscle contraction;0.0271343841043562;16531!GO:0042490;mechanoreceptor differentiation;0.0271343841043562;16531!GO:0035150;regulation of tube size;0.0271343841043562;16531!GO:0050880;regulation of blood vessel size;0.0271343841043562;16531!GO:0003018;vascular process in circulatory system;0.0271343841043562;16531!GO:0010001;glial cell differentiation;0.0296503924151127;14173!GO:0016830;carbon-carbon lyase activity;0.0296503924151127;13195!GO:0007586;digestion;0.0308666142778457;16531!GO:0042063;gliogenesis;0.0310544238753382;14173!GO:0008344;adult locomotory behavior;0.0310544238753382;16531!GO:0030902;hindbrain development;0.0310544238753382;14173!GO:0042391;regulation of membrane potential;0.0310544238753382;16531!GO:0048592;eye morphogenesis;0.0314634567007677;14173!GO:0030170;pyridoxal phosphate binding;0.0329704769089509;13195!GO:0045597;positive regulation of cell differentiation;0.0329704769089509;14173!GO:0050905;neuromuscular process;0.0333476121965123;16531!GO:0016324;apical plasma membrane;0.0344167751500116;16531!GO:0033238;regulation of amine metabolic process;0.0354616015674823;14173!GO:0001932;regulation of protein amino acid phosphorylation;0.0354616015674823;14173!GO:0006521;regulation of amino acid metabolic process;0.0354616015674823;14173!GO:0008076;voltage-gated potassium channel complex;0.0364687924247634;16531!GO:0042325;regulation of phosphorylation;0.0367629008567103;14173!GO:0051174;regulation of phosphorus metabolic process;0.0367629008567103;14173!GO:0019220;regulation of phosphate metabolic process;0.0367629008567103;14173!GO:0044238;primary metabolic process;0.0375257099524355;16531,14173,17276,13195!GO:0009309;amine biosynthetic process;0.0375257099524355;13195!GO:0008201;heparin binding;0.0375257099524355;14173!GO:0048519;negative regulation of biological process;0.0375257099524355;16531,14173!GO:0044237;cellular metabolic process;0.0375257099524355;16531,14173,17276,13195!GO:0030534;adult behavior;0.0379220605897542;16531!GO:0030424;axon;0.0382054290145383;16531!GO:0030324;lung development;0.0390914509679259;14173!GO:0030323;respiratory tube development;0.0393596825726832;14173!GO:0044463;cell projection part;0.040817260730519;16531!GO:0051094;positive regulation of developmental process;0.0409692666526285;14173!GO:0050878;regulation of body fluid levels;0.0409692666526285;16531!GO:0048839;inner ear development;0.0409692666526285;16531!GO:0006576;biogenic amine metabolic process;0.0417875351795504;13195!GO:0006310;DNA recombination;0.0419106468578885;17276!GO:0005539;glycosaminoglycan binding;0.0419106468578885;14173!GO:0048469;cell maturation;0.0419106468578885;16531!GO:0043583;ear development;0.0423585509541974;16531!GO:0044271;nitrogen compound biosynthetic process;0.0423585509541974;13195!GO:0045177;apical part of cell;0.0425771180631387;16531!GO:0042445;hormone metabolic process;0.0438181956187094;16531!GO:0030247;polysaccharide binding;0.0438181956187094;14173!GO:0045860;positive regulation of protein kinase activity;0.0438181956187094;14173!GO:0003012;muscle system process;0.0438181956187094;16531!GO:0006936;muscle contraction;0.0438181956187094;16531!GO:0005249;voltage-gated potassium channel activity;0.0438181956187094;16531!GO:0001871;pattern binding;0.0442068707507138;14173!GO:0004519;endonuclease activity;0.0442068707507138;17276!GO:0006575;amino acid derivative metabolic process;0.0449093739861729;13195!GO:0033674;positive regulation of kinase activity;0.0450926938268783;14173!GO:0051347;positive regulation of transferase activity;0.0452732925550205;14173!GO:0021700;developmental maturation;0.045952462281696;16531!GO:0007605;sensory perception of sound;0.046124155030082;16531!GO:0048468;cell development;0.0463028947904052;16531,14173!GO:0009653;anatomical structure morphogenesis;0.0463028947904052;16531,14173!GO:0008015;blood circulation;0.0463028947904052;16531!GO:0003013;circulatory system process;0.0463028947904052;16531!GO:0050954;sensory perception of mechanical stimulus;0.0469461488761132;16531!GO:0045165;cell fate commitment;0.0480569921767356;14173!GO:0001654;eye development;0.0496252425198387;14173!GO:0019842;vitamin binding;0.0497620568061787;13195!GO:0016779;nucleotidyltransferase activity;0.049896969746898;17276!
}}
}}

Revision as of 12:40, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:11781140..11781150,-p@chr11:11781140..11781150
-
Mm9::chr12:105433069..105433075,-p@chr12:105433069..105433075
-
Mm9::chr14:58802053..58802059,-p@chr14:58802053..58802059
-
Mm9::chr3:37265803..37265817,+p7@Fgf2
Mm9::chr4:147375200..147375220,+p@chr4:147375200..147375220
+
Mm9::chr5:88385298..88385340,+p@chr5:88385298..88385340
+
Mm9::chr8:125950637..125950639,-p@chr8:125950637..125950639
-
Mm9::chr8:125951458..125951466,-p@chr8:125951458..125951466
-
Mm9::chr8:125951545..125951559,-p@chr8:125951545..125951559
-
Mm9::chr8:125951622..125951629,-p@chr8:125951622..125951629
-
Mm9::chr8:125951737..125951748,-p@chr8:125951737..125951748
-
Mm9::chr8:125952002..125952012,-p@chr8:125952002..125952012
-
Mm9::chr8:125952310..125952320,+p@chr8:125952310..125952320
+
Mm9::chr8:125952865..125952872,-p@chr8:125952865..125952872
-
Mm9::chr8:125952972..125952981,-p@chr8:125952972..125952981
-
Mm9::chr8:125953346..125953349,-p@chr8:125953346..125953349
-
Mm9::chr8:125953495..125953499,-p@chr8:125953495..125953499
-
Mm9::chr8:125956179..125956189,-p@chr8:125956179..125956189
-
Mm9::chr8:125956252..125956255,-p@chr8:125956252..125956255
-
Mm9::chr8:125956332..125956339,-p@chr8:125956332..125956339
-
Mm9::chr8:125956453..125956462,-p@chr8:125956453..125956462
-
Mm9::chr8:125956513..125956519,-p@chr8:125956513..125956519
-
Mm9::chr8:125956526..125956533,-p@chr8:125956526..125956533
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0045794negative regulation of cell volume0.00890264614036049
GO:0032344regulation of aldosterone metabolic process0.00890264614036049
GO:0060082eye blink reflex0.00890264614036049
GO:0004058aromatic-L-amino-acid decarboxylase activity0.00890264614036049
GO:0032196transposition0.00890264614036049
GO:0006313transposition, DNA-mediated0.00890264614036049
GO:0019228generation of action potential0.00890264614036049
GO:0060072large conductance calcium-activated potassium channel activity0.00890264614036049
GO:0032341aldosterone metabolic process0.0129482392672005
GO:0060083smooth muscle contraction involved in micturition0.0129482392672005
GO:0008212mineralocorticoid metabolic process0.0129482392672005
GO:0007423sensory organ development0.0133517743582362
GO:0046541saliva secretion0.0133517743582362
GO:0060087relaxation of vascular smooth muscle0.0133517743582362
GO:0045475locomotor rhythm0.0133517743582362
GO:0032350regulation of hormone metabolic process0.0133517743582362
GO:0035295tube development0.0136405841796192
GO:0046668regulation of retinal cell programmed cell death0.0149902338833339
GO:0006884regulation of cell volume0.0149902338833339
GO:0060073micturition0.0161813088807534
GO:0048512circadian behavior0.0161813088807534
GO:0045986negative regulation of smooth muscle contraction0.0161813088807534
GO:0043195terminal button0.0166100798772788
GO:0046666retinal cell programmed cell death0.0166100798772788
GO:0045932negative regulation of muscle contraction0.0166100798772788
GO:0006519amino acid and derivative metabolic process0.0166100798772788
GO:0019218regulation of steroid metabolic process0.0166100798772788
GO:0045766positive regulation of angiogenesis0.0166100798772788
GO:0003964RNA-directed DNA polymerase activity0.0166100798772788
GO:0007622rhythmic behavior0.0166100798772788
GO:0060004reflex0.0169448824132453
GO:0007267cell-cell signaling0.0169448824132453
GO:0009308amine metabolic process0.0169448824132453
GO:0021940positive regulation of granule cell precursor proliferation0.0169448824132453
GO:0019031viral envelope0.0169448824132453
GO:0033267axon part0.0169448824132453
GO:0021936regulation of granule cell precursor proliferation0.0169448824132453
GO:0006807nitrogen compound metabolic process0.0169448824132453
GO:0042423catecholamine biosynthetic process0.0169448824132453
GO:0021930granule cell precursor proliferation0.0169448824132453
GO:0021534cell proliferation in hindbrain0.0169448824132453
GO:0021924cell proliferation in the external granule layer0.0169448824132453
GO:0000186activation of MAPKK activity0.0173953161140378
GO:0015269calcium-activated potassium channel activity0.0173953161140378
GO:0007589fluid secretion0.0173953161140378
GO:0010092specification of organ identity0.0181096647399395
GO:0022600digestive system process0.0181096647399395
GO:0022839ion gated channel activity0.0181096647399395
GO:0001759induction of an organ0.0181096647399395
GO:0031128induction0.0181096647399395
GO:0042311vasodilation0.0181096647399395
GO:0044423virion part0.0181096647399395
GO:0045168cell-cell signaling during cell fate commitment0.0181096647399395
GO:0005227calcium activated cation channel activity0.0181096647399395
GO:0003014renal system process0.0181096647399395
GO:0050679positive regulation of epithelial cell proliferation0.0190551599685365
GO:0019752carboxylic acid metabolic process0.0195566751615055
GO:0006082organic acid metabolic process0.0195566751615055
GO:0006940regulation of smooth muscle contraction0.0204943845685066
GO:0004190aspartic-type endopeptidase activity0.021336517097799
GO:0019216regulation of lipid metabolic process0.0217935754465432
GO:0005104fibroblast growth factor receptor binding0.0217935754465432
GO:0051260protein homooligomerization0.0233310614519163
GO:0001666response to hypoxia0.0233310614519163
GO:0007628adult walking behavior0.0240640544446906
GO:0042491auditory receptor cell differentiation0.0247746585682556
GO:0042401biogenic amine biosynthetic process0.0250894075588815
GO:0050678regulation of epithelial cell proliferation0.0250894075588815
GO:0016831carboxy-lyase activity0.025930627077134
GO:0006939smooth muscle contraction0.025930627077134
GO:0001934positive regulation of protein amino acid phosphorylation0.025930627077134
GO:0033240positive regulation of amine metabolic process0.025930627077134
GO:0045764positive regulation of amino acid metabolic process0.025930627077134
GO:0060113inner ear receptor cell differentiation0.025930627077134
GO:0042398amino acid derivative biosynthetic process0.0259944882515241
GO:0051241negative regulation of multicellular organismal process0.0259944882515241
GO:0018958phenol metabolic process0.0259944882515241
GO:0007623circadian rhythm0.0259944882515241
GO:0006584catecholamine metabolic process0.0259944882515241
GO:0051259protein oligomerization0.0259944882515241
GO:0045765regulation of angiogenesis0.0259944882515241
GO:0032147activation of protein kinase activity0.0259944882515241
GO:0050673epithelial cell proliferation0.0265351635456519
GO:0050885neuromuscular process controlling balance0.027062826715482
GO:0006937regulation of muscle contraction0.0271343841043562
GO:0042490mechanoreceptor differentiation0.0271343841043562
GO:0035150regulation of tube size0.0271343841043562
GO:0050880regulation of blood vessel size0.0271343841043562
GO:0003018vascular process in circulatory system0.0271343841043562
GO:0010001glial cell differentiation0.0296503924151127
GO:0016830carbon-carbon lyase activity0.0296503924151127
GO:0007586digestion0.0308666142778457
GO:0042063gliogenesis0.0310544238753382
GO:0008344adult locomotory behavior0.0310544238753382
GO:0030902hindbrain development0.0310544238753382
GO:0042391regulation of membrane potential0.0310544238753382
GO:0048592eye morphogenesis0.0314634567007677
GO:0030170pyridoxal phosphate binding0.0329704769089509
GO:0045597positive regulation of cell differentiation0.0329704769089509
GO:0050905neuromuscular process0.0333476121965123
GO:0016324apical plasma membrane0.0344167751500116
GO:0033238regulation of amine metabolic process0.0354616015674823
GO:0001932regulation of protein amino acid phosphorylation0.0354616015674823
GO:0006521regulation of amino acid metabolic process0.0354616015674823
GO:0008076voltage-gated potassium channel complex0.0364687924247634
GO:0042325regulation of phosphorylation0.0367629008567103
GO:0051174regulation of phosphorus metabolic process0.0367629008567103
GO:0019220regulation of phosphate metabolic process0.0367629008567103
GO:0044238primary metabolic process0.0375257099524355
GO:0009309amine biosynthetic process0.0375257099524355
GO:0008201heparin binding0.0375257099524355
GO:0048519negative regulation of biological process0.0375257099524355
GO:0044237cellular metabolic process0.0375257099524355
GO:0030534adult behavior0.0379220605897542
GO:0030424axon0.0382054290145383
GO:0030324lung development0.0390914509679259
GO:0030323respiratory tube development0.0393596825726832
GO:0044463cell projection part0.040817260730519
GO:0051094positive regulation of developmental process0.0409692666526285
GO:0050878regulation of body fluid levels0.0409692666526285
GO:0048839inner ear development0.0409692666526285
GO:0006576biogenic amine metabolic process0.0417875351795504
GO:0006310DNA recombination0.0419106468578885
GO:0005539glycosaminoglycan binding0.0419106468578885
GO:0048469cell maturation0.0419106468578885
GO:0043583ear development0.0423585509541974
GO:0044271nitrogen compound biosynthetic process0.0423585509541974
GO:0045177apical part of cell0.0425771180631387
GO:0042445hormone metabolic process0.0438181956187094
GO:0030247polysaccharide binding0.0438181956187094
GO:0045860positive regulation of protein kinase activity0.0438181956187094
GO:0003012muscle system process0.0438181956187094
GO:0006936muscle contraction0.0438181956187094
GO:0005249voltage-gated potassium channel activity0.0438181956187094
GO:0001871pattern binding0.0442068707507138
GO:0004519endonuclease activity0.0442068707507138
GO:0006575amino acid derivative metabolic process0.0449093739861729
GO:0033674positive regulation of kinase activity0.0450926938268783
GO:0051347positive regulation of transferase activity0.0452732925550205
GO:0021700developmental maturation0.045952462281696
GO:0007605sensory perception of sound0.046124155030082
GO:0048468cell development0.0463028947904052
GO:0009653anatomical structure morphogenesis0.0463028947904052
GO:0008015blood circulation0.0463028947904052
GO:0003013circulatory system process0.0463028947904052
GO:0050954sensory perception of mechanical stimulus0.0469461488761132
GO:0045165cell fate commitment0.0480569921767356
GO:0001654eye development0.0496252425198387
GO:0019842vitamin binding0.0497620568061787
GO:0016779nucleotidyltransferase activity0.049896969746898



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:342&oldid=2149628"