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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0031234;extrinsic to internal side of plasma membrane;0.0134302590628322;13385!GO:0015696;ammonium transport;0.0134302590628322;56315!GO:0008519;ammonium transmembrane transporter activity;0.0134302590628322;56315!GO:0015695;organic cation transport;0.0134302590628322;56315!GO:0016188;synaptic vesicle maturation;0.0134302590628322;13385!GO:0015101;organic cation transmembrane transporter activity;0.0134302590628322;56315!GO:0009898;internal side of plasma membrane;0.0134302590628322;13385!GO:0005886;plasma membrane;0.0134302590628322;13385,56315,19277!GO:0042043;neurexin binding;0.0134302590628322;13385!GO:0048488;synaptic vesicle endocytosis;0.0134302590628322;13385!GO:0042220;response to cocaine;0.0134302590628322;13385!GO:0014073;response to tropane;0.0134302590628322;13385!GO:0048169;regulation of long-term neuronal synaptic plasticity;0.0143232547723708;13385!GO:0016050;vesicle organization and biogenesis;0.0143232547723708;13385!GO:0014069;postsynaptic density;0.0143232547723708;13385!GO:0048168;regulation of neuronal synaptic plasticity;0.0156643429534549;13385!GO:0014070;response to organic cyclic substance;0.0168471944875181;13385!GO:0043279;response to alkaloid;0.0169047651991126;13385!GO:0007185;transmembrane receptor protein tyrosine phosphatase signaling pathway;0.0187066087753133;19277!GO:0048167;regulation of synaptic plasticity;0.0187066087753133;13385!GO:0050803;regulation of synapse structure and activity;0.0187066087753133;13385!GO:0048489;synaptic vesicle transport;0.0187066087753133;13385!GO:0010033;response to organic substance;0.0225536707671382;13385!GO:0016324;apical plasma membrane;0.0357297021096922;56315!GO:0019897;extrinsic to plasma membrane;0.0357297021096922;13385!GO:0019717;synaptosome;0.0357297021096922;13385!GO:0019898;extrinsic to membrane;0.0456120692889139;13385!GO:0045177;apical part of cell;0.0490610155853036;56315!}}
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0031234;extrinsic to internal side of plasma membrane;0.0134302590628322;13385!GO:0015696;ammonium transport;0.0134302590628322;56315!GO:0008519;ammonium transmembrane transporter activity;0.0134302590628322;56315!GO:0015695;organic cation transport;0.0134302590628322;56315!GO:0016188;synaptic vesicle maturation;0.0134302590628322;13385!GO:0015101;organic cation transmembrane transporter activity;0.0134302590628322;56315!GO:0009898;internal side of plasma membrane;0.0134302590628322;13385!GO:0005886;plasma membrane;0.0134302590628322;13385,56315,19277!GO:0042043;neurexin binding;0.0134302590628322;13385!GO:0048488;synaptic vesicle endocytosis;0.0134302590628322;13385!GO:0042220;response to cocaine;0.0134302590628322;13385!GO:0014073;response to tropane;0.0134302590628322;13385!GO:0048169;regulation of long-term neuronal synaptic plasticity;0.0143232547723708;13385!GO:0016050;vesicle organization and biogenesis;0.0143232547723708;13385!GO:0014069;postsynaptic density;0.0143232547723708;13385!GO:0048168;regulation of neuronal synaptic plasticity;0.0156643429534549;13385!GO:0014070;response to organic cyclic substance;0.0168471944875181;13385!GO:0043279;response to alkaloid;0.0169047651991126;13385!GO:0007185;transmembrane receptor protein tyrosine phosphatase signaling pathway;0.0187066087753133;19277!GO:0048167;regulation of synaptic plasticity;0.0187066087753133;13385!GO:0050803;regulation of synapse structure and activity;0.0187066087753133;13385!GO:0048489;synaptic vesicle transport;0.0187066087753133;13385!GO:0010033;response to organic substance;0.0225536707671382;13385!GO:0016324;apical plasma membrane;0.0357297021096922;56315!GO:0019897;extrinsic to plasma membrane;0.0357297021096922;13385!GO:0019717;synaptosome;0.0357297021096922;13385!GO:0019898;extrinsic to membrane;0.0456120692889139;13385!GO:0045177;apical part of cell;0.0490610155853036;56315!
}}

Revision as of 11:16, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:69843315..69843339,+p4@Dlg4
Mm9::chr6:137200818..137200847,+p1@Ptpro
Mm9::chr6:137200913..137200944,+p5@Ptpro
Mm9::chr6:137200950..137200995,+p2@Ptpro
Mm9::chr6:137201001..137201024,+p3@Ptpro
Mm9::chr6:137201025..137201036,+p11@Ptpro
Mm9::chr6:137201056..137201065,+p12@Ptpro
Mm9::chr7:86739877..86739895,-p2@Rhcg


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0031234extrinsic to internal side of plasma membrane0.0134302590628322
GO:0015696ammonium transport0.0134302590628322
GO:0008519ammonium transmembrane transporter activity0.0134302590628322
GO:0015695organic cation transport0.0134302590628322
GO:0016188synaptic vesicle maturation0.0134302590628322
GO:0015101organic cation transmembrane transporter activity0.0134302590628322
GO:0009898internal side of plasma membrane0.0134302590628322
GO:0005886plasma membrane0.0134302590628322
GO:0042043neurexin binding0.0134302590628322
GO:0048488synaptic vesicle endocytosis0.0134302590628322
GO:0042220response to cocaine0.0134302590628322
GO:0014073response to tropane0.0134302590628322
GO:0048169regulation of long-term neuronal synaptic plasticity0.0143232547723708
GO:0016050vesicle organization and biogenesis0.0143232547723708
GO:0014069postsynaptic density0.0143232547723708
GO:0048168regulation of neuronal synaptic plasticity0.0156643429534549
GO:0014070response to organic cyclic substance0.0168471944875181
GO:0043279response to alkaloid0.0169047651991126
GO:0007185transmembrane receptor protein tyrosine phosphatase signaling pathway0.0187066087753133
GO:0048167regulation of synaptic plasticity0.0187066087753133
GO:0050803regulation of synapse structure and activity0.0187066087753133
GO:0048489synaptic vesicle transport0.0187066087753133
GO:0010033response to organic substance0.0225536707671382
GO:0016324apical plasma membrane0.0357297021096922
GO:0019897extrinsic to plasma membrane0.0357297021096922
GO:0019717synaptosome0.0357297021096922
GO:0019898extrinsic to membrane0.0456120692889139
GO:0045177apical part of cell0.0490610155853036



Relative expression of the co-expression cluster over median <br>Analyst:


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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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