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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0042249;establishment of polarity of embryonic epithelium;0.0082178272064866;14238!GO:0007164;establishment of tissue polarity;0.0082178272064866;14238!GO:0001736;establishment of planar polarity;0.0082178272064866;14238!GO:0001738;morphogenesis of a polarized epithelium;0.0106831753684326;14238!GO:0048566;embryonic gut development;0.0106831753684326;14238!GO:0048565;gut development;0.0123267408097299;14238!GO:0048568;embryonic organ development;0.0217185433314289;14238!GO:0030198;extracellular matrix organization and biogenesis;0.0292760094231085;14238!GO:0003713;transcription coactivator activity;0.0310451250022827;14238!GO:0003702;RNA polymerase II transcription factor activity;0.0312277433846491;14238!GO:0043062;extracellular structure organization and biogenesis;0.0369802224291897;14238!GO:0002009;morphogenesis of an epithelium;0.0421163644332438;14238!GO:0003712;transcription cofactor activity;0.0429855576954684;14238!GO:0016563;transcription activator activity;0.0480229277379061;14238!GO:0008134;transcription factor binding;0.0480229277379061;14238!GO:0045892;negative regulation of transcription, DNA-dependent;0.0480229277379061;14238!}}
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0042249;establishment of polarity of embryonic epithelium;0.0082178272064866;14238!GO:0007164;establishment of tissue polarity;0.0082178272064866;14238!GO:0001736;establishment of planar polarity;0.0082178272064866;14238!GO:0001738;morphogenesis of a polarized epithelium;0.0106831753684326;14238!GO:0048566;embryonic gut development;0.0106831753684326;14238!GO:0048565;gut development;0.0123267408097299;14238!GO:0048568;embryonic organ development;0.0217185433314289;14238!GO:0030198;extracellular matrix organization and biogenesis;0.0292760094231085;14238!GO:0003713;transcription coactivator activity;0.0310451250022827;14238!GO:0003702;RNA polymerase II transcription factor activity;0.0312277433846491;14238!GO:0043062;extracellular structure organization and biogenesis;0.0369802224291897;14238!GO:0002009;morphogenesis of an epithelium;0.0421163644332438;14238!GO:0003712;transcription cofactor activity;0.0429855576954684;14238!GO:0016563;transcription activator activity;0.0480229277379061;14238!GO:0008134;transcription factor binding;0.0480229277379061;14238!GO:0045892;negative regulation of transcription, DNA-dependent;0.0480229277379061;14238!
}}

Revision as of 11:31, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr13:31717418..31717433,-p1@1700018A04Rik
Mm9::chr13:31717548..31717596,+p1@Foxf2
Mm9::chr13:31717597..31717613,+p2@Foxf2
Mm9::chr13:31717614..31717628,+p3@Foxf2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0042249establishment of polarity of embryonic epithelium0.0082178272064866
GO:0007164establishment of tissue polarity0.0082178272064866
GO:0001736establishment of planar polarity0.0082178272064866
GO:0001738morphogenesis of a polarized epithelium0.0106831753684326
GO:0048566embryonic gut development0.0106831753684326
GO:0048565gut development0.0123267408097299
GO:0048568embryonic organ development0.0217185433314289
GO:0030198extracellular matrix organization and biogenesis0.0292760094231085
GO:0003713transcription coactivator activity0.0310451250022827
GO:0003702RNA polymerase II transcription factor activity0.0312277433846491
GO:0043062extracellular structure organization and biogenesis0.0369802224291897
GO:0002009morphogenesis of an epithelium0.0421163644332438
GO:0003712transcription cofactor activity0.0429855576954684
GO:0016563transcription activator activity0.0480229277379061
GO:0008134transcription factor binding0.0480229277379061
GO:0045892negative regulation of transcription, DNA-dependent0.0480229277379061



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}